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Conserved domains on  [gi|359481801|ref|XP_002278802|]
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DNAJ protein JJJ1 homolog [Vitis vinifera]

Protein Classification

DnaJ and zf-C2H2_jaz domain-containing protein( domain architecture ID 13623359)

protein containing domains DnaJ, ZUO1, and zf-C2H2_jaz

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 7-73 9.08e-22

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 88.68  E-value: 9.08e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 359481801    7 CLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDK----NPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
ZUO1 super family cl34965
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 8-261 2.03e-15

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5269:

Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 78.15  E-value: 2.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   8 LYEVLGLT---TDATADEIRSAYKKLALQRHPDKLVHSGLSKADATaqFQELLNAYEVLSNPEERAWYDShrsqilfsnp 84
Cdd:COG5269   45 LYALLGLSkyrTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF--FKLIQKAREVLGDRKLRLQYDS---------- 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801  85 tssngsvpnlfSFFSNSVYSGYDDTRKGFYKVYSEVFDKiyatEVNFAKKlglgsiKEAPMMGNLESPYSQVTAFYGYWI 164
Cdd:COG5269  113 -----------NDFDADVPPPRIYTPDEFFEVWEPVFER----EARFSKK------QPVPSLGPSDSSLKEVEEFYEFWS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801 165 GFSTVMDFAWVDEYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVidmqvkkSLEEEKRKEEEK 244
Cdd:COG5269  172 NFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-------KSFKEQEKEMKK 244

                        250
                 ....*....|....*..
gi 359481801 245 TRKWEEFERGRLERARA 261
Cdd:COG5269  245 IRKWEREAGARLKALAA 261
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 294-320 8.90e-12

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


:

Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 59.49  E-value: 8.90e-12
                          10        20
                  ....*....|....*....|....*..
gi 359481801  294 EFYCVLCRKKFKSEKQWKNHEKSKKHK 320
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 7-73 9.08e-22

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 88.68  E-value: 9.08e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 359481801    7 CLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDK----NPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
9-88 1.80e-20

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 86.31  E-value: 1.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhSGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQIL---FSNPT 85
Cdd:COG2214    8 YAVLGVPPDASLEEIRQAYRRLAKLLHPDR---GGELKALAEELFQRLNEAYEVLSDPERRAEYDRELGQSGkgsASQPS 84


                 ...
gi 359481801  86 SSN 88
Cdd:COG2214   85 AAA 87
DnaJ smart00271
DnaJ molecular chaperone homology domain;
6-67 1.07e-17

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 77.27  E-value: 1.07e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 359481801     6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhSGLSKADATAQFQELLNAYEVLSNPE 67
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDK---NPGDKEEAEEKFKEINEAYEVLSDPE 59
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 6-73 6.40e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 82.88  E-value: 6.40e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvHSGlsKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR--NPG--DKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 7-65 3.73e-16

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 72.58  E-value: 3.73e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 359481801   7 CLYEVLGLTTDATADEIRSAYKKLALQRHPDKLVHsglsKADATAQFQELLNAYEVLSN 65
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD----DPEAEEKFKEINEAYEVLSD 55
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 8-261 2.03e-15

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 78.15  E-value: 2.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   8 LYEVLGLT---TDATADEIRSAYKKLALQRHPDKLVHSGLSKADATaqFQELLNAYEVLSNPEERAWYDShrsqilfsnp 84
Cdd:COG5269   45 LYALLGLSkyrTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF--FKLIQKAREVLGDRKLRLQYDS---------- 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801  85 tssngsvpnlfSFFSNSVYSGYDDTRKGFYKVYSEVFDKiyatEVNFAKKlglgsiKEAPMMGNLESPYSQVTAFYGYWI 164
Cdd:COG5269  113 -----------NDFDADVPPPRIYTPDEFFEVWEPVFER----EARFSKK------QPVPSLGPSDSSLKEVEEFYEFWS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801 165 GFSTVMDFAWVDEYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVidmqvkkSLEEEKRKEEEK 244
Cdd:COG5269  172 NFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-------KSFKEQEKEMKK 244

                        250
                 ....*....|....*..
gi 359481801 245 TRKWEEFERGRLERARA 261
Cdd:COG5269  245 IRKWEREAGARLKALAA 261
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
2-75 3.83e-15

