DcrB/PsbP domain-containing protein similar to Chlamydomonas reinhardtii oxygen-evolving enhancer protein 2 that may be involved in the regulation of photosystem II
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II ...
102-242
4.77e-12
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.
The actual alignment was detected with superfamily member PLN00066:
Pssm-ID: 446075 Cd Length: 262 Bit Score: 64.06 E-value: 4.77e-12
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II ...
102-240
7.33e-09
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.
Pssm-ID: 426435 Cd Length: 155 Bit Score: 53.01 E-value: 7.33e-09
Photosystem II reaction center protein P, PsbP [Energy production and conversion]; Photosystem ...
82-240
1.86e-07
Photosystem II reaction center protein P, PsbP [Energy production and conversion]; Photosystem II reaction center protein P, PsbP is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444440 Cd Length: 180 Bit Score: 49.55 E-value: 1.86e-07
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II ...
102-240
7.33e-09
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.
Pssm-ID: 426435 Cd Length: 155 Bit Score: 53.01 E-value: 7.33e-09
Photosystem II reaction center protein P, PsbP [Energy production and conversion]; Photosystem ...
82-240
1.86e-07
Photosystem II reaction center protein P, PsbP [Energy production and conversion]; Photosystem II reaction center protein P, PsbP is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444440 Cd Length: 180 Bit Score: 49.55 E-value: 1.86e-07
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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of your query sequence and the protein sequences used to curate the domain model,
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
(illustrated example)
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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