|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
326-938 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 824.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 326 MPTISINRDDLHTALGRSYTQKEFEDLCFDFGLELDEVTSEKEELEKSGSAKAK-----DASEAIIYKIDIPANRcilvp 400
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEedggaDDDEEVIYKIDVPANR----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 401 fdtnhhsYDLLCIEGLVRGLKIFLNKMGAPQYQLKGEPKET---MTITANTAAVRPFGVAAVLRNVNMTQKAYDSFIDLQ 477
Cdd:PLN02265 76 -------YDLLCLEGLARALRVFLGTEPIPTYRLAEISKGSilkMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 478 EKLHQNICRRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRvpdafELKEYNAKELLTMYQQDLQLKQYLHILEKEP 557
Cdd:PLN02265 149 DKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPEDINFVPLK-----QTKSFRADELMEFYKSDMKLKKFLHIIENSP 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 558 LIPVIRDANGVVLSMPPIINGDHSRISTATKNIFIECTATDLTKAKIVLDIIVTMFSEHCAEPFTIEPVNVVNPDGKTVA 637
Cdd:PLN02265 224 VFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTV 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 638 YPALSTRTTSVQAEDIYRRMGIkreQADPAKLAELLTRMQL-TSSLDADQKTISVQVPPTRADVLHPCDIWEDAAIAFGF 716
Cdd:PLN02265 304 YPDLSVRTMEVDLSYINSSIGV---SLDAEEVASLLNKMQLqAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGY 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 717 NNIEWTEPAVSTSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFASLRRPDDGKTAAVISNPKTQDFQVCRSNL 796
Cdd:PLN02265 381 NNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSL 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 797 LSGLLRTVHSNLRMPLPIKVFEVSDVVLLNPAAETGASNHRRLAAVQAGKSAGFEAVQGLLDLVMQMLEVPRDDQlalkP 876
Cdd:PLN02265 461 LPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEI----G 536
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167524996 877 DGRAYTLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELEFFL 938
Cdd:PLN02265 537 DNNGYYVEPSNEPEYFpGR--QASIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
326-938 |
1.06e-142 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 435.72 E-value: 1.06e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 326 MPTISINRDDLHtalgRSYTQKEFEDLCFDFGLELDEVtsekEELEKSGSakakdaseaiIYKIDIPANRcilvpfdtnh 405
Cdd:TIGR00471 1 MPTVTVYKDDLE----DLLIGTDRDEILEELPMMGDEI----EGFDEESP----------EIKVEFNPNR---------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 406 hsYDLLCIEGLVRGLKIFLN-KMGAPQYQLK-GEPKetMTITANTAAVRPFGVAAVLRNVNMTQKAYDSFIDLQEKLHQN 483
Cdd:TIGR00471 53 --PDLLSVEGLARSLRGYLGiEKGLKSYDSKkGDVK--LTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWN 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 484 ICRRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRVPDAFELKEYNAKELltmyqqdlQLKQYLHILEKEPLIPVIR 563
Cdd:TIGR00471 129 IGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILEEHP--------KGIRYAHIIEDSDKFPLIL 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 564 DANGVVLSMPPIINGDHSRISTATKNIFIECTATDLTKAKIVLDIIVTMFSEHCAEPFTIEPvnVVNPDGKTVaYPALST 643
Cdd:TIGR00471 201 DSKDDVLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVE--VERPDEHLG-QPNLAP 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 644 RTTSVQAEDIYRRMGIkreQADPAKLAELLTRMqltsSLDADQKT--ISVQVPPTRADVLHPCDIWEDAAIAFGFNNIEW 721
Cdd:TIGR00471 278 RFMEVSVEYINSLLGL---NLSADEIAHSLKKM----RLDAVQSDekLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPP 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 722 TEPAVSTSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFASLRRPDDGKTAavISNPKTQDFQVCRSNLLSGLL 801
Cdd:TIGR00471 351 ELPLINTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVK--VANPKTLEYTIVRTSLLPGLL 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 802 RTVHSNLRMPLPIKVFEVSDVVLLNPAAETGASNHRRLAAVQAGKSAGFEAVQGLLDLVMQMLevprddqlalkpdGRAY 881
Cdd:TIGR00471 429 ETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL-------------GIEY 495
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 167524996 882 TLRPSQDPAFFGQLGaADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELEFFL 938
Cdd:TIGR00471 496 EIEESEHPSFIPGRG-AKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| NAP |
pfam00956 |
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ... |
71-244 |
4.69e-65 |
|
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.