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 77.94  E-value: 3.83e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359481801   2 ASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsglSKA-DATAQFQELLNAYEVLSNPEERAWYDSH 75
Cdd:NF037946   1 MEEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDR------NKApDAAEIFAEINEAYEVLSNPEKRANYDKY 69
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 294-320 8.90e-12

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 59.49  E-value: 8.90e-12
                          10        20
                  ....*....|....*....|....*..
gi 359481801  294 EFYCVLCRKKFKSEKQWKNHEKSKKHK 320
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 295-326 7.56e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 45.71  E-value: 7.56e-07
                           10        20        30
                   ....*....|....*....|....*....|..
gi 359481801   295 FYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEF 326
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
UFD2 COG5112
U1-like Zn-finger-containing protein [General function prediction only];
294-328 7.74e-03

U1-like Zn-finger-containing protein [General function prediction only];


Pssm-ID: 227443  Cd Length: 126  Bit Score: 36.98  E-value: 7.74e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 359481801 294 EFYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEFRE 328
Cdd:COG5112   55 QHYCIECARYFITEKALMEHKKGKVHKRRAKELRE 89
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 7-73 9.08e-22

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 88.68  E-value: 9.08e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 359481801    7 CLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDK----NPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
9-88 1.80e-20

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 86.31  E-value: 1.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhSGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQIL---FSNPT 85
Cdd:COG2214    8 YAVLGVPPDASLEEIRQAYRRLAKLLHPDR---GGELKALAEELFQRLNEAYEVLSDPERRAEYDRELGQSGkgsASQPS 84


                 ...
gi 359481801  86 SSN 88
Cdd:COG2214   85 AAA 87
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 9-92 1.70e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 85.14  E-value: 1.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPTSSN 88
Cdd:COG0484    3 YEILGVSRDASAEEIKKAYRKLAKKYHPDR----NPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATELA 78


                 ....
gi 359481801  89 GSVP 92
Cdd:COG0484   79 ESAA 82
DnaJ smart00271
DnaJ molecular chaperone homology domain;
6-67 1.07e-17

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 77.27  E-value: 1.07e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 359481801     6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhSGLSKADATAQFQELLNAYEVLSNPE 67
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDK---NPGDKEEAEEKFKEINEAYEVLSDPE 59
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 6-73 6.40e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 82.88  E-value: 6.40e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvHSGlsKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK10767   4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR--NPG--DKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 7-65 3.73e-16

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 72.58  E-value: 3.73e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 359481801   7 CLYEVLGLTTDATADEIRSAYKKLALQRHPDKLVHsglsKADATAQFQELLNAYEVLSN 65
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD----DPEAEEKFKEINEAYEVLSD 55
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 8-261 2.03e-15

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 78.15  E-value: 2.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   8 LYEVLGLT---TDATADEIRSAYKKLALQRHPDKLVHSGLSKADATaqFQELLNAYEVLSNPEERAWYDShrsqilfsnp 84
Cdd:COG5269   45 LYALLGLSkyrTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF--FKLIQKAREVLGDRKLRLQYDS---------- 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801  85 tssngsvpnlfSFFSNSVYSGYDDTRKGFYKVYSEVFDKiyatEVNFAKKlglgsiKEAPMMGNLESPYSQVTAFYGYWI 164
Cdd:COG5269  113 -----------NDFDADVPPPRIYTPDEFFEVWEPVFER----EARFSKK------QPVPSLGPSDSSLKEVEEFYEFWS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801 165 GFSTVMDFAWVDEYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVidmqvkkSLEEEKRKEEEK 244
Cdd:COG5269  172 NFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-------KSFKEQEKEMKK 244

                        250
                 ....*....|....*..
gi 359481801 245 TRKWEEFERGRLERARA 261
Cdd:COG5269  245 IRKWEREAGARLKALAA 261
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 1-73 3.45e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 77.58  E-value: 3.45e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 359481801   1 MASEgRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsgLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14298   1 MATT-RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK-----NKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 6-100 3.76e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 77.47  E-value: 3.76e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPT 85
Cdd:PRK14301   4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR----NPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGG 79

                         90
                 ....*....|....*.
gi 359481801  86 SSN-GSVPNLFSFFSN 100
Cdd:PRK14301  80 FGGfSSAEDIFSHFSD 95
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
2-75 3.83e-15

