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Conserved domains on  [gi|2158410879|ref|XP_002630397|]
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Protein CBG04336 [Caenorhabditis briggsae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T-box pfam00907
T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box ...
 110-290 2.80e-76

T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations.


:

Pssm-ID: 459990  Cd Length: 182  Bit Score: 240.54  E-value: 2.80e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 110 VTLNNAGLWKKFNSP-MEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITSIQ 188
Cdd:pfam00907   1 VSLENKELWKKFHELgTEMIITKS-GRRMFPTLKVSVSGLDPNAKYSVLLDIVPVDDKRYKFHNGKWVVAGKAEPHSPPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 189 KIKHKSGGQTGMFWMDGPISFEQIRLTNNPETeKKDHICLQSMHKWRPVVTIRKLENGDENSDFD--EEFRIENVWFMAV 266
Cdd:pfam00907  80 VYIHPDSPATGSHWMKQPVSFDKLKLTNNKED-KNGHIILNSMHKYQPRLHIVRVGGDEPSLPEEnvKTFVFPETEFIAV 158

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:pfam00907 159 TAYQNEEITQLKIDNNPFAKGFRD 182
7TM_GPCR_Srh super family cl11665
Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis ...
 403-612 1.55e-71

Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


The actual alignment was detected with superfamily member pfam10327:

Pssm-ID: 416353  Cd Length: 303  Bit Score: 232.82  E-value: 1.55e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 403 IGIIILLMVSMMKCLTLCFVRKHQGIAQIMHRHVINPFLITLITLSTVSGTMLSLVTFMLSGIERDQQMDFVKMNYPNYY 482
Cdd:pfam10327  94 MTIFVFLLSFQLESLLLCFVRKHQAIAKILSKHVIPKWLYIFLYILCHIFPFLTAFLFYQSGLSREEQLEYVKENYPEYL 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 483 TEFSQLFNFAIYEFNFIFKLIAVGCFFAVTLFSLFFSFLIIDIFTLLSGVKKKISAKNFQRHQAAVISLIAQLATSSMCL 562
Cdd:pfam10327 174 SQFSSLPNFAIYDYNPWLIVFGILAIFGGSLSFLILVYLTVDMFRMLKRLRKKISAQTYQKHRAALRSLIAQFATSPVCI 253

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2158410879 563 LPPVGLVIAIISHYEHSQAVVRLLLAIFALHSTVNAIILIISTPTYRGYI 612
Cdd:pfam10327 254 LPPFAFVVVVLFPIEYSQEISEILLAIFSTHSSVNSIVLILTTPPYRKFL 303
 
Name Accession Description Interval E-value
T-box pfam00907
T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box ...
 110-290 2.80e-76

T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations.


Pssm-ID: 459990  Cd Length: 182  Bit Score: 240.54  E-value: 2.80e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 110 VTLNNAGLWKKFNSP-MEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITSIQ 188
Cdd:pfam00907   1 VSLENKELWKKFHELgTEMIITKS-GRRMFPTLKVSVSGLDPNAKYSVLLDIVPVDDKRYKFHNGKWVVAGKAEPHSPPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 189 KIKHKSGGQTGMFWMDGPISFEQIRLTNNPETeKKDHICLQSMHKWRPVVTIRKLENGDENSDFD--EEFRIENVWFMAV 266
Cdd:pfam00907  80 VYIHPDSPATGSHWMKQPVSFDKLKLTNNKED-KNGHIILNSMHKYQPRLHIVRVGGDEPSLPEEnvKTFVFPETEFIAV 158

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:pfam00907 159 TAYQNEEITQLKIDNNPFAKGFRD 182
T-box cd00182
DNA-binding domain of the T-box transcription factor family; The T-box family is an ancient ...
 108-282 3.56e-72

DNA-binding domain of the T-box transcription factor family; The T-box family is an ancient family of transcription factors which plays a multitude of diverse functions throughout development. The founding member of the family is Brachyury (also known as TBXT, or T). Members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns. The T-box factors in Caenorhabditis elegans have evolved very differently than those in other organisms; its genome contains 22 T-box genes which encode factors which are diverse in DNA-binding specificity, function and sequence, and only 3 of these factors fall into the conserved T-box subfamilies.


Pssm-ID: 410312  Cd Length: 176  Bit Score: 229.79  E-value: 3.56e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPIT- 185
Cdd:cd00182     1 ITVSLRNEELWKKFHElGTEMIVTKS-GRRMFPTLEYSVSGLDPNKLYSVSLHFERVDNKRYKFNNGKWVPSGKAEPPPe 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 186 SIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFDEEFRIENVWFMA 265
Cdd:cd00182    80 PSRIYVHPDGPQTGSFWMKKGVSFDKVKITNNKEDKKEGHILLHSMHKYIPVLTIYEVDDNGLLSKLVKEFRFPETEFIA 159

                         170
                  ....*....|....*..
gi 2158410879 266 VTMYQNQAVKNLKVENN 282
Cdd:cd00182   160 VTAYQNDEITQLKIDNN 176
7TM_GPCR_Sri pfam10327
Serpentine type 7TM GPCR chemoreceptor Sri; Chemoreception is mediated in Caenorhabditis ...
 403-612 1.55e-71

