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Conserved domains on  [gi|302790079|ref|XP_002976807|]
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alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial [Selaginella moellendorffii]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11441299)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

EC:  1.6.-.-
Gene Ontology:  GO:0003954|GO:0006116
PubMed:  15590775|28181562

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
95-511 1.93e-92

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 287.41  E-value: 1.93e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  95 PRICILGGGFGGLYTALRLDSLVwtpEKRPQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNV 174
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 175 KSVSPfdavadDNKsspssiggKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRLEKRLEELERER 254
Cdd:COG1252   79 TGIDP------EAR--------TVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 255 FGPKQLPIdvAVVGSGYCGIELSATVAERL----------GERGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLEL 324
Cdd:COG1252  145 ERRRLLTI--VVVGGGPTGVELAGELAELLrkllrypgidPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHT 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 325 GYFVTNIalkdsnEPEKknkrVVLElkpansrntrkapPSTFLEADLVLWTVGGRALVPKA---FPTNGRGQTDTDETLR 401
Cdd:COG1252  223 GTRVTEV------DADG----VTLE-------------DGEEIPADTVIWAAGVKAPPLLAdlgLPTDRRGRVLVDPTLQ 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 402 VKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRYQHLGEMMTLGRYNGAVTpsfFEDI 481
Cdd:COG1252  280 VPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGL 356

                        410       420       430
                 ....*....|....*....|....*....|
gi 302790079 482 TLDGVLGHTARKLAYLYRLPTNEHRVKVGV 511
Cdd:COG1252  357 KLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
95-511 1.93e-92

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 287.41  E-value: 1.93e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  95 PRICILGGGFGGLYTALRLDSLVwtpEKRPQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNV 174
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 175 KSVSPfdavadDNKsspssiggKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRLEKRLEELERER 254
Cdd:COG1252   79 TGIDP------EAR--------TVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 255 FGPKQLPIdvAVVGSGYCGIELSATVAERL----------GERGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLEL 324
Cdd:COG1252  145 ERRRLLTI--VVVGGGPTGVELAGELAELLrkllrypgidPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHT 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 325 GYFVTNIalkdsnEPEKknkrVVLElkpansrntrkapPSTFLEADLVLWTVGGRALVPKA---FPTNGRGQTDTDETLR 401
Cdd:COG1252  223 GTRVTEV------DADG----VTLE-------------DGEEIPADTVIWAAGVKAPPLLAdlgLPTDRRGRVLVDPTLQ 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 402 VKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRYQHLGEMMTLGRYNGAVTpsfFEDI 481
Cdd:COG1252  280 VPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGL 356

                        410       420       430
                 ....*....|....*....|....*....|
gi 302790079 482 TLDGVLGHTARKLAYLYRLPTNEHRVKVGV 511
Cdd:COG1252  357 KLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 95-436 1.68e-29

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 117.80  E-value: 1.68e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079   95 PRICILGGGFGGLYTALRLDslvwtpEKRPQILLVDQSERFV-FKPMLYELLSKEVDVWEVAPLFADLLASTT--IRFLK 171
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLA------QLGGKVTLIEDEGTCPyGGCVLSKALLGAAEAPEIASLWADLYKRKEevVKKLN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  172 DNVKSVSPFDAVADDNKSspssigGKVYLE-----SGIQVEYDWLVLALGAETKMDMVPGALEHA-LPFSTLEDALRlek 245
Cdd:pfam07992  75 NGIEVLLGTEVVSIDPGA------KKVVLEelvdgDGETITYDRLVIATGARPRLPPIPGVELNVgFLVRTLDSAEA--- 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  246 rleelererFGPKQLPIDVAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELG 325
Cdd:pfam07992 146 ---------LRLKLLPKRVVVVGGGYIGVEL-AAALAKLG--KEVTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLG 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  326 YFVTNIalkdsnEPEKKNKRVVLElkpansrNTRKappstfLEADLVLWTVGGRA----LVPKAFPTNGRGQTDTDETLR 401
Cdd:pfam07992 214 TSVKEI------IGDGDGVEVILK-------DGTE------IDADLVVVAIGRRPntelLEAAGLELDERGGIVVDEYLR 274

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 302790079  402 VKgHPRIFAIGDSAGNKdssgrlLQtTAQVALQQA 436
Cdd:pfam07992 275 TS-VPGIYAAGDCRVGG------PE-LAQNAVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 93-519 9.52e-27