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 77.94  E-value: 3.83e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359481801   2 ASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsglSKA-DATAQFQELLNAYEVLSNPEERAWYDSH 75
Cdd:NF037946   1 MEEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDR------NKApDAAEIFAEINEAYEVLSNPEKRANYDKY 69
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 3-121 4.35e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 77.11  E-value: 4.35e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   3 SEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILfs 82
Cdd:PRK14294   1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDR----NPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL-- 74

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 359481801  83 nptssNGSvpnlfsffSNSVYSGYDDTRKGFYKVYSEVF 121
Cdd:PRK14294  75 -----SGT--------GFSGFSGFDDIFSSFGDIFEDFF 100
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 9-90 9.71e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 75.98  E-value: 9.71e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvHSGlSKADATAQFQELLNAYEVLSNPEERAWYD--SHRSQILFSNPTS 86
Cdd:PRK14282   7 YEILGVSRNATQEEIKRAYKRLVKEWHPDR--HPE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDrfGYVGEQPPYQETE 83


                 ....
gi 359481801  87 SNGS 90
Cdd:PRK14282  84 SGGG 87
PRK14295 PRK14295
molecular chaperone DnaJ;
9-97 1.91e-14

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 75.27  E-value: 1.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsglSKADATAQ--FQELLNAYEVLSNPEERAWYDSHRSqiLFSNP-- 84
Cdd:PRK14295  12 YKVLGVPKDATEAEIKKAYRKLAREYHPDA------NKGDAKAEerFKEISEAYDVLSDEKKRKEYDEARS--LFGNGgf 83

                         90
                 ....*....|....
gi 359481801  85 -TSSNGSVPNLFSF 97
Cdd:PRK14295  84 rPGPGGGGGGGFNF 97
PRK14289 PRK14289
molecular chaperone DnaJ;
2-73 2.39e-14

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 74.87  E-value: 2.39e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 359481801   2 ASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14289   1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK----NPGDKEAEEKFKEAAEAYDVLSDPDKRSRYD 68
PRK14280 PRK14280
molecular chaperone DnaJ;
6-73 2.49e-14

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 74.76  E-value: 2.49e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSK-ADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14280   4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD------INKeEGADEKFKEISEAYEVLSDDQKRAQYD 66
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 9-121 8.75e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 73.30  E-value: 8.75e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPTSSN 88
Cdd:PRK14281   6 YEVLGVSRSADKDEIKKAYRKLALKYHPDK----NPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 359481801  89 GS--------VPNLFSFFsNSVYSGYDDTRKGFYKVYSEVF 121
Cdd:PRK14281  82 GPgygggggdFNDIFSAF-NDMFGGGARRGGGSPFGFEDVF 121
PRK14293 PRK14293
molecular chaperone DnaJ;
9-73 2.81e-13

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 71.56  E-value: 2.81e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSK-ADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14293   6 YEILGVSRDADKDELKRAYRRLARKYHPD------VNKePGAEDRFKEINRAYEVLSDPETRARYD 65
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 8-100 4.13e-13

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 71.39  E-value: 4.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   8 LYEVLGLTTDATADEIRSAYKKLALQRHPDklvhsglsKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPTSS 87
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPD--------KGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101

                         90
                 ....*....|...
gi 359481801  88 NGSvpNLFSFFSN 100
Cdd:PTZ00037 102 DAS--DLFDLIFG 112
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 9-73 1.19e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 69.53  E-value: 1.19e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGlskadATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14292   5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-----AAEKFAQINEAYAVLSDAEKRAHYD 64
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 6-121 1.36e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 69.63  E-value: 1.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsglSKADATAQ--FQELLNAYEVLSNPEERAWYDShrsqilFSN 83
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDK------NKGNKESEekFKEATEAYEILRDPKKRQAYDQ------FGK 71

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 359481801  84 PTSSNGSvpnlfSFFSNSVYSGYDDTRKGFYKVYSEVF 121
Cdd:PRK14286  72 AGVNAGA-----GGFGQGAYTDFSDIFGDFGDIFGDFF 104
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 9-89 4.88e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 67.95  E-value: 4.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvHSGlsKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPTSSN 88
Cdd:PRK14284   4 YTILGVSKTASPEEIKKAYRKLAVKYHPDK--NPG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFG 79