Serpentine type 7TM GPCR chemoreceptor Sri; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sri is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 313539  Cd Length: 303  Bit Score: 232.82  E-value: 1.55e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 403 IGIIILLMVSMMKCLTLCFVRKHQGIAQIMHRHVINPFLITLITLSTVSGTMLSLVTFMLSGIERDQQMDFVKMNYPNYY 482
Cdd:pfam10327  94 MTIFVFLLSFQLESLLLCFVRKHQAIAKILSKHVIPKWLYIFLYILCHIFPFLTAFLFYQSGLSREEQLEYVKENYPEYL 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 483 TEFSQLFNFAIYEFNFIFKLIAVGCFFAVTLFSLFFSFLIIDIFTLLSGVKKKISAKNFQRHQAAVISLIAQLATSSMCL 562
Cdd:pfam10327 174 SQFSSLPNFAIYDYNPWLIVFGILAIFGGSLSFLILVYLTVDMFRMLKRLRKKISAQTYQKHRAALRSLIAQFATSPVCI 253

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2158410879 563 LPPVGLVIAIISHYEHSQAVVRLLLAIFALHSTVNAIILIISTPTYRGYI 612
Cdd:pfam10327 254 LPPFAFVVVVLFPIEYSQEISEILLAIFSTHSSVNSIVLILTTPPYRKFL 303
TBOX smart00425
Domain first found in the mice T locus (Brachyury) protein;
108-292 5.85e-59

Domain first found in the mice T locus (Brachyury) protein;


Pssm-ID: 214656  Cd Length: 190  Bit Score: 195.56  E-value: 5.85e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879  108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:smart00425   1 IKVSLEDKELWRKFHElGTEMIVTKS-GRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMP 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879  187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPEtEKKDH--ICLQSMHKWRPVVTIRKLEN-GDENSDFDEEFRIENVWF 263
Cdd:smart00425  80 SRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQS-DKNGHlqIILNSMHKYQPRLHIVEVDDiSKEILSQFKTFVFPETQF 158

                          170       180
                   ....*....|....*....|....*....
gi 2158410879  264 MAVTMYQNQAVKNLKVENNKFASGFRETG 292
Cdd:smart00425 159 IAVTAYQNQKITKLKIDNNPFAKGFRDQG 187
 
Name Accession Description Interval E-value
T-box pfam00907
T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box ...
 110-290 2.80e-76

T-box; The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations.


Pssm-ID: 459990  Cd Length: 182  Bit Score: 240.54  E-value: 2.80e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 110 VTLNNAGLWKKFNSP-MEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITSIQ 188
Cdd:pfam00907   1 VSLENKELWKKFHELgTEMIITKS-GRRMFPTLKVSVSGLDPNAKYSVLLDIVPVDDKRYKFHNGKWVVAGKAEPHSPPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 189 KIKHKSGGQTGMFWMDGPISFEQIRLTNNPETeKKDHICLQSMHKWRPVVTIRKLENGDENSDFD--EEFRIENVWFMAV 266
Cdd:pfam00907  80 VYIHPDSPATGSHWMKQPVSFDKLKLTNNKED-KNGHIILNSMHKYQPRLHIVRVGGDEPSLPEEnvKTFVFPETEFIAV 158

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:pfam00907 159 TAYQNEEITQLKIDNNPFAKGFRD 182
T-box cd00182
DNA-binding domain of the T-box transcription factor family; The T-box family is an ancient ...
 108-282 3.56e-72

DNA-binding domain of the T-box transcription factor family; The T-box family is an ancient family of transcription factors which plays a multitude of diverse functions throughout development. The founding member of the family is Brachyury (also known as TBXT, or T). Members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns. The T-box factors in Caenorhabditis elegans have evolved very differently than those in other organisms; its genome contains 22 T-box genes which encode factors which are diverse in DNA-binding specificity, function and sequence, and only 3 of these factors fall into the conserved T-box subfamilies.


Pssm-ID: 410312  Cd Length: 176  Bit Score: 229.79  E-value: 3.56e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPIT- 185
Cdd:cd00182     1 ITVSLRNEELWKKFHElGTEMIVTKS-GRRMFPTLEYSVSGLDPNKLYSVSLHFERVDNKRYKFNNGKWVPSGKAEPPPe 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 186 SIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFDEEFRIENVWFMA 265
Cdd:cd00182    80 PSRIYVHPDGPQTGSFWMKKGVSFDKVKITNNKEDKKEGHILLHSMHKYIPVLTIYEVDDNGLLSKLVKEFRFPETEFIA 159

                         170
                  ....*....|....*..
gi 2158410879 266 VTMYQNQAVKNLKVENN 282
Cdd:cd00182   160 VTAYQNDEITQLKIDNN 176
7TM_GPCR_Sri pfam10327
Serpentine type 7TM GPCR chemoreceptor Sri; Chemoreception is mediated in Caenorhabditis ...
 403-612 1.55e-71

Serpentine type 7TM GPCR chemoreceptor Sri; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sri is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 313539  Cd Length: 303  Bit Score: 232.82  E-value: 1.55e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 403 IGIIILLMVSMMKCLTLCFVRKHQGIAQIMHRHVINPFLITLITLSTVSGTMLSLVTFMLSGIERDQQMDFVKMNYPNYY 482
Cdd:pfam10327  94 MTIFVFLLSFQLESLLLCFVRKHQAIAKILSKHVIPKWLYIFLYILCHIFPFLTAFLFYQSGLSREEQLEYVKENYPEYL 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 483 TEFSQLFNFAIYEFNFIFKLIAVGCFFAVTLFSLFFSFLIIDIFTLLSGVKKKISAKNFQRHQAAVISLIAQLATSSMCL 562
Cdd:pfam10327 174 SQFSSLPNFAIYDYNPWLIVFGILAIFGGSLSFLILVYLTVDMFRMLKRLRKKISAQTYQKHRAALRSLIAQFATSPVCI 253

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2158410879 563 LPPVGLVIAIISHYEHSQAVVRLLLAIFALHSTVNAIILIISTPTYRGYI 612
Cdd:pfam10327 254 LPPFAFVVVVLFPIEYSQEISEILLAIFSTHSSVNSIVLILTTPPYRKFL 303
TBOX smart00425
Domain first found in the mice T locus (Brachyury) protein;
108-292 5.85e-59

Domain first found in the mice T locus (Brachyury) protein;


Pssm-ID: 214656  Cd Length: 190  Bit Score: 195.56  E-value: 5.85e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879  108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:smart00425   1 IKVSLEDKELWRKFHElGTEMIVTKS-GRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMP 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879  187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPEtEKKDH--ICLQSMHKWRPVVTIRKLEN-GDENSDFDEEFRIENVWF 263
Cdd:smart00425  80 SRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQS-DKNGHlqIILNSMHKYQPRLHIVEVDDiSKEILSQFKTFVFPETQF 158

                          170       180
                   ....*....|....*....|....*....
gi 2158410879  264 MAVTMYQNQAVKNLKVENNKFASGFRETG 292
Cdd:smart00425 159 IAVTAYQNQKITKLKIDNNPFAKGFRDQG 187
T-box_TBXT_TBX19-like cd20192
DNA-binding domain of T-box transcription factor T, T-box transcription factor 19 and related ...
 108-290 5.19e-44

DNA-binding domain of T-box transcription factor T, T-box transcription factor 19 and related T-box proteins; Tbx19 (also known as Tpit) is a T-box factor restricted to two pituitary (pro-opiomelanocortin) POMC-expressing lineages, the corticotrophs and melanotrophs; it controls terminal differentiation of these lineages. TBX19 activates POMC gene transcription with the cooperation of another transcription factor Pitx1. TBXT, also known as Brachyury protein, or protein T, is a transcription factor needed for posterior mesoderm formation and differentiation as well as for the notochord development during embryogenesis. It binds to a 24 base-pair (bp) palindromic site (called the T site) and activates gene transcription when bound to such a site. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. TBXT is the founding member of the T-box family, members of which share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410318  Cd Length: 180  Bit Score: 155.11  E-value: 5.19e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNSPM-EMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20192     1 IRVTLEDRELWKKFHSLTnEMIVTKS-GRRMFPVLKVSVSGLDPNAMYSVLLDFVQVDNHRWKYVNGEWVPGGKAEPPPP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPETEkkDHICLQSMHKWRPVVTIRKlENGDENSDFDEEFRIENVWFMAV 266
Cdd:cd20192    80 SSVYVHPDSPNFGAHWMKGPVSFSKVKLTNKPNGE--GQIMLNSLHKYEPRVHIVR-VGSNNHERLVSTFSFPETQFIAV 156

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20192   157 TAYQNEEITALKIKYNPFAKAFLD 180
T-box-like cd20682
T-box DNA-binding domain; uncharacterized subfamily; The T-box family is an ancient group that ...
 108-290 4.81e-42

T-box DNA-binding domain; uncharacterized subfamily; The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.


Pssm-ID: 410333  Cd Length: 191  Bit Score: 150.23  E-value: 4.81e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKF-NSPMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYR--FTDNKWDDYARGDPI 184
Cdd:cd20682     1 IQVELCSRELWLQFhNLGNEMIITKA-GRRMFPALKVKLTGLDPDKLYIVWVDIVPVDSNRYRyvYHSSKWVVAGSGDVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 185 TSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFDE------EFRI 258
Cdd:cd20682    80 PPANRYIHPDSPASGKYWMSQIVSFDKLKLTNNKEPKQKGQISLHSMHKYQPRIHIQPVEDDGRNVEKAInsskalSFEF 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2158410879 259 ENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20682   160 PETSFITVTAYQNQQITKLKIASNPFAKGFRD 191
T-box_MGA-like cd20195
DNA-binding domain of MAX gene-associated protein and related T-box proteins; MGA (also known ...
 108-290 5.91e-41

DNA-binding domain of MAX gene-associated protein and related T-box proteins; MGA (also known as MGAP, MAX dimerization protein, MAD5, MXD5) is a dual-specificity transcription factor that regulates the expression of both, MAX-network and T-box family target genes. MGA functions as a repressor or an activator; it binds to 5'-AATTTCACACCTAGGTGTGAAATT-3' core sequence. Its function is activated by heterodimerization with MAX. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410321  Cd Length: 186  Bit Score: 147.19  E-value: 5.91e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKF-NSPMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20195     1 ITVTLENNSMWNEFyRCGTEMILTKQ-GRRMFPYCRFRISGLDPDRNYILVMDISPVDNFRYRWNGRWWEPSGKAEPHVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPeTEKKDHICLQSMHKWRP----VVTIRKLENGDENSDFDEEFRIENVW 262
Cdd:cd20195    80 GRVFIHPESPATGRHWMDQPVSFYKLKLTNNT-LDQEGHIILHSMHRYLPrlhvVPADKEVDVIQLNGPDVHTFTFPQTE 158

                         170       180
                  ....*....|....*....|....*...
gi 2158410879 263 FMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20195   159 FFAVTAYQNKQITQLKIDYNPFAKGFRE 186
T-box_TBX4_5-like cd20189
DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins; This ...
 108-290 1.60e-40