Pssm-ID: 460010 Cd Length: 203 Bit Score: 217.04 E-value: 4.69e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 71 NNPQISQLIMEHDEAVLEYLTDISGEYKEPGLtGFTLTFTFRENPYFTNTTISKTYNLapgpeeddELEYNGPIFQSAVA 150
Cdd:pfam00956 41 NLPLLSEMITERDEPALKHLKDIKIEYPLDEP-GFTLEFHFAPNPYFTNTVLTKTYYY--------QDEPDGPEIIKAEG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 151 DPINWKEGMDVTVKSVTKKQRKKTGKNkgdTRTVTKSVPQESFFHFFTPPQL-NPEEASEEEIQTAAELLNTDYLIGEVF 229
Cdd:pfam00956 112 TEIDWKEGKNVTVKTVKKKQRNKGTGQ---TRTVTKTVPTESFFNFFSPPEVpEDEDEDDEEDEELEERLELDYEIGEDI 188
|
170
....*....|....*
gi 167524996 230 LNDIIPKAVLWYTGE 244
Cdd:pfam00956 189 KDKIIPRAVLYFTGE 203
|
|
| PTZ00007 |
PTZ00007 |
(NAP-L) nucleosome assembly protein -L; Provisional |
61-246 |
5.16e-49 |
|
(NAP-L) nucleosome assembly protein -L; Provisional
Pssm-ID: 240226 [Multi-domain] Cd Length: 337 Bit Score: 177.29 E-value: 5.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 61 LDKFWFACLCNNPQISQLIMEHDEAVLEYLTDISGEYKEP-GLTGFTLTFTFRENPYFTNTTISKTYNLAPGPEEDdele 139
Cdd:PTZ00007 99 LPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPnKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDD---- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 140 ynGPIFQSAVADPINWKEGMDVTVKSVTKKQRKKTGKnkgDTRTVTKSVPQESFFHFFTPPQLNPEEA----SEEEIQTA 215
Cdd:PTZ00007 175 --EPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTK---ETRTVTETVDRESFFNFFTSHEVPSDEElekmSKHEIAEL 249
|
170 180 190
....*....|....*....|....*....|.
gi 167524996 216 AELLNTDYLIGEVFLNDIIPKAVLWYTGEAE 246
Cdd:PTZ00007 250 EMIVETDYEIGITIRDKLIPYAVYWFLGEAI 280
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
719-934 |
4.13e-48 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 170.42 E-value: 4.13e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 719 IEWTEPAVST-SGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFAsLRRPDDGKTAAVISNPKTQDFQVCRSNLL 797
Cdd:pfam17759 1 IPSTLPKGPTtGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDK-LLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 798 SGLLRTVHSNLRMPLP-IKVFEVSDVVLLNPAaETGASNHRRLAAVQAGKS-----------AGFEAVQGLLDLVMQMLE 865
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDEL-EELPREPRRLAGLLTGKRlpeswqgkarpVDFYDLKGIVEALLAALG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 866 VPRddqlalkpdgraYTLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELEL 934
Cdd:pfam17759 159 IDD------------YEFEAADHPALHpGR--SAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFELDL 214
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
734-935 |
1.41e-42 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 153.95 E-value: 1.41e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 734 PINKLADQLRRLLVEANYTEALTFALCKHDDNFaslRRPDDGKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNLRMP-L 812
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAE---LFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 813 PIKVFEVSDVVLLNPAaetGASNHRRLAAVQAGK-----------SAGFEAVQGLLDLVMQMLEVPRDdqlalkpdgraY 881
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALGIIVE-----------F 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 167524996 882 TLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELE 935
Cdd:cd00769 144 ELEELDADLFHpGR--SAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLD 196
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
561-935 |
2.84e-34 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 141.46 E-value: 2.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 561 VIRDANGVVlSMPPIINGDHSRISTATKNIFIEC----------TA----------------TDLTKAKIVLDIIVTMFS 614
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTArrlglhsdasyrfergVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 615 EHCAEpfTIEPvnvvnpdGKTVAYPALSTRTT-SVQAEDIYRRMGIKreqADPAKLAELLTRMQLTssLDADQKTISVQV 693
Cdd:COG0072 382 EIAGG--EVGP-------GIVDVYPEPPEPKTiTLRLARINRLLGVE---IPAEEIEEILERLGFE--VEEDGDGLTVTV 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 694 PPTRADVLHPCDIWEDaaIA--FGFNNIEWTEPAVSTSGKQQ-PINKLADQLRRLLVEANYTEALTFALCKHDDnfasLR 770
Cdd:COG0072 448 PSWRFDIEIEADLIEE--VAriYGYDNIPSTLPRAPLAGGGLtEAQRLRRRVRRALAARGYQEVITYSFVSPED----AD 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 771 RPDDGKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNL--RMPlPIKVFEVSDVVLlnPAAETGASNHRRLAAV------ 842
Cdd:COG0072 522 LFGLRREAVRLANPISEDLSVMRTSLLPGLLEAAAYNLnrGQK-DVRLFEIGRVFL--PDEGEEPREPLHLAGVltgnre 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 843 -----QAGKSAGFEAVQGLLDLVMQMLEVPRddqlalkpdgraYTLRPSQDPAF-FGQlgAADIIFRGARVGVLGVVHPE 916
Cdd:COG0072 599 peswgGKARPVDFFDLKGDVEALLAALGVPK------------LEFEAAEHPALhPGR--SAEILLGGKVIGFIGELHPK 664
|
410
....*....|....*....
gi 167524996 917 VLANYNLKLAASALELELE 935
Cdd:COG0072 665 VLKALDLPGPVYVFELDLD 683
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
452-618 |
2.52e-27 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 109.27 E-value: 2.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 452 RPFGVAAVLRNVNmtqKAYDSFIDLQEKLHQNICrRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRVPDAFElKEy 531
Cdd:smart00873 1 CPRYLGRVIRGVK---NTRPSPEWLQERLHRAGI-RPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKE-GE- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 532 nakELLTMYQQDLQLKQYLHILEKEPLIPVIRDANGV----------VLSMPPIINGDHS-RISTATKNIFIECTA---- 596
Cdd:smart00873 75 ---KFETLDGKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASGrfer 151
|
170 180
....*....|....*....|...
gi 167524996 597 -TDLTKAKIVLDIIVTMFSEHCA 618
Cdd:smart00873 152 gVDPELVELALDRAAALLLEICG 174
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
326-938 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 824.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 326 MPTISINRDDLHTALGRSYTQKEFEDLCFDFGLELDEVTSEKEELEKSGSAKAK-----DASEAIIYKIDIPANRcilvp 400
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEedggaDDDEEVIYKIDVPANR----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 401 fdtnhhsYDLLCIEGLVRGLKIFLNKMGAPQYQLKGEPKET---MTITANTAAVRPFGVAAVLRNVNMTQKAYDSFIDLQ 477
Cdd:PLN02265 76 -------YDLLCLEGLARALRVFLGTEPIPTYRLAEISKGSilkMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 478 EKLHQNICRRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRvpdafELKEYNAKELLTMYQQDLQLKQYLHILEKEP 557
Cdd:PLN02265 149 DKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPEDINFVPLK-----QTKSFRADELMEFYKSDMKLKKFLHIIENSP 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 558 LIPVIRDANGVVLSMPPIINGDHSRISTATKNIFIECTATDLTKAKIVLDIIVTMFSEHCAEPFTIEPVNVVNPDGKTVA 637
Cdd:PLN02265 224 VFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTV 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 638 YPALSTRTTSVQAEDIYRRMGIkreQADPAKLAELLTRMQL-TSSLDADQKTISVQVPPTRADVLHPCDIWEDAAIAFGF 716
Cdd:PLN02265 304 YPDLSVRTMEVDLSYINSSIGV---SLDAEEVASLLNKMQLqAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGY 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 717 NNIEWTEPAVSTSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFASLRRPDDGKTAAVISNPKTQDFQVCRSNL 796
Cdd:PLN02265 381 NNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSL 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 797 LSGLLRTVHSNLRMPLPIKVFEVSDVVLLNPAAETGASNHRRLAAVQAGKSAGFEAVQGLLDLVMQMLEVPRDDQlalkP 876
Cdd:PLN02265 461 LPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEI----G 536
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167524996 877 DGRAYTLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELEFFL 938
Cdd:PLN02265 537 DNNGYYVEPSNEPEYFpGR--QASIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
326-938 |
1.06e-142 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 435.72 E-value: 1.06e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 326 MPTISINRDDLHtalgRSYTQKEFEDLCFDFGLELDEVtsekEELEKSGSakakdaseaiIYKIDIPANRcilvpfdtnh 405
Cdd:TIGR00471 1 MPTVTVYKDDLE----DLLIGTDRDEILEELPMMGDEI----EGFDEESP----------EIKVEFNPNR---------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 406 hsYDLLCIEGLVRGLKIFLN-KMGAPQYQLK-GEPKetMTITANTAAVRPFGVAAVLRNVNMTQKAYDSFIDLQEKLHQN 483
Cdd:TIGR00471 53 --PDLLSVEGLARSLRGYLGiEKGLKSYDSKkGDVK--LTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWN 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 484 ICRRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRVPDAFELKEYNAKELltmyqqdlQLKQYLHILEKEPLIPVIR 563
Cdd:TIGR00471 129 IGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILEEHP--------KGIRYAHIIEDSDKFPLIL 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 564 DANGVVLSMPPIINGDHSRISTATKNIFIECTATDLTKAKIVLDIIVTMFSEHCAEPFTIEPvnVVNPDGKTVaYPALST 643
Cdd:TIGR00471 201 DSKDDVLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVE--VERPDEHLG-QPNLAP 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 644 RTTSVQAEDIYRRMGIkreQADPAKLAELLTRMqltsSLDADQKT--ISVQVPPTRADVLHPCDIWEDAAIAFGFNNIEW 721
Cdd:TIGR00471 278 RFMEVSVEYINSLLGL---NLSADEIAHSLKKM----RLDAVQSDekLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPP 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 722 TEPAVSTSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFASLRRPDDGKTAavISNPKTQDFQVCRSNLLSGLL 801
Cdd:TIGR00471 351 ELPLINTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVK--VANPKTLEYTIVRTSLLPGLL 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 802 RTVHSNLRMPLPIKVFEVSDVVLLNPAAETGASNHRRLAAVQAGKSAGFEAVQGLLDLVMQMLevprddqlalkpdGRAY 881
Cdd:TIGR00471 429 ETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL-------------GIEY 495
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 167524996 882 TLRPSQDPAFFGQLGaADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELEFFL 938
Cdd:TIGR00471 496 EIEESEHPSFIPGRG-AKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| NAP |
pfam00956 |
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ... |
71-244 |
4.69e-65 |
|
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.