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 112.55  E-value: 9.52e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  93 KSPRICILGGGFGGLYTALRLDSlvwtpeKRPQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKD 172
Cdd:PTZ00318   9 KKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 173 NVKSVSPfdavadDNKS--SPSSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRLEKRLEEL 250
Cdd:PTZ00318  83 VVYDVDF------EEKRvkCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQC 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 251 ERERFGPkQLPIDVA-------VVGSGYCGIELSATVAERLGERGR-----------VQVIDVNSEICPSAPTGNREKAS 312
Cdd:PTZ00318 157 IERASLP-TTSVEERkrllhfvVVGGGPTGVEFAAELADFFRDDVRnlnpelveeckVTVLEAGSEVLGSFDQALRKYGQ 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 313 KVLSSRNVKLelgyfVTNIALKdsnepEKKNKRVVLElkpansrntrkapPSTFLEADLVLWT--VGGRALVP--KAFPT 388
Cdd:PTZ00318 236 RRLRRLGVDI-----RTKTAVK-----EVLDKEVVLK-------------DGEVIPTGLVVWStgVGPGPLTKqlKVDKT 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 389 NgRGQTDTDETLRVKGHPRIFAIGDSAGNKDssgRLLQTTAQVALQQADYAGWNLWAAINNRPLL-PFRYQHLGEMMTLG 467
Cdd:PTZ00318 293 S-RGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSLAYLG 368

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 302790079 468 RYNGAVTPSFFEditLDGVLGHTARKLAYLYRLPTNEHRVKVGVSWlAKSAV 519
Cdd:PTZ00318 369 NYSAIVQLGAFD---LSGFKALLFWRSAYLTILGSWRSKLYVLVNW-AGTAI 416
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
95-511 1.93e-92

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 287.41  E-value: 1.93e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  95 PRICILGGGFGGLYTALRLDSLVwtpEKRPQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKDNV 174
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 175 KSVSPfdavadDNKsspssiggKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRLEKRLEELERER 254
Cdd:COG1252   79 TGIDP------EAR--------TVTLADGRTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 255 FGPKQLPIdvAVVGSGYCGIELSATVAERL----------GERGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLEL 324
Cdd:COG1252  145 ERRRLLTI--VVVGGGPTGVELAGELAELLrkllrypgidPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHT 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 325 GYFVTNIalkdsnEPEKknkrVVLElkpansrntrkapPSTFLEADLVLWTVGGRALVPKA---FPTNGRGQTDTDETLR 401
Cdd:COG1252  223 GTRVTEV------DADG----VTLE-------------DGEEIPADTVIWAAGVKAPPLLAdlgLPTDRRGRVLVDPTLQ 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 402 VKGHPRIFAIGDSAGNKDSSGRLLQTTAQVALQQADYAGWNLWAAINNRPLLPFRYQHLGEMMTLGRYNGAVTpsfFEDI 481
Cdd:COG1252  280 VPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD---VGGL 356

                        410       420       430
                 ....*....|....*....|....*....|
gi 302790079 482 TLDGVLGHTARKLAYLYRLPTNEHRVKVGV 511
Cdd:COG1252  357 KLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 95-436 1.68e-29

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 117.80  E-value: 1.68e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079   95 PRICILGGGFGGLYTALRLDslvwtpEKRPQILLVDQSERFV-FKPMLYELLSKEVDVWEVAPLFADLLASTT--IRFLK 171
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLA------QLGGKVTLIEDEGTCPyGGCVLSKALLGAAEAPEIASLWADLYKRKEevVKKLN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  172 DNVKSVSPFDAVADDNKSspssigGKVYLE-----SGIQVEYDWLVLALGAETKMDMVPGALEHA-LPFSTLEDALRlek 245
Cdd:pfam07992  75 NGIEVLLGTEVVSIDPGA------KKVVLEelvdgDGETITYDRLVIATGARPRLPPIPGVELNVgFLVRTLDSAEA--- 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  246 rleelererFGPKQLPIDVAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELG 325
Cdd:pfam07992 146 ---------LRLKLLPKRVVVVGGGYIGVEL-AAALAKLG--KEVTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLG 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  326 YFVTNIalkdsnEPEKKNKRVVLElkpansrNTRKappstfLEADLVLWTVGGRA----LVPKAFPTNGRGQTDTDETLR 401
Cdd:pfam07992 214 TSVKEI------IGDGDGVEVILK-------DGTE------IDADLVVVAIGRRPntelLEAAGLELDERGGIVVDEYLR 274

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 302790079  402 VKgHPRIFAIGDSAGNKdssgrlLQtTAQVALQQA 436
Cdd:pfam07992 275 TS-VPGIYAAGDCRVGG------PE-LAQNAVAQG 301
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 93-519 9.52e-27

