zinc finger protein CONSTANS-LIKE 16 [Medicago truncatula]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
358-400 | 8.77e-22 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. : Pssm-ID: 461849 Cd Length: 44 Bit Score: 87.55 E-value: 8.77e-22
|
||||||
| Bbox1_BBX-like | cd19821 | B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ... |
21-64 | 3.02e-17 | ||
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H. : Pssm-ID: 380879 Cd Length: 44 Bit Score: 75.03 E-value: 3.02e-17
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
358-400 | 8.77e-22 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Pssm-ID: 461849 Cd Length: 44 Bit Score: 87.55 E-value: 8.77e-22
|
||||||
| Bbox1_BBX-like | cd19821 | B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ... |
21-64 | 3.02e-17 | ||
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H. Pssm-ID: 380879 Cd Length: 44 Bit Score: 75.03 E-value: 3.02e-17
|
||||||
| BBOX | smart00336 | B-Box-type zinc finger; |
19-64 | 5.40e-06 | ||
B-Box-type zinc finger; Pssm-ID: 197662 [Multi-domain] Cd Length: 42 Bit Score: 43.09 E-value: 5.40e-06
|
||||||
| zf-B_box | pfam00643 | B-box zinc finger; |
22-64 | 6.44e-04 | ||
B-box zinc finger; Pssm-ID: 459886 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 6.44e-04
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
358-400 | 8.77e-22 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Pssm-ID: 461849 Cd Length: 44 Bit Score: 87.55 E-value: 8.77e-22
|
||||||
| Bbox1_BBX-like | cd19821 | B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ... |
21-64 | 3.02e-17 | ||
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H. Pssm-ID: 380879 Cd Length: 44 Bit Score: 75.03 E-value: 3.02e-17
|
||||||
| Bbox1 | cd19757 | B-box-type 1 zinc finger (Bbox1); The B-box-type zinc finger is a short zinc binding domain of ... |
22-64 | 3.68e-07 | ||
B-box-type 1 zinc finger (Bbox1); The B-box-type zinc finger is a short zinc binding domain of around 40 amino acid residues in length. It has been found in transcription factors, ribonucleoproteins and proto-oncoproteins, such as in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). The B-box-type zinc finger often presents in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain, in functionally unrelated proteins, most likely mediating protein-protein interactions. Based on different consensus sequences and the spacing of the 7-8 zinc-binding residues, the B-box-type zinc fingers can be divided into two groups, type 1 (Bbox1: C6H2) and type 2 (Bbox2: CHC3H2). This family corresponds to the type 1 B-box (Bbox1). Pssm-ID: 380815 [Multi-domain] Cd Length: 44 Bit Score: 46.34 E-value: 3.68e-07
|
||||||
| BBOX | smart00336 | B-Box-type zinc finger; |
19-64 | 5.40e-06 | ||
B-Box-type zinc finger; Pssm-ID: 197662 [Multi-domain] Cd Length: 42 Bit Score: 43.09 E-value: 5.40e-06
|
||||||
| zf-B_box | pfam00643 | B-box zinc finger; |
22-64 | 6.44e-04 | ||
B-box zinc finger; Pssm-ID: 459886 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 6.44e-04
|
||||||
| Bbox2_TRIM23_C-IX_rpt1 | cd19773 | first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and ... |
22-64 | 6.11e-03 | ||
first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins; TRIM23, also known as ADP-ribosylation factor domain-containing protein 1, GTP-binding protein ARD-1, or RING finger protein 46 (RNF46), is an E3 ubiquitin-protein ligase belonging to the C-IX subclass of TRIM (tripartite motif) family of proteins that are defined by an N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, two Bbox2, and a coiled coil region, as well as C-terminal ADP ribosylation factor (ARF) domains. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif. TRIM23 is involved in nuclear factor (NF)-kappaB activation. It mediates atypical lysine 27 (K27)-linked polyubiquitin conjugation to NF-kappaB essential modulator NEMO, also known as IKKgamma, which plays an important role in the NF-kappaB pathway, and this conjugation is essential for TLR3- and RIG-I/MDA5-mediated antiviral innate and inflammatory responses. It also regulates adipocyte differentiation via stabilization of the adipogenic activator peroxisome proliferator-activated receptor gamma (PPARgamma) through atypical ubiquitin conjugation to PPARgamma. Moreover, TRIM23 interacts with and polyubiquitinates yellow fever virus (YFV) NS5 to promote its binding to STAT2 and trigger type I interferon (IFN-I) signaling inhibition. Pssm-ID: 380831 Cd Length: 50 Bit Score: 34.62 E-value: 6.11e-03
|
||||||
| Blast search parameters | ||||
|
