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Conserved domains on  [gi|219112775|ref|XP_002178139|]
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predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

Protein Classification

FoF1 ATP synthase subunit gamma( domain architecture ID 10446395)

FoF1 ATP synthase subunit gamma is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

EC:  7.1.2.2
Gene Ontology:  GO:0045261|GO:0005524|GO:0046933|GO:0042777
PubMed:  25730883|30888962|25667968|18216260|8951091
SCOP:  4000503

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt pfam00231
ATP synthase;
27-302 1.22e-95

ATP synthase;


:

Pssm-ID: 459722  Cd Length: 285  Bit Score: 284.03  E-value: 1.22e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   27 KQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSE-----LGGAPKLVEGATFDELPQKVLIVPFTSD 101
Cdd:pfam00231   3 KEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEvladlAAASPEDSHPLLERREVKKVGLIVITSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  102 KGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEKIVRSATDVVTPGTYALASGLASELIASGAAS 181
Cdd:pfam00231  83 RGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGSLGDKPTFEEAAEIADELLDAFLAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  182 DYDAVVIIYNSFVNAATYNQMYKVVTPF--VTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQSSR 259
Cdd:pfam00231 163 EIDEVYLVYNRFVSAISQEPTVEQLLPLdpEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAAR 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 219112775  260 MTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASA 302
Cdd:pfam00231 243 MTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
 
Name Accession Description Interval E-value
ATP-synt pfam00231
ATP synthase;
27-302 1.22e-95

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 284.03  E-value: 1.22e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   27 KQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSE-----LGGAPKLVEGATFDELPQKVLIVPFTSD 101
Cdd:pfam00231   3 KEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEvladlAAASPEDSHPLLERREVKKVGLIVITSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  102 KGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEKIVRSATDVVTPGTYALASGLASELIASGAAS 181
Cdd:pfam00231  83 RGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGSLGDKPTFEEAAEIADELLDAFLAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  182 DYDAVVIIYNSFVNAATYNQMYKVVTPF--VTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQSSR 259
Cdd:pfam00231 163 EIDEVYLVYNRFVSAISQEPTVEQLLPLdpEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAAR 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 219112775  260 MTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASA 302
Cdd:pfam00231 243 MTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 24-300 3.35e-93

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 277.54  E-value: 3.35e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  24 ATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSE-LGGAPKLVEGATFDELPQ----KVLIVPF 98
Cdd:cd12151    1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEvLQRLLSSLDDEDPPLLEKrevkKVLLIVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  99 TSDKGLCGGVNSYITRAVRNCIKklQAQGKDADIVLIGDKGRAQLRRFHpEKIVRSATDVVTPGTYALASGLASELIASG 178
Cdd:cd12151   81 TSDRGLCGGFNSNIIKAAEELIK--EADGKEVKLIVVGKKGRDYLKRRG-YNIALPFSDIGDDPTYFEAASIIEELILDF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 179 AASDYDAVVIIYNSFVNAATYNQMYKVVTPFVT---MSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASE 255
Cdd:cd12151  158 LNGEIDEVYIIYNKFKSAISQEPVVEQLLPLDKeeeEEESEGSRSDYIFEPDPEEVLDALLPFYLASLLYRALLESLASE 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 219112775 256 QSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGA 300
Cdd:cd12151  238 QAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 23-303 1.80e-89

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 268.17  E-value: 1.80e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF-----NGW----TSELGGAPKLVEGATfdelPQKV 93
Cdd:COG0224    1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYaeklrEVLaalaAASPEYDHPLLEERE----VKRV 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  94 LIVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPeKIVRSATDVVTPGTYALASGLASE 173
Cdd:COG0224   77 GLIVITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGI-NVVAEFTGLSDKPSFEDAKEIAEE 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 174 LIASGAASDYDAVVIIYNSFVNAATYNQMYKVVTPFV---TMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMD 250
Cdd:COG0224  156 LLDAFLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDpeeLEEAEWETRADYIFEPSPEEILDALLPRYLESQIYQALLE 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 219112775 251 SAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:COG0224  236 SAASEHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEAL 288
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 24-303 1.77e-85

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 257.99  E-value: 1.77e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   24 ATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF-NGWTSELGGAPKLVEGATFDEL----PQKVLIVPF 98
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYaEKIRAVLGNLATKLLNVDHPLLksreVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   99 TSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRfHPEKIVRSATDVVTPGTYALASGLASELIASG 178
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKR-RGDNIVLSITGLSDQPTFEEASGIADKLLDAF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  179 AASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESLSG--YEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQ 256
Cdd:TIGR01146 160 DAGEFDELYIVYNKFVSSISQEPTVKQLLPLSAQGPDEGFKFSqdYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQ 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 219112775  257 SSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:TIGR01146 240 AARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 286
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 23-303 3.54e-84