Pssm-ID: 460010 Cd Length: 203 Bit Score: 217.04 E-value: 4.69e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 71 NNPQISQLIMEHDEAVLEYLTDISGEYKEPGLtGFTLTFTFRENPYFTNTTISKTYNLapgpeeddELEYNGPIFQSAVA 150
Cdd:pfam00956 41 NLPLLSEMITERDEPALKHLKDIKIEYPLDEP-GFTLEFHFAPNPYFTNTVLTKTYYY--------QDEPDGPEIIKAEG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 151 DPINWKEGMDVTVKSVTKKQRKKTGKNkgdTRTVTKSVPQESFFHFFTPPQL-NPEEASEEEIQTAAELLNTDYLIGEVF 229
Cdd:pfam00956 112 TEIDWKEGKNVTVKTVKKKQRNKGTGQ---TRTVTKTVPTESFFNFFSPPEVpEDEDEDDEEDEELEERLELDYEIGEDI 188
|
170
....*....|....*
gi 167524996 230 LNDIIPKAVLWYTGE 244
Cdd:pfam00956 189 KDKIIPRAVLYFTGE 203
|
|
| PTZ00007 |
PTZ00007 |
(NAP-L) nucleosome assembly protein -L; Provisional |
61-246 |
5.16e-49 |
|
(NAP-L) nucleosome assembly protein -L; Provisional
Pssm-ID: 240226 [Multi-domain] Cd Length: 337 Bit Score: 177.29 E-value: 5.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 61 LDKFWFACLCNNPQISQLIMEHDEAVLEYLTDISGEYKEP-GLTGFTLTFTFRENPYFTNTTISKTYNLAPGPEEDdele 139
Cdd:PTZ00007 99 LPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPnKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDD---- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 140 ynGPIFQSAVADPINWKEGMDVTVKSVTKKQRKKTGKnkgDTRTVTKSVPQESFFHFFTPPQLNPEEA----SEEEIQTA 215
Cdd:PTZ00007 175 --EPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTK---ETRTVTETVDRESFFNFFTSHEVPSDEElekmSKHEIAEL 249
|
170 180 190
....*....|....*....|....*....|.
gi 167524996 216 AELLNTDYLIGEVFLNDIIPKAVLWYTGEAE 246
Cdd:PTZ00007 250 EMIVETDYEIGITIRDKLIPYAVYWFLGEAI 280
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
719-934 |
4.13e-48 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 170.42 E-value: 4.13e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 719 IEWTEPAVST-SGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFAsLRRPDDGKTAAVISNPKTQDFQVCRSNLL 797
Cdd:pfam17759 1 IPSTLPKGPTtGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDK-LLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 798 SGLLRTVHSNLRMPLP-IKVFEVSDVVLLNPAaETGASNHRRLAAVQAGKS-----------AGFEAVQGLLDLVMQMLE 865
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDEL-EELPREPRRLAGLLTGKRlpeswqgkarpVDFYDLKGIVEALLAALG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 866 VPRddqlalkpdgraYTLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELEL 934
Cdd:pfam17759 159 IDD------------YEFEAADHPALHpGR--SAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFELDL 214
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
734-935 |
1.41e-42 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 153.95 E-value: 1.41e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 734 PINKLADQLRRLLVEANYTEALTFALCKHDDNFaslRRPDDGKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNLRMP-L 812
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAE---LFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 813 PIKVFEVSDVVLLNPAaetGASNHRRLAAVQAGK-----------SAGFEAVQGLLDLVMQMLEVPRDdqlalkpdgraY 881
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALGIIVE-----------F 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 167524996 882 TLRPSQDPAFF-GQlgAADIIFRGARVGVLGVVHPEVLANYNLKLAASALELELE 935