DNA-binding domain of T-box transcription factor 4 and 5, and related T-box proteins; This subfamily includes the T-box transcription factors TBX4 and TBX5 which play important roles in vertebrate limb and heart development, and in lung and trachea development. TBX4 is needed for normal skeletal and muscular hindlimb development and is involved in super-enhancer-driven transcriptional programs underlying features specific to lung fibroblasts. TBX5 plays a role in regulating cardiac conduction system function, and in coordinating forelimb muscle pattern. Mutations in human TBX5 and TBX4 are associated with Holt-Oram syndrome and Small Patella syndrome, respectively. Both syndromes are characterized by limb defects in addition to other abnormalities. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410315  Cd Length: 185  Bit Score: 145.65  E-value: 1.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20189     1 IKVFLENRELWQKFHEvGTEMIITKA-GRRMFPSIKVKVTGLNPKTKYILLMDIVPADDHRYKFHDSEWVVAGKAEPAMP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKlenGDENSDFDEE------FRIEN 260
Cdd:cd20189    80 GRLYVHPDSPATGAHWMRQLVSFQKLKLTNN-HLDQFGHIILNSMHKYQPRIHIVQ---ADDNNAFGSKntafstHVFPE 155

                         170       180       190
                  ....*....|....*....|....*....|
gi 2158410879 261 VWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20189   156 TAFIAVTAYQNHQITQLKIENNPFAKGFRG 185
T-box_Drosocross-like cd20681
DNA-binding domain of Drosophila Dorsocross and related T-box proteins; Drosophila Dorsocross ...
 108-290 5.00e-40

DNA-binding domain of Drosophila Dorsocross and related T-box proteins; Drosophila Dorsocross (Doc) includes three Dorsocross paralogs, Doc1-3. These are key cardiogenic T-box transcription factors during specification and differentiation of heart cells. Drosophila Doc also functions in caudal visceral mesoderm development, and modulates Notch signaling in the developing Drosophila eye by regulating the expression of Delta in the eye imaginal discs. Doc also functions in the morphogenesis of epithelial tissues: in Drosophila, which possesses a single extraembryonic (EE) membrane, it is essential for EE epithelia tissue maintenance while in Tribolium castaneum, which has 2 EE membranes, Doc plays a major role in EE morphogenetic events throughout development without affecting EE tissue specificity or maintenance. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410332  Cd Length: 186  Bit Score: 144.40  E-value: 5.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKF-NSPMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNK-WDDYARGDPIT 185
Cdd:cd20681     1 VKVTLKNRDLWQQFhREGTEMIITKS-GRRMFPSLRLSVSGLEPDARYCVLLEMVLASDCRFKYSGNGgWVPAGGAEPQP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 186 SIQK--IKHKSGGQTGMFWMDGPISFEQIRLTNNPeTEKKDHICLQSMHKWRP-VVTIRKLENGDENSDFDEEFRIENVW 262
Cdd:cd20681    80 PLPRriYIHPDSPATGDHWMSQPISFSKVKLTNNT-LDPQGNIVLTSMHKYQPrIHIVRCSDTLALPWAPTASFTFPETE 158

                         170       180
                  ....*....|....*....|....*...
gi 2158410879 263 FMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20681   159 FIAVTAYQNERITKLKIDNNPFAKGFRE 186
T-box_Fungi_incertae_sedis cd20683
T-box DNA-binding domain; uncharacterized subfamily of fungi classified as Fungi incertae ...
 110-291 2.67e-39

T-box DNA-binding domain; uncharacterized subfamily of fungi classified as Fungi incertae sedis; Fungi incertae sedis refers to a fungal taxonomic group where its broader relationships are unknown or undefined. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.


Pssm-ID: 410334  Cd Length: 214  Bit Score: 143.30  E-value: 2.67e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 110 VTLNNAGLWKKFNSPM-EMILTKkIGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKW---DDYARGDPIT 185
Cdd:cd20683     3 LLLEDADLWAQFHSVQnEMIITK-SGRCLFPLLRFRAVNLDPKALYSIALDIEQVSPNRFRFRNGRWnpiDKDQRGDDAF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 186 SI----------QKIKHKSGGQTGMFWMDGPISFEQIRLTN----------------NPETEK-KDHICLQSMHKWRPVV 238
Cdd:cd20683    82 SSgtadksvllpESYIHPDGPQTGAFWMANGISFAKIKLSNrqpnssdrdgpkenitNSISALpDGHFFLTSFHKYQPRL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2158410879 239 TIRKLENGDENSDFDEEFRIENVWFMAVTMYQNQAVKNLKVENNKFASGFRET 291
Cdd:cd20683   162 HLIQHSAGDHDDILSTTFTFEETEFIAVTHYQNEKVNILKKDYNPHAKGFKDD 214
T-box_TBX21 cd20203
DNA-binding domain of T-box transcription factor 21 and related T-box proteins; TBX21 (also ...
 108-290 2.05e-36

DNA-binding domain of T-box transcription factor 21 and related T-box proteins; TBX21 (also known as T-cell-specific T-box transcription factor T-bet or transcription factor TBLYM) is a lineage-defining transcription factor which directs T helper type 1 (Th1) cell differentiation. It initiates Th1 lineage development from naive T helper precursor cells both by initiating the Th1 genetic programs and by inhibiting the opposing Th2 and Th17 lineage-commitment programs. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410329  Cd Length: 191  Bit Score: 134.70  E-value: 2.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20203     2 LQVLLNNHPLWSKFHKhQTEMIITKQ-GRRMFPFLSFNLTGLDPTAHYNVYVDVVLADQHHWRYQGGKWVQCGKAEGNMP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKI-KHKSGGQTGMFWMDGPISFEQIRLTNN--PETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFD----EEFRIE 259
Cdd:cd20203    81 GNRLyVHPDSPNTGAHWMRQEVSFGKLKLTNNkgASNNVTQMIVLQSLHKYQPRLHIVEVKEGETEEAYSssktHTFTFP 160