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 254.65  E-value: 3.54e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF--------NGWTSELGGAPKLVEGATfdelPQKVL 94
Cdd:PRK05621   1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYaekirkviSHLASASEYDHPLLVERE----VKRVG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  95 IVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHpEKIVRSATDVVTPGTYALASGLASEL 174
Cdd:PRK05621  77 YIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRG-INVVAEYTGLGDQPTFEEAIGIAKKL 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 175 IASGAASDYDAVVIIYNSFVNAATynQMYKVVT--PFVTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSA 252
Cdd:PRK05621 156 LDAYDNGEFDELYIVYNKFVNTLS--QEPTVEQllPLEKEEEEEETSWDYEYEPDAEEILDALLPRYVESQIYQALLENK 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 219112775 253 ASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:PRK05621 234 ASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284
 
Name Accession Description Interval E-value
ATP-synt pfam00231
ATP synthase;
27-302 1.22e-95

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 284.03  E-value: 1.22e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   27 KQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSE-----LGGAPKLVEGATFDELPQKVLIVPFTSD 101
Cdd:pfam00231   3 KEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEvladlAAASPEDSHPLLERREVKKVGLIVITSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  102 KGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEKIVRSATDVVTPGTYALASGLASELIASGAAS 181
Cdd:pfam00231  83 RGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGSLGDKPTFEEAAEIADELLDAFLAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  182 DYDAVVIIYNSFVNAATYNQMYKVVTPF--VTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQSSR 259
Cdd:pfam00231 163 EIDEVYLVYNRFVSAISQEPTVEQLLPLdpEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAAR 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 219112775  260 MTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASA 302
Cdd:pfam00231 243 MTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 24-300 3.35e-93

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 277.54  E-value: 3.35e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  24 ATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSE-LGGAPKLVEGATFDELPQ----KVLIVPF 98
Cdd:cd12151    1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEvLQRLLSSLDDEDPPLLEKrevkKVLLIVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  99 TSDKGLCGGVNSYITRAVRNCIKklQAQGKDADIVLIGDKGRAQLRRFHpEKIVRSATDVVTPGTYALASGLASELIASG 178
Cdd:cd12151   81 TSDRGLCGGFNSNIIKAAEELIK--EADGKEVKLIVVGKKGRDYLKRRG-YNIALPFSDIGDDPTYFEAASIIEELILDF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 179 AASDYDAVVIIYNSFVNAATYNQMYKVVTPFVT---MSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASE 255
Cdd:cd12151  158 LNGEIDEVYIIYNKFKSAISQEPVVEQLLPLDKeeeEEESEGSRSDYIFEPDPEEVLDALLPFYLASLLYRALLESLASE 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 219112775 256 QSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGA 300
Cdd:cd12151  238 QAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 23-303 1.80e-89

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 268.17  E-value: 1.80e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF-----NGW----TSELGGAPKLVEGATfdelPQKV 93
Cdd:COG0224    1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYaeklrEVLaalaAASPEYDHPLLEERE----VKRV 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  94 LIVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPeKIVRSATDVVTPGTYALASGLASE 173
Cdd:COG0224   77 GLIVITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGI-NVVAEFTGLSDKPSFEDAKEIAEE 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 174 LIASGAASDYDAVVIIYNSFVNAATYNQMYKVVTPFV---TMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMD 250
Cdd:COG0224  156 LLDAFLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDpeeLEEAEWETRADYIFEPSPEEILDALLPRYLESQIYQALLE 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 219112775 251 SAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:COG0224  236 SAASEHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEAL 288
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 24-303 1.77e-85

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 257.99  E-value: 1.77e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   24 ATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF-NGWTSELGGAPKLVEGATFDEL----PQKVLIVPF 98
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYaEKIRAVLGNLATKLLNVDHPLLksreVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775   99 TSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRfHPEKIVRSATDVVTPGTYALASGLASELIASG 178
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKR-RGDNIVLSITGLSDQPTFEEASGIADKLLDAF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  179 AASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESLSG--YEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQ 256
Cdd:TIGR01146 160 DAGEFDELYIVYNKFVSSISQEPTVKQLLPLSAQGPDEGFKFSqdYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQ 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 219112775  257 SSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:TIGR01146 240 AARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 286
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 23-303 3.54e-84

