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Conserved domains on  [gi|331219619|ref|XP_003322486|]
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uncharacterized protein PGTG_04023 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]

Protein Classification

transposase( domain architecture ID 1750089)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3335 super family cl41994
Transposase [Mobilome: prophages, transposons];
790-857 6.72e-08

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3335:

Pssm-ID: 442564 [Multi-domain]  Cd Length: 292  Bit Score: 55.26  E-value: 6.72e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331219619 790 IEDAGHVCLFLPKFHCELNPIELFWSYIKQAYRQEtHRCKTFSEYKALFERI--RQSCPLSTIRKYFRRI 857
Cdd:COG3335  220 LEEAGIELLFLPPYSPDLNPIERLWSKLKALLRKN-RAFRSKDELKAAVRSFldRISPDPERVRNWFRHA 288
 
Name Accession Description Interval E-value
COG3335 COG3335
Transposase [Mobilome: prophages, transposons];
790-857 6.72e-08

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442564 [Multi-domain]  Cd Length: 292  Bit Score: 55.26  E-value: 6.72e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331219619 790 IEDAGHVCLFLPKFHCELNPIELFWSYIKQAYRQEtHRCKTFSEYKALFERI--RQSCPLSTIRKYFRRI 857
Cdd:COG3335  220 LEEAGIELLFLPPYSPDLNPIERLWSKLKALLRKN-RAFRSKDELKAAVRSFldRISPDPERVRNWFRHA 288
transpos_IS630 NF033545
IS630 family transposase;
790-836 9.30e-03

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 39.16  E-value: 9.30e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 331219619 790 IEDAGHVCL-FLPKfHC-ELNPIELFWSYIKQAYRQEtHRCKTFSEYKA 836
Cdd:NF033545 244 LEEHGRIELhYLPP-YSpWLNPIERVWAVLKRRLLRN-RAFRSVDELRE 290
 
Name Accession Description Interval E-value
COG3335 COG3335
Transposase [Mobilome: prophages, transposons];
790-857 6.72e-08

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442564 [Multi-domain]  Cd Length: 292  Bit Score: 55.26  E-value: 6.72e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331219619 790 IEDAGHVCLFLPKFHCELNPIELFWSYIKQAYRQEtHRCKTFSEYKALFERI--RQSCPLSTIRKYFRRI 857
Cdd:COG3335  220 LEEAGIELLFLPPYSPDLNPIERLWSKLKALLRKN-RAFRSKDELKAAVRSFldRISPDPERVRNWFRHA 288
transpos_IS630 NF033545
IS630 family transposase;
790-836 9.30e-03

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 39.16  E-value: 9.30e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 331219619 790 IEDAGHVCL-FLPKfHC-ELNPIELFWSYIKQAYRQEtHRCKTFSEYKA 836
Cdd:NF033545 244 LEEHGRIELhYLPP-YSpWLNPIERVWAVLKRRLLRN-RAFRSVDELRE 290
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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