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2158410879 260 NVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20203   161 ETQFIAVTAYQNAEITQLKIDHNPFAKGFRD 191
T-box_TBX6_VegT-like cd20190
DNA-binding domain of T-box transcription factor 6, VegT and related T-box proteins; This ...
 108-290 2.53e-36

DNA-binding domain of T-box transcription factor 6, VegT and related T-box proteins; This subfamily includes the transcriptional regulators TBX6 and VegT. TBX6 plays an essential role in the fate determination of axial stem to become either neural or mesodermal. It also plays an essential role in the regulation of left/right patterning in mouse embryos through effects on nodal cilia and perinodal signaling. VegT (also known as Antipodean, Brat and Xombi) is required in early Xenopus embryos for the formation of both the mesoderm and endoderm germ layers. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved 1DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410316  Cd Length: 183  Bit Score: 134.24  E-value: 2.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNSP-MEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20190     1 VSLSLEDRELWKEFSSVgTEMIITKS-GRRMFPACKVSVTGLDPEAKYLFLLDVVPVDNARYKWNKRRWEPSGKAEPHLP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTI-RKLENGDENSDFDEEFRIENVWFMA 265
Cdd:cd20190    80 DRVYIHPDSPAPGAHWMRQPISFHKLKLTNN-TLDPHGHLILHSMHKYQPRIHLvQSADLCSQHWGGMASFRFPETTFIA 158

                         170       180
                  ....*....|....*....|....*
gi 2158410879 266 VTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20190   159 VTAYQNPQITKLKIAANPFAKGFRE 183
T-box_TBX6 cd20196
DNA-binding domain of T-box transcription factor 6, and related T-box proteins; TBX6 is a ...
 108-290 5.64e-36

DNA-binding domain of T-box transcription factor 6, and related T-box proteins; TBX6 is a T-box transcription factor which plays an essential role in the fate determination of axial stem to become either neural or mesodermal. It also plays an essential role in the regulation of left/right patterning in mouse embryos, through effects on nodal cilia and perinodal signaling. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410322  Cd Length: 182  Bit Score: 133.07  E-value: 5.64e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20196     1 VRMSLENAELWKQFSSvGTEMIITKA-GRRMFPQLRVSVSGLDPEARYLLLLDVVPVDGSRYRWQGNSWEASGKAEPRLP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFDEEFRIENVWFMAV 266
Cdd:cd20196    80 DRVYIHPDSPATGAHWMRQPISFHRAKLTNN-TLDPHGHIILHSMHRYQPRVHVVRARDVLSWGGGCASFTFPETQFITV 158

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20196   159 TAYQNPKITQLKINSNPFAKGFRE 182
T-box_VegT-like cd20197
DNA-binding domain of Xenopus VegT and related T-box proteins; VegT, (also known as Antipodean, ...
 108-290 4.66e-35

DNA-binding domain of Xenopus VegT and related T-box proteins; VegT, (also known as Antipodean, Brat and Xombi), is a T-box transcription factor required in early Xenopus embryos for the formation of both, the mesoderm and endoderm germ layers. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410323  Cd Length: 183  Bit Score: 130.73  E-value: 4.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20197     1 VRASLEDQDLWKKFHQiGTEMIITKS-GRRMFPQCKIRVSGLLPYAKYVMLVDFVPVDNFRYKWNKDQWEVAGKAEPQPP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRP---VVTIRKLENgdENSDFDEEFRIENVWF 263
Cdd:cd20197    80 CRTYVHPDSPAPGSHWMKQPISFQKLKLTNN-TLDQHGHIILHSMHRYQPrfhIVQADDLFN--VRWSLFQVFSFPETVF 156

                         170       180
                  ....*....|....*....|....*..
gi 2158410879 264 MAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20197   157 TAVTAYQNEKITKLKIDNNPFAKGFRE 183
T-box_TBR1_2_21-like cd20194
DNA-binding domain of T-box brain protein 1 and 2, T-box transcription factor 21 and related ...
 110-290 1.17e-34

DNA-binding domain of T-box brain protein 1 and 2, T-box transcription factor 21 and related T-box proteins; TBX21 (also known as T-cell-specific T-box transcription factor T-bet or transcription factor TBLYM) is a lineage-defining transcription factor which directs T helper type 1 (Th1) cell differentiation. This subfamily includes TBR1 (also known as T-brain-1, or TES-56), which is a neuron-specific transcription factor involved in forebrain development, and TBR2 (also known as Eomesodermin, Eomes, or T-brain-2), which is associated with neurogenesis, cardiogenesis and tumor immune response. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410320  Cd Length: 185  Bit Score: 129.52  E-value: 1.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 110 VTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITSIQ 188
Cdd:cd20194     4 VYLCNRDLWLKFHQhQTEMIITKQ-GRRMFPTLSFNLSGLDPTAHYNVFVDMVLADPNHWKFQSGKWVPCGKAEGLPQGN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 189 KI-KHKSGGQTGMFWMDGPISFEQIRLTNNPETEKKdHICLQSMHKWRPVVTIRKLENGDENSDFD-EEFRIENVWFMAV 266
Cdd:cd20194    83 RVyVHPDSPNTGAHWMKQEISFSKLKLTNNKGADQG-MIVLNSMHKYQPRIHVIEVGGNGPNEQRNlQTHSFPETQFIAV 161

                         170       180
                  ....*....|....*....|....
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20194   162 TAYQNTDITQLKIDHNPFAKGFRD 185
T-box_TBX1_10-like cd20187
DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors; ...
 107-290 7.16e-34

DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors; This subfamily includes TBX1 and TBX10. TBX1 is a T-box transcription factor which plays an important role in heart development and has been implicated in DiGeorge or 22q11.2 deletion syndrome. This syndrome is associated with various types of cardiac outflow tract (OFT) and vascular defects. Wnt5a is regulated by TBX1 in the second heart field (SHF). TBX1 is required to maintain the integrity of extracellular matrix-cell interactions in the SHF and this interaction is critical for cardiac (OFT) development. TBX10 is a putative T-box transcription factor. Diseases associated with TBX10 include Isolated Cleft Lip and Cleft Lip/cleft lip with or without cleft palate. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410313  Cd Length: 189  Bit Score: 127.54  E-value: 7.16e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 107 GIEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYR--FTDNKWDDYARGDP 183
Cdd:cd20187     1 NVTVQLEMKALWDEFNQlGTEMIVTKA-GRRMFPTFQVKIFGMDPMADYMLMMDFVPVDDKRYRyaFHSSSWLVAGKADP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 184 ITSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPeTEKKDHICLQSMHKWRPVVTIRKLENGDENSDFDEE----FRIE 259
Cdd:cd20187    80 AMPGRIHVHPDSPAKGAQWMKQIVSFDKLKLTNNL-LDDNGHIILNSMHRYQPRFHVVYVDPRKDSENSAEEnfktFIFP 158

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2158410879 260 NVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20187   159 ETKFTAVTAYQNHRITQLKIASNPFAKGFRD 189
T-box_TBX20-like cd20193
DNA-binding domain of T-box transcription factor 20 and related T-box proteins; TBX20 is a ...
 108-291 7.64e-34

DNA-binding domain of T-box transcription factor 20 and related T-box proteins; TBX20 is a T-box transcriptional factor which functions in embryonic development and its deficiency is associated with congenital heart disease. It acts both as a transcriptional activator and a repressor required for cardiac development, and has key roles in maintaining the functional and structural phenotypes in the adult heart. The TBX20-cardiac transcription factor CASZ1 protein complex is protective against dilated cardiomyopathy and is essential for maintaining cardiac homeostasis. TBX20 has also been shown to regulate angiogenesis through the PROK2-PROKR1 (prokineticin receptor 1) pathway and is involved in both, pathological and developmental, angiogenesis. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410319  Cd Length: 190  Bit Score: 127.55  E-value: 7.64e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNK--WDDYARGDPI 184
Cdd:cd20193     1 VQCHLETKELWDKFHElGTEMIITKS-GRRMFPTVRVSFSGVDPDAKYIVLMDIVPVDNKRYRYAYHRssWLVAGKADPP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 185 TSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKLENGD-ENSDFD-EEFRI---- 258
Cdd:cd20193    80 LPARLYVHPDSPFTGEQLLKQMVSFEKVKLTNN-ELDKHGHIILNSMHKYQPRVHIVKKKDHTaSLVNLKsEEFRTfifp 158

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2158410879 259 ENVwFMAVTMYQNQAVKNLKVENNKFASGFRET 291
Cdd:cd20193   159 ETV-FTAVTAYQNQLITKLKIDSNPFAKGFRDS 190
T-box_TBX2_3-like cd20188
DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins; This ...
 108-290 2.62e-32

DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins; This subfamily includes the T-box transcription factors TBX2 and TBX3 and similar proteins. TBX2 is an oncogenic transcription factor implicated in developmental processes, including coordinating cell fate, patterning and morphogenesis of a wide range of tissues and organs. It is overexpressed in several cancers, including melanoma and breast, and plays a key role during cardiac development. TBX2 is a negative regulator of promyelocytic leukemia protein (PML) function in cellular senescence, and it interacts with HP1 to recruit a repression complex to EGR1-responsive promoters to drive the proliferation of breast cancer cells. TBX3 has also been implicated in oncogenesis in breast cancer and melanoma. The tbx3 gene is downregulated by PML. TBX3 directly represses TBX2 under the control of the PRC2 complex in skeletal muscle and rhabdomyosarcoma. Also included in this family is the Drosophila melanogaster optomotor-blind protein (Omb, also known as lethal(1)optomotor-blind, or L(1)omb, or protein bifid) which controls many developmental processes such as wing, eye, and abdominal tergites and optic lobes, and induces epithelial cell migration and extrusion in vivo. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410314  Cd Length: 185  Bit Score: 122.92  E-value: 2.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKF-NSPMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20188     3 PKVELEAKDLWDQFhKLGTEMVITKS-GRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNNPeTEKKDHICLQSMHKWRPVVTIRKLenGDENSDFDEEFR---IENVWF 263
Cdd:cd20188    82 KRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNI-SDKHGFTILNSMHKYQPRFHIVRA--NDILKLPYSTFRtyvFKETEF 158

                         170       180
                  ....*....|....*....|....*..
gi 2158410879 264 MAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20188   159 IAVTAYQNEKITQLKIDNNPFAKGFRD 185
T-box_TBX18_like cd20199
DNA-binding domain of T-box transcription factor 18 and related T-box proteins; TBX18 acts as ...
 108-290 1.51e-31

DNA-binding domain of T-box transcription factor 18 and related T-box proteins; TBX18 acts as a transcription repressor involved in the developmental processes of a variety of tissues and organs, including the ureter, vertebral column. epicardium and coronary vessels. TBX18 is important for the development of the head portion of the sino atrial node (SAN); SAN is the pacemaker region of the heart that initiates each heartbeat. This subgroup belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410325  Cd Length: 195  Bit Score: 121.31  E-value: 1.51e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFT--DNKWDDYARGDPI 184
Cdd:cd20199     4 VRVDLQGADLWKRFHEiGTEMIITKA-GRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVyhSSKWMVAGNADSP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 185 TSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKLENGDENS--------DFDEEF 256
Cdd:cd20199    83 VPPRVYIHPDSPASGETWMRQVISFDKLKLTNN-ELDDQGHIILHSMHKYQPRVHVIRKECGEELSpvkpipsgEGVKAF 161