Cdd:cd00769 144 ELEELDADLFHpGR--SAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLD 196
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
561-935 |
2.84e-34 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 141.46 E-value: 2.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 561 VIRDANGVVlSMPPIINGDHSRISTATKNIFIEC----------TA----------------TDLTKAKIVLDIIVTMFS 614
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTArrlglhsdasyrfergVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 615 EHCAEpfTIEPvnvvnpdGKTVAYPALSTRTT-SVQAEDIYRRMGIKreqADPAKLAELLTRMQLTssLDADQKTISVQV 693
Cdd:COG0072 382 EIAGG--EVGP-------GIVDVYPEPPEPKTiTLRLARINRLLGVE---IPAEEIEEILERLGFE--VEEDGDGLTVTV 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 694 PPTRADVLHPCDIWEDaaIA--FGFNNIEWTEPAVSTSGKQQ-PINKLADQLRRLLVEANYTEALTFALCKHDDnfasLR 770
Cdd:COG0072 448 PSWRFDIEIEADLIEE--VAriYGYDNIPSTLPRAPLAGGGLtEAQRLRRRVRRALAARGYQEVITYSFVSPED----AD 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 771 RPDDGKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNL--RMPlPIKVFEVSDVVLlnPAAETGASNHRRLAAV------ 842
Cdd:COG0072 522 LFGLRREAVRLANPISEDLSVMRTSLLPGLLEAAAYNLnrGQK-DVRLFEIGRVFL--PDEGEEPREPLHLAGVltgnre 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 843 -----QAGKSAGFEAVQGLLDLVMQMLEVPRddqlalkpdgraYTLRPSQDPAF-FGQlgAADIIFRGARVGVLGVVHPE 916
Cdd:COG0072 599 peswgGKARPVDFFDLKGDVEALLAALGVPK------------LEFEAAEHPALhPGR--SAEILLGGKVIGFIGELHPK 664
|
410
....*....|....*....
gi 167524996 917 VLANYNLKLAASALELELE 935
Cdd:COG0072 665 VLKALDLPGPVYVFELDLD 683
|
|
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
561-935 |
1.20e-32 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 136.07 E-value: 1.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 561 VIRDANGVVlSMPPIINGDHSRISTATKNIFIEC----------TA------TDLTK----------AKIVLDIIVTMFS 614
Cdd:PRK00629 302 VIADDKKPL-ALAGVMGGEDSEVTENTTNVLLESayfdpvsirkTArrlglrTDASYrfergvdpalTLLALERATALIL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 615 EH-CAEPFtiepvnvvnpDGKTVAYPALSTRTTSVQAEDIYRRMGIKreqADPAKLAELLTRMQLTSSLDADQkTISVQV 693
Cdd:PRK00629 381 ELgGGEVV----------EGVVDVYPLPKEPTITLRLERINRLLGTE---ISDEEIVDILKRLGFEVTEVDGD-GLTVTV 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 694 PPTRADVLHPCDIWEDaaIA--FGFNNIEWTEPAVS-TSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNfaslR 770
Cdd:PRK00629 447 PSWRFDIEIEEDLVEE--VAriYGYDNIPSTPPVAAlTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDA----K 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 771 RPDDGKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNL-RMPLPIKVFEVSDVVLlnpAAETGASNHRRLAAVQAG---- 845
Cdd:PRK00629 521 LFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLnRGNKDVALFEIGRVFL---PDGDLPREPEHLAGVLTGnrve 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 846 ------KSAGFEAVQGLLDLVMQMLEVPRDDqlalkpdgraytLRPSQDPAFF--GQlgAADIIFRGARVGVLGVVHPEV 917
Cdd:PRK00629 598 eswggkRPVDFFDLKGDVEALLEALGLPEVE------------FVAEFEAAALhpGR--SAEIYLDGKVIGFIGELHPKV 663
|
410
....*....|....*...
gi 167524996 918 LANYNLKLAASALELELE 935
Cdd:PRK00629 664 LKKLDLPGRTYVFELDLD 681
|
|
| PhetRS_B1 |
pfam18262 |
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human ... |
326-426 |
1.39e-32 |
|
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit.
