NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|566209164|ref|XP_002322795|]
View 

NDR1/HIN1-like protein 10 [Populus trichocarpa]

Protein Classification

LEA type 2 family protein( domain architecture ID 10504605)

late embryogenesis abundant (LEA) type 2 family protein plays a role in tolerance to drought and other abiotic stresses in plants

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 96-199 4.77e-13

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


:

Pssm-ID: 427176  Cd Length: 99  Bit Score: 62.72  E-value: 4.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566209164   96 NVSIRNPNKkIGIYYNRVEAKAFYEGQRFGYS-SLTPFYQGHKNTTVLNVvftgtqPVTLQGEDL-KQFNSEKTSGLYSI 173
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLASGgSPQPGTIPAGGTTTLEV------PVSVSYDDLvRLLRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....*.
gi 566209164  174 ALELSLRVKFKLGKVKTARFKPKVEC 199
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSVSG 99
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 96-199 4.77e-13

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 62.72  E-value: 4.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566209164   96 NVSIRNPNKkIGIYYNRVEAKAFYEGQRFGYS-SLTPFYQGHKNTTVLNVvftgtqPVTLQGEDL-KQFNSEKTSGLYSI 173
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLASGgSPQPGTIPAGGTTTLEV------PVSVSYDDLvRLLRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....*.
gi 566209164  174 ALELSLRVKFKLGKVKTARFKPKVEC 199
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSVSG 99
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 96-199 4.77e-13

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 62.72  E-value: 4.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566209164   96 NVSIRNPNKkIGIYYNRVEAKAFYEGQRFGYS-SLTPFYQGHKNTTVLNVvftgtqPVTLQGEDL-KQFNSEKTSGLYSI 173
Cdd:pfam03168   1 TLRVRNPNS-FGLPYDGLDYDLSYNGQPLASGgSPQPGTIPAGGTTTLEV------PVSVSYDDLvRLLRDLISVVGLEL 73

                          90       100
                  ....*....|....*....|....*.
gi 566209164  174 ALELSLRVKFKLGKVKTARFKPKVEC 199
Cdd:pfam03168  74 PYTLRGRLKVGGPFFGSRTVPLSVSG 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH