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Conserved domains on  [gi|225455477|ref|XP_002280097|]
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dehydration-responsive element-binding protein 1B [Vitis vinifera]

Protein Classification

AP2/ERF family transcription factor( domain architecture ID 10030729)

AP2/ERF family transcription factor binds to the GCC-box pathogenesis-related promoter element; similar to Oryza sativa dehydration-responsive element-binding proteins, which are transcriptional activators that bind specifically to the DNA sequence 5'-[AG]CCGAC-3'

CATH:  3.30.730.10
Gene Ontology:  GO:0003700|GO:0006355|GO:0003677
PubMed:  15708341
SCOP:  4000937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 57-115 2.81e-30

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


:

Pssm-ID: 237985  Cd Length: 61  Bit Score: 106.20  E-value: 2.81e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 225455477  57 YRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNFADS 115
Cdd:cd00018    3 YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61
 
Name Accession Description Interval E-value
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 57-115 2.81e-30

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 106.20  E-value: 2.81e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 225455477  57 YRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNFADS 115
Cdd:cd00018    3 YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
57-112 5.75e-28

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 100.42  E-value: 5.75e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 225455477    57 YRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNF 112
Cdd:smart00380   2 YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 56-105 8.06e-11

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 55.33  E-value: 8.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 225455477   56 VYRGVRRR-NSGKWVCEVREPNK--TSRIWLGTFPTaEMAARAHDVAALALRG 105
Cdd:pfam00847   1 KIRGVRYDkKWGRWVAEWSENGKrrKKRFSLGKYGT-EEAKRAAIEARKKLEG 52
 
Name Accession Description Interval E-value
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 57-115 2.81e-30

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 106.20  E-value: 2.81e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 225455477  57 YRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNFADS 115
Cdd:cd00018    3 YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
57-112 5.75e-28

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 100.42  E-value: 5.75e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 225455477    57 YRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNF 112
Cdd:smart00380   2 YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 56-105 8.06e-11

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 55.33  E-value: 8.06e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 225455477   56 VYRGVRRR-NSGKWVCEVREPNK--TSRIWLGTFPTaEMAARAHDVAALALRG 105
Cdd:pfam00847   1 KIRGVRYDkKWGRWVAEWSENGKrrKKRFSLGKYGT-EEAKRAAIEARKKLEG 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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