NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|195575855|ref|XP_002077792|]
View 

membrane steroid-binding protein 1 [Drosophila simulans]

Protein Classification

cytochrome b5-like heme/steroid binding domain-containing protein( domain architecture ID 1904613)

cytochrome b5-like heme/steroid binding domain-containing protein

CATH:  3.10.120.10
PubMed:  12537557
SCOP:  3000073

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4892 super family cl44153
Predicted heme/steroid binding protein [General function prediction only];
87-172 1.65e-03

Predicted heme/steroid binding protein [General function prediction only];


The actual alignment was detected with superfamily member COG4892:

Pssm-ID: 443920 [Multi-domain]  Cd Length: 75  Bit Score: 35.96  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195575855  87 TLEELTAFDGSSPSlPIYTALNGLIYDLSPGRE-KFSSHgpYSLLAGCNANKVlnIACSSMGvcaANVIRRweqslraeF 165
Cdd:COG4892    5 TLEELAKYNGKDGN-PAYVAVNGKVYDVTNSRLwKNGTH--YGHWAGQDLTDE--LKDAPHG---ESVLEK--------F 68


                 ....*..
gi 195575855 166 QVVGYLV 172
Cdd:COG4892   69 PVVGKLV 75
 
Name Accession Description Interval E-value
COG4892 COG4892
Predicted heme/steroid binding protein [General function prediction only];
87-172 1.65e-03

Predicted heme/steroid binding protein [General function prediction only];


Pssm-ID: 443920 [Multi-domain]  Cd Length: 75  Bit Score: 35.96  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195575855  87 TLEELTAFDGSSPSlPIYTALNGLIYDLSPGRE-KFSSHgpYSLLAGCNANKVlnIACSSMGvcaANVIRRweqslraeF 165
Cdd:COG4892    5 TLEELAKYNGKDGN-PAYVAVNGKVYDVTNSRLwKNGTH--YGHWAGQDLTDE--LKDAPHG---ESVLEK--------F 68


                 ....*..
gi 195575855 166 QVVGYLV 172
Cdd:COG4892   69 PVVGKLV 75
 
Name Accession Description Interval E-value
COG4892 COG4892
Predicted heme/steroid binding protein [General function prediction only];
87-172 1.65e-03

Predicted heme/steroid binding protein [General function prediction only];


Pssm-ID: 443920 [Multi-domain]  Cd Length: 75  Bit Score: 35.96  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195575855  87 TLEELTAFDGSSPSlPIYTALNGLIYDLSPGRE-KFSSHgpYSLLAGCNANKVlnIACSSMGvcaANVIRRweqslraeF 165
Cdd:COG4892    5 TLEELAKYNGKDGN-PAYVAVNGKVYDVTNSRLwKNGTH--YGHWAGQDLTDE--LKDAPHG---ESVLEK--------F 68


                 ....*..
gi 195575855 166 QVVGYLV 172
Cdd:COG4892   69 PVVGKLV 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH