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Conserved domains on  [gi|571461510|ref|XP_003528227|]
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transcription factor TCP5 [Glycine max]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCP2 super family cl23822
Protein TCP2; Provisional
 16-115 7.56e-27

Protein TCP2; Provisional


The actual alignment was detected with superfamily member PLN03105:

Pssm-ID: 474070  Cd Length: 324  Bit Score: 109.19  E-value: 7.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571461510  16 KQEGDTTTNIDKFSKASSTTSRQWSafrNP--RIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGL 93
Cdd:PLN03105  11 KHQEQQSRKLQRFSEDNTGLMRNWN---NPssRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGF 87

                         90       100
                 ....*....|....*....|..
gi 571461510  94 SQPSKVIDWLLEATKFDIDKLP 115
Cdd:PLN03105  88 DQPSKAVEWLINAASDSITDLP 109
 
Name Accession Description Interval E-value
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 16-115 7.56e-27

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 109.19  E-value: 7.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571461510  16 KQEGDTTTNIDKFSKASSTTSRQWSafrNP--RIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGL 93
Cdd:PLN03105  11 KHQEQQSRKLQRFSEDNTGLMRNWN---NPssRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGF 87

                         90       100
                 ....*....|....*....|..
gi 571461510  94 SQPSKVIDWLLEATKFDIDKLP 115
Cdd:PLN03105  88 DQPSKAVEWLINAASDSITDLP 109
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 55-125 9.42e-25

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 98.57  E-value: 9.42e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 571461510   55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPL-QFPQGFGQ 125
Cdd:pfam03634   2 SKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTgTIPANFSS 73
 
Name Accession Description Interval E-value
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 16-115 7.56e-27

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 109.19  E-value: 7.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571461510  16 KQEGDTTTNIDKFSKASSTTSRQWSafrNP--RIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGL 93
Cdd:PLN03105  11 KHQEQQSRKLQRFSEDNTGLMRNWN---NPssRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGF 87

                         90       100
                 ....*....|....*....|..
gi 571461510  94 SQPSKVIDWLLEATKFDIDKLP 115
Cdd:PLN03105  88 DQPSKAVEWLINAASDSITDLP 109
TCP2 PLN03106
Protein TCP2; Provisional
 25-145 4.42e-25

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 105.93  E-value: 4.42e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571461510  25 IDKFSKASSTTSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLL 104
Cdd:PLN03106  43 VVDGGGGGSVNNRLRRWHHSSRIIRVSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLI 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 571461510 105 EATKFDIDKLPPLQfpqgfGQFHHHPQTLFPFHESSAASHQ 145
Cdd:PLN03106 123 KAAEDSISELPSLN-----NSFPDTPKQLSDEKRTSDGTEQ 158
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 55-125 9.42e-25

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 98.57  E-value: 9.42e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 571461510   55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPL-QFPQGFGQ 125
Cdd:pfam03634   2 SKKDRHSKICTAGGLRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTgTIPANFSS 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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