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 254.65  E-value: 3.54e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPF--------NGWTSELGGAPKLVEGATfdelPQKVL 94
Cdd:PRK05621   1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYaekirkviSHLASASEYDHPLLVERE----VKRVG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  95 IVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHpEKIVRSATDVVTPGTYALASGLASEL 174
Cdd:PRK05621  77 YIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRG-INVVAEYTGLGDQPTFEEAIGIAKKL 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 175 IASGAASDYDAVVIIYNSFVNAATynQMYKVVT--PFVTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSA 252
Cdd:PRK05621 156 LDAYDNGEFDELYIVYNKFVNTLS--QEPTVEQllPLEKEEEEEETSWDYEYEPDAEEILDALLPRYVESQIYQALLENK 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 219112775 253 ASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:PRK05621 234 ASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284
PRK13423 PRK13423
F0F1 ATP synthase subunit gamma; Provisional
 23-305 5.75e-73

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237384  Cd Length: 288  Bit Score: 226.09  E-value: 5.75e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSELGGAPKLVEGATFDEL-----PQKVLIVP 97
Cdd:PRK13423   1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLlvpreVKKALLVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  98 FTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEkIVRSATDVVTPGTYALASGLASELIAS 177
Cdd:PRK13423  81 VTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLI-IRKNYGGVVANLTYETAALLAQELIEG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 178 GAASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMS-ETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQ 256
Cdd:PRK13423 160 YLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEaADDEYLPEYIYEPSRDALLAELLPKHVEVQIYRALLESVASEH 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 219112775 257 SSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALDG 305
Cdd:PRK13423 240 GARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEALKG 288
PRK13424 PRK13424
F0F1 ATP synthase subunit gamma; Provisional
 23-305 1.55e-52

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172047  Cd Length: 291  Bit Score: 173.78  E-value: 1.55e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVP----FNGWTSEL-----GGAPKLVEGAtfdELPQKV 93
Cdd:PRK13424   1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPyaekFYDMLGDLasradSSAHPLLEVR---EEIKTC 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  94 LIVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEkIVRSATDVVTPGTYALASGLASE 173
Cdd:PRK13424  78 GIVLITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFE-IVTAYADQMTSFDFQLANSIGLE 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 174 LIASGAASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESL---SGYEFDGDKAEAMEDLYEYMLASQVFHSFMD 250
Cdd:PRK13424 157 VIDGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEEEAgasSEYIYEPSVEGLLAELLPRFIKVQIYRGLLD 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219112775 251 SAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALDG 305
Cdd:PRK13424 237 TSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEALKG 291
PRK14111 PRK14111
F0F1 ATP synthase subunit gamma; Provisional
 23-305 6.18e-48

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184515  Cd Length: 290  Bit Score: 161.89  E-value: 6.18e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSELGG--APKLVEGATFDELPQK------VL 94
Cdd:PRK14111   1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGdlTARTVGAARVGPLLEKrptvkrVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  95 IVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHpEKIVRSATDVVTPGTYALASGLASEL 174
Cdd:PRK14111  81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTG-QALVAEFTRLGDAPKLEAILPVATSA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 175 IASGAASDYDAVVIIYNSFVNaaTYNQMYKV--VTPFVTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSA 252
Cdd:PRK14111 160 INGFQSGKYDEVYVLYSEFIN--TLVQRPTIkqLLPIEPPEISTTTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVLESI 237

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 219112775 253 ASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALDG 305
Cdd:PRK14111 238 ASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAALGS 290
PRK13427 PRK13427
F0F1 ATP synthase subunit gamma; Provisional
 23-304 9.52e-47

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172049  Cd Length: 289  Bit Score: 158.95  E-value: 9.52e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSELGGAPKLVEGATFD------ELPQKVLIV 96
Cdd:PRK13427   1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSpylrrpEKIRTVALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  97 PFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGrAQLRRFHPEKIVRSATDVVTPGTYALASGLASELIA 176
Cdd:PRK13427  81 IITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKG-ISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFME 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 177 SGAASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESLSGYEF--DGDKAEAMEDLYEYMLASQVFHSFMDSAAS 254
Cdd:PRK13427 160 RFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAEGSVQDDVvyEPSPEAILESLLPLVVKTAFLKAILEANAS 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 219112775 255 EQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALD 304
Cdd:PRK13427 240 EQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADALN 289
PRK14110 PRK14110
F0F1 ATP synthase subunit gamma; Provisional
 27-304 1.37e-43