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 112.55  E-value: 9.52e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  93 KSPRICILGGGFGGLYTALRLDSlvwtpeKRPQILLVDQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIRFLKD 172
Cdd:PTZ00318   9 KKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 173 NVKSVSPfdavadDNKS--SPSSIGGKVYLESGIQVEYDWLVLALGAETKMDMVPGALEHALPFSTLEDALRLEKRLEEL 250
Cdd:PTZ00318  83 VVYDVDF------EEKRvkCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQC 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 251 ERERFGPkQLPIDVA-------VVGSGYCGIELSATVAERLGERGR-----------VQVIDVNSEICPSAPTGNREKAS 312
Cdd:PTZ00318 157 IERASLP-TTSVEERkrllhfvVVGGGPTGVEFAAELADFFRDDVRnlnpelveeckVTVLEAGSEVLGSFDQALRKYGQ 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 313 KVLSSRNVKLelgyfVTNIALKdsnepEKKNKRVVLElkpansrntrkapPSTFLEADLVLWT--VGGRALVP--KAFPT 388
Cdd:PTZ00318 236 RRLRRLGVDI-----RTKTAVK-----EVLDKEVVLK-------------DGEVIPTGLVVWStgVGPGPLTKqlKVDKT 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 389 NgRGQTDTDETLRVKGHPRIFAIGDSAGNKDssgRLLQTTAQVALQQADYAGWNLWAAINNRPLL-PFRYQHLGEMMTLG 467
Cdd:PTZ00318 293 S-RGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSLAYLG 368

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 302790079 468 RYNGAVTPSFFEditLDGVLGHTARKLAYLYRLPTNEHRVKVGVSWlAKSAV 519
Cdd:PTZ00318 369 NYSAIVQLGAFD---LSGFKALLFWRSAYLTILGSWRSKLYVLVNW-AGTAI 416
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 125-443 1.15e-21

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 96.03  E-value: 1.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 125 QILLVDQSERFVFKP-MLYELLSKEVDVWEvaplfaDLLASTTIRFLKDNVKsVSPFDAVAD---DNKsspssiggKVYL 200
Cdd:COG0446    7 EITVIEKGPHHSYQPcGLPYYVGGGIKDPE------DLLVRTPESFERKGID-VRTGTEVTAidpEAK--------TVTL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 201 ESGIQVEYDWLVLALGAETKMDMVPGA-LEHALPFSTLEDAlrlekRLEELERERFGPKqlpiDVAVVGSGYCGIElsat 279
Cdd:COG0446   72 RDGETLSYDKLVLATGARPRPPPIPGLdLPGVFTLRTLDDA-----DALREALKEFKGK----RAVVIGGGPIGLE---- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 280 VAERLGERGR-VQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELGYFVTNIalkdsnEPEKKnKRVVLElkpanSRNT 358
Cdd:COG0446  139 LAEALRKRGLkVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETVVAI------DGDDK-VAVTLT-----DGEE 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 359 rkappstfLEADLVLWTVGGR---ALVPKA-FPTNGRGQTDTDETLRVkGHPRIFAIGDSAGNKD--SSGRLLQTTAQVA 432
Cdd:COG0446  207 --------IPADLVVVAPGVRpntELAKDAgLALGERGWIKVDETLQT-SDPDVYAAGDCAEVPHpvTGKTVYIPLASAA 277

                        330
                 ....*....|.
gi 302790079 433 LQQADYAGWNL 443
Cdd:COG0446  278 NKQGRVAAENI 288
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
94-443 2.25e-12

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 68.63  E-value: 2.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  94 SPRICILGGGFGGLYTA--LRldslvwtpEKRPQ--ILLV-DQSERFVFKPMLYELLSKEVDVWEVAPLFADLLASTTIR 168
Cdd:COG1251    1 KMRIVIIGAGMAGVRAAeeLR--------KLDPDgeITVIgAEPHPPYNRPPLSKVLAGETDEEDLLLRPADFYEENGID 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 169 FLK-DNVKSVSPfdavadDNKsspssiggKVYLESGIQVEYDWLVLALGAETKMDMVPGA-LEHALPFSTLEDAlrlekr 246
Cdd:COG1251   73 LRLgTRVTAIDR------AAR--------TVTLADGETLPYDKLVLATGSRPRVPPIPGAdLPGVFTLRTLDDA------ 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 247 leELERERFGPKQlpiDVAVVGSGYCGIElsatVAERLGERG-RVQVIDVNSEICPSA-PtgnrEKASKVLS----SRNV 320
Cdd:COG1251  133 --DALRAALAPGK---RVVVIGGGLIGLE----AAAALRKRGlEVTVVERAPRLLPRQlD----EEAGALLQrlleALGV 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 321 KLELGYFVTNIalkdsnEPEKKNKRVVLelkpANSRntrkappstFLEADLVLWTVGGR---ALVPKAFPTNGRGqTDTD 397
Cdd:COG1251  200 EVRLGTGVTEI------EGDDRVTGVRL----ADGE---------ELPADLVVVAIGVRpntELARAAGLAVDRG-IVVD 259

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 302790079 398 ETLRVkGHPRIFAIGDSA-GNKDSSGRLLQTTAQVALQQADYAGWNL 443
Cdd:COG1251  260 DYLRT-SDPDIYAAGDCAeHPGPVYGRRVLELVAPAYEQARVAAANL 305
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 255-443 2.66e-12