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2158410879 257 RIENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20199   162 SFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 195
T-box_TBX15_18_22-like cd20191
DNA-binding domain of T-box transcription factor 15, 18 and 22, and related T-box proteins; ...
 108-290 5.48e-31

DNA-binding domain of T-box transcription factor 15, 18 and 22, and related T-box proteins; This subfamily includes the transcriptional regulators TBX15, TBX18 and TBX22 which are involved in various developmental processes. TBX15 (also known as TBX14) plays an important role in the development of the skeleton of the limb, vertebral column and head, possibly through its control of the number of mesenchymal precursor cells and chondrocytes; it also plays a role in the differentiation of brown and brite adipocytes. TBX18 is involved in the developmental processes of a variety of tissues and organs, including the ureter, vertebral column. epicardium and coronary vessels; it is important for the development of the head portion of the sino atrial node (SAN). Mutations in the T-box transcription factor gene TBX22 are found in X-linked Cleft Palate with or without Ankyloglossia syndrome (CPX syndrome), and associated with cleft lip and palate, and tooth agenesis. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410317  Cd Length: 194  Bit Score: 119.61  E-value: 5.48e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFT--DNKWDDYARGDPI 184
Cdd:cd20191     3 IQVELQGSELWKRFHDiGTEMIITKA-GRRMFPAIRVKVSGLDPHAQYIVAMDIVPVDNKRYRYVyhSSKWMVAGNADAP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 185 TSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKLENGDENSDFD--------EEF 256
Cdd:cd20191    82 VPPRVYIHPDSPASGETWMRQVVSFDKLKLTNN-EMDDQGHIILHSMHKYQPRVHVIRKDSSTDLSPKKpvppgegvKTF 160

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2158410879 257 RIENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20191   161 SFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 194
T-box_TBR1 cd20204
DNA-binding domain of T-box brain protein 1 and related T-box proteins; TBR1 (also known as ...
 109-290 5.62e-31

DNA-binding domain of T-box brain protein 1 and related T-box proteins; TBR1 (also known as T-brain-1 or TES-56) is a neuron-specific transcription factor of the T-box family and involved in forebrain development. It has been recognized as a high-confidence risk gene for autism spectrum disorders (ASD); it regulates the expression of ASD-related genes that are critical for cortical development. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410330  Cd Length: 191  Bit Score: 119.45  E-value: 5.62e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 109 EVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDpiTSI 187
Cdd:cd20204     3 QVYLCNRPLWLKFHRhQTEMIITKQ-GRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKAD--TNV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 188 QKIK---HKSGGQTGMFWMDGPISFEQIRLTNNPETEKKD--HICLQSMHKWRPVVTIRKL-ENGDENSDFD---EEFRI 258
Cdd:cd20204    80 QGNRvymHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNgqMVVLQSLHKYQPRLHVVEVnEDGTEDTSQPgrvQTFTF 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2158410879 259 ENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20204   160 PETQFIAVTAYQNTDITQLKIDHNPFAKGFRD 191
T-box_TBX22-like cd20200
DNA-binding domain of T-box transcription factor 22 and related T-box proteins; TBX22 is a ...
 108-290 6.41e-31

DNA-binding domain of T-box transcription factor 22 and related T-box proteins; TBX22 is a transcriptional regulator involved in developmental processes. Mutations in the T-Box transcription factor gene TBX22 are found in X-linked Cleft Palate with or without Ankyloglossia syndrome (CPX syndrome). TBX22 mutation is also associated with cleft lip and palate, and tooth agenesis. This subgroup belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410326  Cd Length: 194  Bit Score: 119.64  E-value: 6.41e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKkIGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFT--DNKWDDYARGDPI 184
Cdd:cd20200     3 VQVELQGSELWKRFHEiGTEMIITK-AGRRMFPSVRVKVKGLDPLKQYYIAMDVVPVDSKRYRYVyhSSQWMVAGNTDHS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 185 TSIQKIK-HKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVVTIRKlengdENSDFD---------- 253
Cdd:cd20200    82 CITPRLYvHPDSPCSGETWMRQIISFDRVKLTNN-EMDDKGHIILQSMHKYKPRVHVIL-----QDSRFDlsqiqslpae 155

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2158410879 254 --EEFRIENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20200   156 gvKTFSFPETEFTTVTAYQNQQITKLKIDRNPFAKGFRD 194
T-box_TBR2 cd20205
DNA-binding domain of T-box brain protein 2 and related T-box proteins; TBR2 (also known as ...
 109-290 7.99e-31

DNA-binding domain of T-box brain protein 2 and related T-box proteins; TBR2 (also known as Eomesodermin, Eomes, or T-brain-2) is a member of the T-box family of transcription factors and is associated with neurogenesis, cardiogenesis and tumor immune response. This subfamily belongs to the T-box family of transcription factors which plays a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410331  Cd Length: 191  Bit Score: 119.01  E-value: 7.99e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 109 EVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITSI 187
Cdd:cd20205     3 QVYLCNRPLWLKFHRhQTEMIITKQ-GRRMFPFLSFNITGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 188 QKIK-HKSGGQTGMFWMDGPISFEQIRLTNN--PETEKKDHICLQSMHKWRPVVTIRKL-ENGDENSDFD---EEFRIEN 260
Cdd:cd20205    82 NKVYvHPESPNTGAHWMRQEISFGKLKLTNNkgANNNNTQMIVLQSLHKYQPRLHIVEVsEDGVEDLNDSsktQTFTFPE 161