                 .
gi 359481801  89 G 89
Cdd:PRK14284  80 G 80
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 8-73 5.12e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 67.81  E-value: 5.12e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 359481801   8 LYEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSKA-DATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14276   6 YYDRLGVSKDASQDEIKKAYRKLSKKYHPD------INKEpGAEEKYKEVQEAYETLSDPQKRAAYD 66
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 8-73 5.45e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 67.90  E-value: 5.45e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 359481801   8 LYEVLGLTTDATADEIRSAYKKLALQRHPDklVHSGlsKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14277   7 YYEILGVDRNATEEEIKKAYRRLAKKYHPD--LNPG--DKEAEQKFKEINEAYEILSDPQKRAQYD 68
PRK14297 PRK14297
molecular chaperone DnaJ;
9-114 7.11e-12

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 67.50  E-value: 7.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDshrsQILFSNPTSSN 88
Cdd:PRK14297   7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDK----NKGNKEAEEKFKEINEAYQVLSDPQKKAQYD----QFGTADFNGAG 78

                         90       100
                 ....*....|....*....|....*.
gi 359481801  89 GSVPNLFSFFSNSVYSGYDDTRKGFY 114
Cdd:PRK14297  79 GFGSGGFGGFDFSDMGGFGDIFDSFF 104
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 1-97 8.41e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 67.00  E-value: 8.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   1 MAsegRCLYEVLGLTTDATADEIRSAYKKLALQRHPDklVHSGlskADATAQFQELLNAYEVLSNPEERAWYDshrsqiL 80
Cdd:PRK14278   1 MA---RDYYGLLGVSRNASDAEIKRAYRKLARELHPD--VNPD---EEAQEKFKEISVAYEVLSDPEKRRIVD------L 66

                         90
                 ....*....|....*..
gi 359481801  81 FSNPTSSNGSVPNLFSF 97
Cdd:PRK14278  67 GGDPLESAGGGGGGFGG 83
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 294-320 8.90e-12

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 59.49  E-value: 8.90e-12
                          10        20
                  ....*....|....*....|....*..
gi 359481801  294 EFYCVLCRKKFKSEKQWKNHEKSKKHK 320
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
9-66 1.12e-11

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 60.58  E-value: 1.12e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKLVhSGLSKAD---ATAQFQELLNAYEVLSNP 66
Cdd:COG1076    7 FELLGLPPDADDAELKRAYRKLQREHHPDRLA-AGLPEEEqrlALQKAAAINEAYETLKDP 66
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 9-78 3.19e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 64.57  E-value: 3.19e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGlskadATAQFQELLNAYEVLSNPEERAWYDSHRSQ 78
Cdd:PRK14299   7 YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG-----AEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 6-121 5.25e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 64.63  E-value: 5.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDShrsqilFSNPT 85
Cdd:PRK14285   3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDK----NKGNKEAESIFKEATEAYEVLIDDNKRAQYDR------FGHTA 72

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 359481801  86 SSNGSVPNLFSffsnSVYSGYDDTRKGFYKVYSEVF 121
Cdd:PRK14285  73 FEGGGGFEGFS----GGFSGFSDIFEDFGDIFDSFF 104
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 9-73 5.80e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 64.41  E-value: 5.80e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSK-ADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14291   6 YEILGVSRNATQEEIKKAYRRLARKYHPD------FNKnPEAEEKFKEINEAYQVLSDPEKRKLYD 65
PRK14279 PRK14279
molecular chaperone DnaJ;
9-77 2.58e-10

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 62.44  E-value: 2.58e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvHSGLSKADatAQFQELLNAYEVLSNPEERAWYDSHRS 77
Cdd:PRK14279  12 YKELGVSSDASAEEIKKAYRKLARELHPDA--NPGDPAAE--ERFKAVSEAHDVLSDPAKRKEYDETRR 76
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 6-73 3.13e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 62.33  E-value: 3.13e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 359481801   6 RCLYEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSKA-DATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14287   4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPD------VNKApDAEDKFKEVKEAYDTLSDPQKKAHYD 66
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 9-73 5.79e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 61.49  E-value: 5.79e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDklVHSGlSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14290   6 YKILGVDRNASQEDIKKAFRELAKKWHPD--LHPG-NKAEAEEKFKEISEAYEVLSDPQKRRQYD 67
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 3-122 7.97e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 60.99  E-value: 7.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   3 SEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsgLSKADATAQFQELLNAYEVLSNPEERAWYDS--HRSQIL 80
Cdd:PRK14283   2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-----SEEEGAEEKFKEISEAYAVLSDDEKRQRYDQfgHAGMDG 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 359481801  81 FSNPtssngsvpnlfSFFSNsvySGYDDTRKGFYKVYSEVFD 122
Cdd:PRK14283  77 FSQE-----------DIFNN---INFEDIFQGFGFGIGNIFD 104
PRK10266 PRK10266
curved DNA-binding protein;
9-90 1.31e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 59.83  E-value: 1.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSK-ADATAQFQELLNAYEVLSNPEERAWYDS---HRSQILFSNP 84
Cdd:PRK10266   7 YAIMGVKPTDDLKTIKTAYRRLARKYHPD------VSKePDAEARFKEVAEAWEVLSDEQRRAEYDQlwqHRNDPQFNRQ 80


                 ....*.
gi 359481801  85 TSSNGS 90
Cdd:PRK10266  81 FQHGDG 86
djlA PRK09430
co-chaperone DjlA;
9-63 3.73e-09

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 57.90  E-value: 3.73e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGLSK---ADATAQFQELLNAYEVL 63
Cdd:PRK09430 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPemmEMAKEKAQEIQAAYELI 260
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 295-319 7.17e-09

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 51.34  E-value: 7.17e-09
                          10        20
                  ....*....|....*....|....*
gi 359481801  295 FYCVLCRKKFKSEKQWKNHEKSKKH 319
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 9-112 8.26e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 57.65  E-value: 8.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDklvhsgLSK-ADATAQFQELLNAYEVLSNPEERAWYDS--HRS-------- 77
Cdd:PRK14296   7 YEVLGVSKTASEQEIRQAYRKLAKQYHPD------LNKsPDAHDKMVEINEAADVLLDKDKRKQYDQfgHAAfdgssgfs 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 359481801  78 ------QILFSNPTSSNG-SVPNLFSFFSNSVYSGYDDTRKG 112
Cdd:PRK14296  81 snfgdfEDLFSNMGSSGFsSFTNIFSDFFGSNKSDYQRSTKG 122
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 9-73 1.75e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 53.48  E-value: 1.75e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsgLSKADATAQFQELLNAYEVLSNPEERAWYD 73
Cdd:PRK14300   6 YQILGVSKTASQADLKKAYLKLAKQYHPDT-----TDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 295-326 7.56e-07

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 45.71  E-value: 7.56e-07
                           10        20        30
                   ....*....|....*....|....*....|..
gi 359481801   295 FYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEF 326
Cdd:smart00451   4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PRK14288 PRK14288
molecular chaperone DnaJ;
9-108 6.39e-04

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 42.37  E-value: 6.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801   9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILfsnptSSN 88
Cdd:PRK14288   6 YEILEVEKHSNQETIKKSYRKLALKYHPDR----NAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL-----NQA 76

                         90       100
                 ....*....|....*....|
gi 359481801  89 GSVPNLFSFFSNSVYSGYDD 108
Cdd:PRK14288  77 GASQSDFSDFFEDLGSFFED 96
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 9-85 8.93e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 42.47  E-value: 8.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 359481801    9 YEVLGLTTDATADEIRSAYKKLALQRHPDKlvhsgLSKADATAQFQELLNAYEVLSNPEERAWYDSHR----SQILFSNP 84
Cdd:PTZ00341  576 YDILGVGVNADMKEISERYFKLAENYYPPK-----RSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGydgiKGVNFIHP 650


                  .
gi 359481801   85 T 85
Cdd:PTZ00341  651 S 651
UFD2 COG5112
U1-like Zn-finger-containing protein [General function prediction only];
294-328 7.74e-03

U1-like Zn-finger-containing protein [General function prediction only];


Pssm-ID: 227443  Cd Length: 126  Bit Score: 36.98  E-value: 7.74e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 359481801 294 EFYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEFRE 328
Cdd:COG5112   55 QHYCIECARYFITEKALMEHKKGKVHKRRAKELRE 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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