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 68.96  E-value: 2.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 255 FGPKQLPIDVAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELGYFVTNIalk 334
Cdd:COG1249  162 LELEELPKSLVVIGGGYIGLEF-AQIFARLG--SEVTLVERGDRLLPGEDPEISEALEKALEKEGIDILTGAKVTSV--- 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 335 dsnepEKKNKRVVLELKPANSrntrkappSTFLEADLVLWTVGGRALVPK------AFPTNGRGQTDTDETLRVkGHPRI 408
Cdd:COG1249  236 -----EKTGDGVTVTLEDGGG--------EEAVEADKVLVATGRRPNTDGlgleaaGVELDERGGIKVDEYLRT-SVPGI 301

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 302790079 409 FAIGDSAGnkdssGRLLqttAQVALQQADYAGWNL 443
Cdd:COG1249  302 YAIGDVTG-----GPQL---AHVASAEGRVAAENI 328
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 255-455 8.83e-10

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 60.96  E-value: 8.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 255 FGPKQLPIDVAVVGSGYCGIELsATVAERLGErgRVQVIDVNSEICPSAPTGNREKASKVLSSRnVKLELGYFVTNIalk 334
Cdd:PRK06292 163 FELDKLPKSLAVIGGGVIGLEL-GQALSRLGV--KVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSV--- 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 335 dsnepEKKNKRVVLELKPANSRNTrkappstfLEADLVLWTVGGRALVPK------AFPTNGRGQTDTDETLRvKGHPRI 408
Cdd:PRK06292 236 -----EKSGDEKVEELEKGGKTET--------IEADYVLVATGRRPNTDGlglentGIELDERGRPVVDEHTQ-TSVPGI 301

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 302790079 409 FAIGDSAGnkdssGRLLqttAQVALQQADYAGWNLWAAIN---NRPLLPF 455
Cdd:PRK06292 302 YAAGDVNG-----KPPL---LHEAADEGRIAAENAAGDVAggvRYHPIPS 343
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 264-349 9.95e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 43.73  E-value: 9.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079  264 VAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELGYFVTNIalkdsnEPEKKN 343
Cdd:pfam00070   2 VVVVGGGYIGLEL-AGALARLG--SKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLNTTVEAI------EGNGDG 72


                  ....*.
gi 302790079  344 KRVVLE 349
Cdd:pfam00070  73 VVVVLT 78
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 257-416 1.29e-05

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 47.83  E-value: 1.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 257 PKQLPIDVAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICP------SAPtgnrekASKVLSSRNVKLELGYFVTN 330
Cdd:PRK06416 168 LDEVPKSLVVIGGGYIGVEF-ASAYASLG--AEVTIVEALPRILPgedkeiSKL------AERALKKRGIKIKTGAKAKK 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 331 IalkdsnepEKKNKRVVLELKPANSRNTrkappstfLEADLVLWTVgGRalVPKafpTNG-----------RGQTDTDET 399
Cdd:PRK06416 239 V--------EQTDDGVTVTLEDGGKEET--------LEADYVLVAV-GR--RPN---TENlgleelgvktdRGFIEVDEQ 296

                        170
                 ....*....|....*..
gi 302790079 400 LRvKGHPRIFAIGDSAG 416
Cdd:PRK06416 297 LR-TNVPNIYAIGDIVG 312
PRK06327 PRK06327
dihydrolipoamide dehydrogenase; Validated
 258-416 7.24e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235779 [Multi-domain]  Cd Length: 475  Bit Score: 42.22  E-value: 7.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 258 KQLPIDVAVVGSGYCGIELsATVAERLGerGRVQVIDVNSEICPSAPTGNREKASKVLSSRNVKLELGYFVTNIalkdsn 337
Cdd:PRK06327 180 TEVPKKLAVIGAGVIGLEL-GSVWRRLG--AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEI------ 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302790079 338 epEKKNKRVVLELkpansrNTRKAPPSTfLEADLVLWTVGGRA----LVPKA--FPTNGRGQTDTDETLRVkGHPRIFAI 411
Cdd:PRK06327 251 --KTGGKGVSVAY------TDADGEAQT-LEVDKLIVSIGRVPntdgLGLEAvgLKLDERGFIPVDDHCRT-NVPNVYAI 320


                 ....*
gi 302790079 412 GDSAG 416
Cdd:PRK06327 321 GDVVR 325
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 356-413 8.57e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 38.70  E-value: 8.57e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302790079 356 RNTRKAPPSTFLEADLVLWTVG----GRALVPKAFPTNGRGQTDTDETLRVKGHPRIFAIGD 413
Cdd:PRK12771 356 RPSPVTGEEETLEADLVVLAIGqdidSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGD 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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