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184514  Cd Length: 291  Bit Score: 150.69  E-value: 1.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  27 KQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSELGGapKLVEGATFDELP-------QKVLIVPFT 99
Cdd:PRK14110   7 RDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELIS--DLAAHIDRESHPllerreeKNVDLVIIT 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 100 SDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGrAQLRRFHPEKIVRSATDVVTPG-TYALASGLASELIASG 178
Cdd:PRK14110  85 ADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKG-VQYFSKRGYNIIKSYEDVFRKEiNFSVVKEVGGILASRY 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 179 AASDYDAVVIIYNSFVNAATYNQMYKVVTPF-VTMSETE-ESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMDSAASEQ 256
Cdd:PRK14110 164 IEEETDAVYLINNEMITRATYKPKVRKFLPFeVEAQEKKlDELSVYNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEH 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 219112775 257 SSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALD 304
Cdd:PRK14110 244 FARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEAMK 291
PRK13425 PRK13425
F0F1 ATP synthase subunit gamma; Provisional
 23-305 1.09e-39

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 139564  Cd Length: 291  Bit Score: 140.72  E-value: 1.09e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNGWTSELGGAPKLVEGATFDEL------PQKVLIV 96
Cdd:PRK13425   1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLlsprseVNKVLVI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  97 PFTSDKGLCGGVNSYITR-AVRNCIKKLQAQGKDADIVLI--GDKGRAQLRRFHpEKIVRSATDVVTPGTYALA---SGL 170
Cdd:PRK13425  81 LITSDRGLCGAFNTNIIKlAQKVIHEDYAALHAKGGVSMIcaGTRGFDFFRKRG-YNIVKGYPGVFQNLDFSVAkeiAET 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 171 ASELIASGAAsdyDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSFMD 250
Cdd:PRK13425 160 ASGMYLRGEV---DKVVVVYNEFKSVLAPNLKSEVLLPITPEKPGAEGGSDYIYEPSPAAIIDELVPKHLNTQVWRMMLE 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219112775 251 SAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASALDG 305
Cdd:PRK13425 237 SNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADALQG 291
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 23-303 4.28e-36

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237385  Cd Length: 291  Bit Score: 131.05  E-value: 4.28e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFNG-----WTSELGGAPKLVEGATFDELPQKVLIVP 97
Cdd:PRK13426   1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRklnhiLTNFLSADLDVESPFTVERPVKRVAIVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  98 FTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDaDIVL--IGDKGRAQLRR--FHPEKivrSATDVVTPGTYALASGLASE 173
Cdd:PRK13426  81 FSSNTSLCGGFNANIIKLLLQTIGEYRTLGQD-NILIypVGKKIEEAVKKlgFKVQG---DYQTLADKPSYEEAAALAMR 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 174 LIASGAASDYDAVVIIYNSFVNAATYNQMYKVVTPF-----VTMSETEESLSGYEFDGDKAEAMEDLYEYMLASQVFHSF 248
Cdd:PRK13426 157 LMELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIdlsqeKNAEHAGGVANDYIIEPSADTVLNDLIPKLLSLKIYTAL 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219112775 249 MDSAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:PRK13426 237 LDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMAN 291
PRK13422 PRK13422
F0F1 ATP synthase subunit gamma; Provisional
 23-303 5.38e-27

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184046  Cd Length: 298  Bit Score: 107.06  E-value: 5.38e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  23 MATEKQIFNQIQSTKNLSKITSSMKMVSAAKLKGDENRLARAVPFngwtseLGGAPKLVEGAT-----------FDELPQ 91
Cdd:PRK13422   1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPY------VESANTIIKNVTaasidypnpylFDRDVK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775  92 KVLIVPFTSDKGLCGGVNSYITRAVRNCIKKLQAQGKDADIVLIGDKGRAQLRRFHPEKIVRSA--TDVVTPGTYALASG 169
Cdd:PRK13422  75 RVGYIVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAhyNDKDKEGSIRAIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219112775 170 LASELIASGAASDYDAVVIIYNSFVNAATYNQMYKVVTPFVTMSETEESLSG----------YEFDGDKAEAMEDLYEYM 239
Cdd:PRK13422 155 AVKVMLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANkekatkghwdYIYERDIEEVLNALCIRY 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 219112775 240 LASQVFHSFMDSAASEQSSRMTAMENASKNANEMVDSLTLKYNRARQSRITTELIEIISGASAL 303
Cdd:PRK13422 235 IEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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