Pssm-ID: 408077 Cd Length: 83 Bit Score: 120.98 E-value: 1.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 326 MPTISINRDDLHTALGRSYTQKEFEDLCFDFGLELDEVTSEKEELeksgsaKAKDASEAIIYKIDIPANRcilvpfdtnh 405
Cdd:pfam18262 1 MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQL------KTSWRSEEVVYKIDIPANR---------- 64
|
90 100
....*....|....*....|.
gi 167524996 406 hsYDLLCIEGLVRGLKIFLNK 426
Cdd:pfam18262 65 --YDLLCVEGLATALLIFKGK 83
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
452-618 |
2.52e-27 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 109.27 E-value: 2.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 452 RPFGVAAVLRNVNmtqKAYDSFIDLQEKLHQNICrRRTLVAIGTHDLDTIKGPFTYDAQKPEDVVFKPLRVPDAFElKEy 531
Cdd:smart00873 1 CPRYLGRVIRGVK---NTRPSPEWLQERLHRAGI-RPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKE-GE- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 532 nakELLTMYQQDLQLKQYLHILEKEPLIPVIRDANGV----------VLSMPPIINGDHS-RISTATKNIFIECTA---- 596
Cdd:smart00873 75 ---KFETLDGKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASGrfer 151
|
170 180
....*....|....*....|...
gi 167524996 597 -TDLTKAKIVLDIIVTMFSEHCA 618
Cdd:smart00873 152 gVDPELVELALDRAAALLLEICG 174
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
451-617 |
2.60e-17 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 80.67 E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 451 VRPFGVAAVLRNVNMTQ---------------KAYDSFIDLQEKLHQNICRrrtlvAIGTHDLDTIKGPftydaqkpedv 515
Cdd:pfam03483 1 ACPRYFGRVIRGVKKNRpspewlqrrlrragiRPINNVVDITNYVMLELGQ-----PLHAFDLDKIAGD----------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 516 vfkpLRVPDAFElKEynakELLTMYQQDLQLkqylhilekEPLIPVIRDANGVVlSMPPIINGDHSRISTATKNIFIECT 595
Cdd:pfam03483 65 ----IVVRLAKG-GE----KFTTLDGKEREL---------DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESA 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 167524996 596 A--------------------------TDLTKAKIVLDIIVTMFSEHC 617
Cdd:pfam03483 126 GfdpvairktarrlglrtdasyrfergVDPELVEAALDRATALLLELC 173
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
650-716 |
1.18e-12 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 63.57 E-value: 1.18e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167524996 650 AEDIYRRMGIKreqADPAKLAELLTRMQLTSSlDADQKTISVQVPPTRADVLHPCDIWEDAAIAFGF 716
Cdd:pfam03484 5 LDRINRLLGID---LSAEEIVEILERLGFEVE-EEDGDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
556-935 |
4.13e-12 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 70.12 E-value: 4.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 556 EPLIPVIRdANGVVLSMPPIINGDHSRISTATKNIFIE---CTATDLTKAKIVLDIiVTMFSEHCAEP------------ 620
Cdd:CHL00192 198 ENNILVVQ-ANNVIISIAGIISNEEIICDKNTKSILIEasiFDAAVIRKSSRKLGL-RTDRSIRYEKSlkndnlleayyr 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 621 ----FTIEPVNVVNpdGKTVAYPAL--STRTTSVQAEDIYRRMG-IKREQAD----PAKLAELLTRMQLTSSLDADQKTI 689
Cdd:CHL00192 276 lvslLRILNPKLKC--KFHFIYKKIknSSRRIKLSYKKIKDILGpIKINTNTrylsPKEITNALKRLNFKITYDSLKLNW 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 690 SVQVPPTRA-DVLHPCDIWEDAAIAFGFNNIEWTEPAVSTSGKQQPINKLADQLRRLLVEANYTEALTFALCKHDDNFas 768
Cdd:CHL00192 354 EVLIPSYRKdDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESFS-- 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 769 lrrpddgKTAAVISNPKTQDFQVCRSNLLSGLLRTVHSNLRMP-LPIKVFEVSDVVLLNpaaetgASNHRRLAAVQAGKS 847
Cdd:CHL00192 432 -------KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGnSTLEGFEIGHVFNLD------SSSIIEETELAGGIF 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 848 AG----------------FEAvQGLLDLVMQMLEVPRddQLALKPDGRaytlrpsQDPAFFGQLGAADIIFRGARVGVLG 911
Cdd:CHL00192 499 GGidirsswsekaqslnwFEA-KGIIENFFQKLNLPI--YWKKYSDLD-------EKINFHPYCTSEIFLSNGQKIGIFG 568
|
410 420
....*....|....*....|....