                         170       180       190
                  ....*....|....*....|....*....|
gi 2158410879 261 VWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20205   162 NQFIAVTAYQNTDITQLKIDHNPFAKGFRD 191
T-box_TBX19-like cd20201
DNA-binding domain of T-box transcription factor 19 and related T-box proteins; Tbx19 (also ...
 108-288 7.23e-30

DNA-binding domain of T-box transcription factor 19 and related T-box proteins; Tbx19 (also known as Tpit) is a T-box factor restricted to two pituitary (pro-opiomelanocortin) POMC-expressing lineages, the corticotrophs and melanotrophs; it controls terminal differentiation of these lineages. TBX19 activates POMC gene transcription with the cooperation of another transcription factor Pitx1. Mutations of the human TPIT gene cause early onset pituitary adrenocorticotrophic hormone (ACTH) deficiency. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410327  Cd Length: 183  Bit Score: 116.28  E-value: 7.23e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNSPM-EMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20201     6 LQVSLEDAELWQRFKEVTnEMIVTKN-GRRMFPVLKISVSGLDPNAMYSFLLDFAPADGHRWKYVNGEWVPAGKPEPHSH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNnpETEKKDHICLQSMHKWRPVVTIRKLENGDE---NSDFDEefrienVWF 263
Cdd:cd20201    85 SCVYIHPDSPNFGAHWMKAPISFSKVKLTN--KLNGGGQIMLNSLHKYEPQIHIVRVGGPHRmvtNCSFPE------TQF 156

                         170       180
                  ....*....|....*....|....*
gi 2158410879 264 MAVTMYQNQAVKNLKVENNKFASGF 288
Cdd:cd20201   157 IAVTAYQNEEITALKIKYNPFAKAF 181
T-box_TBX15-like cd20198
DNA-binding domain of T-box transcription factor 15 and related T-box proteins; TBX15 (also ...
 102-290 1.76e-29

DNA-binding domain of T-box transcription factor 15 and related T-box proteins; TBX15 (also known as TBX14) plays an important role in the development of the skeleton of the limb, vertebral column and head, possibly through its control of the number of mesenchymal precursor cells and chondrocytes. TBX15 also plays a role in the differentiation of brown and brite adipocytes. This subgroup belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is Brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410324  Cd Length: 198  Bit Score: 115.59  E-value: 1.76e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 102 MISSSGIEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFT--DNKWDDY 178
Cdd:cd20198     1 TSSMEEIQVELQCADLWKRFHDiGTEMIITKA-GRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVyhSSKWMVA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 179 ARGDPITSIQKIKHKSGGQTGMFWMDGPISFEQIRLTNNpETEKKDHICLQSMHKWRPVV-TIRKLENGDEN-------S 250
Cdd:cd20198    80 GNADSPVPPRVYIHPDSLASGDTWMRQVVSFDKLKLTNN-ELDDQGHIILHSMHKYQPRVhVIRKDFSSDLSptkpvptG 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2158410879 251 DFDEEFRIENVWFMAVTMYQNQAVKNLKVENNKFASGFRE 290
Cdd:cd20198   159 DGVKTFSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRD 198
T-box_TBXT cd20202
DNA-binding domain of T-box transcription factor T and related T-box proteins; TBXT, also ...
 108-288 2.33e-29

DNA-binding domain of T-box transcription factor T and related T-box proteins; TBXT, also known as Brachyury protein, or protein T, is a transcription factor needed for posterior mesoderm formation and differentiation as well as for the notochord development during embryogenesis. It binds to a 24 base-pair (bp) palindromic site (called the T site) and activates gene transcription when bound to such a site. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. TBXT is the founding member of the T-box family, members of which share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.


Pssm-ID: 410328  Cd Length: 179  Bit Score: 114.75  E-value: 2.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 108 IEVTLNNAGLWKKFNS-PMEMILTKKiGRKMFPNLEYSVDGLNPTAMYEIYLHMERMDEHKYRFTDNKWDDYARGDPITS 186
Cdd:cd20202     2 LKVSLEESELWLRFKElTNEMIVTKN-GRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 187 IQKIKHKSGGQTGMFWMDGPISFEQIRLTNnpETEKKDHICLQSMHKWRPVVTIRKLeNGDENSDFDEEFriENVWFMAV 266
Cdd:cd20202    81 SCVYIHPDSPNFGAHWMKAPVSFSKVKLTN--KLNGGGQIMLNSLHKYEPRIHIVRV-GGPQRMITSHSF--PETQFIAV 155

                         170       180
                  ....*....|....*....|..
gi 2158410879 267 TMYQNQAVKNLKVENNKFASGF 288
Cdd:cd20202   156 TAYQNEEITALKIKYNPFAKAF 177
7TM_GPCR_Srh pfam10318
Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis ...
 473-614 6.56e-13

Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402095  Cd Length: 302  Bit Score: 69.88  E-value: 6.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158410879 473 FVKMNYPNYYTEFSQLFNFAIYEFNFIFKLIAVGCFFAVTLF-SLFFSFLIIdiFTLLSGVKKKISAKNFQRHQAAVISL 551
Cdd:pfam10318 158 KVLKKLPCLPPEFFDNPPVFVLAIDSTYFLICIVLLILILIIqILFFVFLTI--YYLFKSVKSSLSKKTRKLQKKFFIAL 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158410879 552 IAQLATSSMCLLPPVGLVIAIISHYEHSQAVVRLLLAIFALHSTVNAIILIISTPTYRGYIKR 614
Cdd:pfam10318 236 IIQVSIPLIVILIPLIYILFSIIFGYYNQALNNLLFIIISLHGLLSTIAMLLVHKPYRKFVLS 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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