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Conserved domains on  [gi|302857967|ref|XP_002959987|]
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uncharacterized protein VOLCADRAFT_72158, partial [Volvox carteri f. nagariensis]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-166 2.87e-122

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 341.22  E-value: 2.87e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:CHL00033   3 RSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:CHL00033  83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162


                 ....*.
gi 302857967 161 MTGRLT 166
Cdd:CHL00033 163 ITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-166 2.87e-122

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 341.22  E-value: 2.87e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:CHL00033   3 RSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:CHL00033  83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162


                 ....*.
gi 302857967 161 MTGRLT 166
Cdd:CHL00033 163 ITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-164 6.62e-103

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 292.39  E-value: 6.62e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:COG5713    3 RTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGLIH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:COG5713   83 ASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNWLK 162


                 ....
gi 302857967 161 MTGR 164
Cdd:COG5713  163 TTGR 166
TPR_12 pfam13424
Tetratricopeptide repeat;
33-102 4.97e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.68  E-value: 4.97e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 302857967   33 AFSYYRNGMSAQAEGEYAEALQNYYEAMRL-----EVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 72-102 5.55e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 5.55e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 302857967    72 ILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 89-159 1.05e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.38  E-value: 1.05e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302857967  89 ALEYYYQALERNPSLSSALNNIAVIYhyrgeqaIENGQseisqilFEKAADYWKEAIRLAPTNYIEALNWL 159
Cdd:cd24142   19 ALKFLQRALELEPNNVEALELLGEIL-------LELGD-------VEEAREVLLRAIELDPDGGYEKYLYL 75
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-166 2.87e-122

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 341.22  E-value: 2.87e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:CHL00033   3 RSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:CHL00033  83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162


                 ....*.
gi 302857967 161 MTGRLT 166
Cdd:CHL00033 163 ITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-164 6.62e-103

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 292.39  E-value: 6.62e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:COG5713    3 RTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGLIH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:COG5713   83 ASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNWLK 162


                 ....
gi 302857967 161 MTGR 164
Cdd:COG5713  163 TTGR 166
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-164 3.43e-102

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 290.81  E-value: 3.43e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   1 RTQRNDNFIDKTFTVVADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIH 80
Cdd:PRK02603   3 RTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  81 TSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWLK 160
Cdd:PRK02603  83 ASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162


                 ....
gi 302857967 161 MTGR 164
Cdd:PRK02603 163 TTGR 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-159 1.28e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.63  E-value: 1.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  43 AQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHyrgeqai 122
Cdd:COG3914   88 LQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR------- 157

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 302857967 123 ENGQseisqilFEKAADYWKEAIRLAPtNYIEALNWL 159
Cdd:COG3914  158 RLGR-------LEEAIAALRRALELDP-DNAEALNNL 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 33-159 1.36e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 1.36e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  33 AFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAV 112
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 302857967 113 IYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPTNYIEALNWL 159
Cdd:COG3914  189 ALQDLGR--------------LEEAIAAYRRALELDPDNADAHSNLL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-167 6.57e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 6.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  33 AFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAV 112
Cdd:COG0457   42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL 118

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 302857967 113 IYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPtNYIEALNWLKMTGRLTG 167
Cdd:COG0457  119 ALLELGR--------------YDEAIEAYERALELDP-DDADALYNLGIALEKLG 158
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-159 1.23e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 1.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  31 KQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNI 110
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 302857967 111 AVIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPtNYIEALNWL 159
Cdd:COG0457   83 GLALQALGR--------------YEEALEDYDKALELDP-DDAEALYNL 116
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-159 1.82e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 1.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  31 KQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEvdaYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNI 110
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 302857967 111 AVIYHYRG--EQAIENGQSEISQILFEKAADYWKEAIRLAPTNYIEALNWL 159
Cdd:COG0457  151 GIALEKLGryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
17-151 4.11e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 4.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  17 ADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQA 96
Cdd:COG4785   57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE---AYNNRGLAYLLLGDYDAALEDFDRA 133

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 302857967  97 LERNPSLSSALNNIAVIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPTN 151
Cdd:COG4785  134 LELDPDYAYAYLNRGIALYYLGR--------------YELAIADLEKALELDPND 174
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 40-151 4.46e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 4.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  40 GMSAQAEGEYAEALQNYYEAMRLEVDaydRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGE 119
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPD---NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                         90       100       110
                 ....*....|....*....|....*....|..
gi 302857967 120 qaiengqseisqilFEKAADYWKEAIRLAPTN 151
Cdd:COG4235  101 --------------YAEAIAAWQKLLALLPAD 118
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-159 1.01e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  33 AFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAV 112
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 302857967 113 IYHYRGeqaiengqseisqiLFEKAADYWKEAIRLAPTNyIEALNWL 159
Cdd:COG2956   85 DYLKAG--------------LLDRAEELLEKLLELDPDD-AEALRLL 116
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
29-159 1.61e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  29 REKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAY----DRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLS 104
Cdd:COG4785   28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 302857967 105 SALNNIAVIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPtNYIEALNWL 159
Cdd:COG4785  108 EAYNNRGLAYLLLGD--------------YDAALEDFDRALELDP-DYAYAYLNR 147
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 17-149 1.79e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  17 ADILLKVLPTSQREKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLevdAYDRSYILYNIGLIHTSNGEHGRALEYYYQA 96
Cdd:COG5010   38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL---DPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 302857967  97 LERNPSLSSALNNIAVIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAP 149
Cdd:COG5010  115 LALSPDNPNAYSNLAALLLSLGQ--------------DDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
43-152 3.58e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 3.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  43 AQAEGEYAEALQNYYEAMRLevdAYDRSYILYNIGLIHTSNGEHGRALEYYyQALERNPSLSSALNNIAVIYHYRGEqai 122
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL---DPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGD--- 74

                         90       100       110
                 ....*....|....*....|....*....|
gi 302857967 123 engqseisqilFEKAADYWKEAIRLAPTNY 152
Cdd:COG3063   75 -----------YDEALAYLERALELDPSAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 36-151 4.80e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 4.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  36 YYRNGMSAQAEGEYAEALQNYYEAMRLEVDaydRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYH 115
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPD---EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 302857967 116 YRGEqaiengqseisqilFEKAADYWKEAIRLAPTN 151
Cdd:COG4783  118 ALGR--------------PDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 18-151 8.71e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 8.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  18 DILLKVLPTSQREKQAfsYYRNGMSAQAEGEYAEALQNYYEAMRLEVDaydRSYILYNIGLIHTSNGEHGRALEYYYQAL 97
Cdd:COG2956   29 DLLEEALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPD---RAEALLELAQDYLKAGLLDRAEELLEKLL 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 302857967  98 ERNPSLSSALNNIAVIYHYRG--EQAIE--------NGQS-----EISQIL-----FEKAADYWKEAIRLAPTN 151
Cdd:COG2956  104 ELDPDDAEALRLLAEIYEQEGdwEKAIEvlerllklGPENahaycELAELYleqgdYDEAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 32-151 1.13e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  32 QAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVdayDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIA 111
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 302857967 112 VIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPTN 151
Cdd:COG4783   80 LALLKAGD--------------YDEALALLEKALKLDPEH 105
TPR_12 pfam13424
Tetratricopeptide repeat;
33-102 4.97e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.68  E-value: 4.97e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 302857967   33 AFSYYRNGMSAQAEGEYAEALQNYYEAMRL-----EVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 20-106 1.40e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  20 LLKVLPTSQREKQAfsYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALER 99
Cdd:COG1729   19 FLKRYPNSPLAPDA--LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKK 96


                 ....*..
gi 302857967 100 NPSLSSA 106
Cdd:COG1729   97 YPDSEAA 103
TPR_1 pfam00515
Tetratricopeptide repeat;
70-102 1.98e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.98e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 302857967   70 SYILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 72-102 5.55e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 5.55e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 302857967    72 ILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-151 7.05e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 7.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  30 EKQAFSYYRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDrsyILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNN 109
Cdd:COG2956  141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR---ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR 217

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 302857967 110 IAVIYHYRGEQaiengqseisqilfEKAADYWKEAIRLAPTN 151
Cdd:COG2956  218 LAELYEKLGDP--------------EEALELLRKALELDPSD 245
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 43-157 8.70e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 8.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  43 AQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEqai 122
Cdd:COG5010   27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--- 103

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 302857967 123 engqseisqilFEKAADYWKEAIRLAPTNYIEALN 157
Cdd:COG5010  104 -----------KDEAKEYYEKALALSPDNPNAYSN 127
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 89-159 1.05e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.38  E-value: 1.05e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302857967  89 ALEYYYQALERNPSLSSALNNIAVIYhyrgeqaIENGQseisqilFEKAADYWKEAIRLAPTNYIEALNWL 159
Cdd:cd24142   19 ALKFLQRALELEPNNVEALELLGEIL-------LELGD-------VEEAREVLLRAIELDPDGGYEKYLYL 75
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 37-102 1.27e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 1.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 302857967   37 YRNGMSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPS 102
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 73-159 3.89e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 35.75  E-value: 3.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967  73 LYNIGLIHTSNGEHGRALEYYYQALERNPSLSSALNNIAVIYHYRGEqaiengqseisqilFEKAADYWKEAIRLAPTNy 152
Cdd:COG4235   20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGD--------------TEEAEELLERALALDPDN- 84


                 ....*..
gi 302857967 153 IEALNWL 159
Cdd:COG4235   85 PEALYLL 91
TPR_12 pfam13424
Tetratricopeptide repeat;
68-148 8.18e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 33.90  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302857967   68 DRSYILYNIGLIHTSNGEHGRALEYYYQALER--------NPSLSSALNNIAVIYHYRGEqaiengqseisqilFEKAAD 139
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGR--------------YEEALE 66


                  ....*....
gi 302857967  140 YWKEAIRLA 148
Cdd:pfam13424  67 LLERALALA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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