gi 167524996 912 VVHPEVLANYNLKLAASALELELE 935
Cdd:CHL00192 569 QLHPLLANKLNLNTEIYLFEINLD 592
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
644-716 |
1.45e-09 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 54.81 E-value: 1.45e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167524996 644 RTTSVQAEDIYRRMGIKreqADPAKLAELLTRMQLTSSLDADqkTISVQVPPTRADVLHPCDIWEDAAIAFGF 716
Cdd:smart00874 1 RTITLRLERINRLLGLE---ILAEEIEEILKRLGFEVEVSGD--TLEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| B3/B4 |
COG3382 |
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ... |
488-632 |
7.01e-07 |
|
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];
Pssm-ID: 442609 [Multi-domain] Cd Length: 233 Bit Score: 51.39 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 488 RTLVAIGTHDLDTIKGPFTYDAQKPEDVvFKPLrvpdafelkeyNAKElltmyqqdlqlkqylhilEKEPL--IPVIRDA 565
Cdd:COG3382 111 RYLLPIGGYDLDKIEGDLRLRLARGGES-FLPI-----------GGDE------------------EEPPEpgEVVYADD 160
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 167524996 566 NGVVLSMPPIINGDHSRISTATKNIFI------ECTATDLTKAkivLDIIVTMFSEHC-AEPFTIEPVNVVNPD 632
Cdd:COG3382 161 EGVFCRRWPWRDSERTKVTEETKNALFiieglpGVSAEDLEAA---LDELAELLERYLgGEVVKTRILDADNPE 231
|
|
| PTZ00008 |
PTZ00008 |
(NAP-S) nucleosome assembly protein-S; Provisional |
63-248 |
4.58e-04 |
|
(NAP-S) nucleosome assembly protein-S; Provisional
Pssm-ID: 185394 Cd Length: 185 Bit Score: 42.11 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 63 KFWFACLCNNPQISQLIMEhDEAVLEYLTDI--------SGEYKepgltgFTLTFTFRENPYFTNTTISKTYNLAPGPEE 134
Cdd:PTZ00008 38 GFWADTLRRHPALSYLVPE-DIDILEHLKKIdlednldnNGSYK------ITLIFDEKAKEFMEPLVLVKHVIFKNNQEK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167524996 135 DDELEyngpifqsavadPINWKEGMDVTVksVTKKQRKKtgknkgdtrtVTKSVPQESFFHFFTppqlnpeeasEEEIQT 214
Cdd:PTZ00008 111 VVEVT------------KIKWKEGKSPIA--AAEKARSD----------LDDECIVWSIFEWFT----------EEEWQD 156
|
170 180 190
....*....|....*....|....*....|....
gi 167524996 215 AAEllntdylIGEVFLNDIIPKAVLWYTGEAEFS 248
Cdd:PTZ00008 157 RPD-------VGEIIRREIWHAPLLYYLDTVSID 183
|
|
| |
