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Conserved domains on  [gi|145495202|ref|XP_001433594|]
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uncharacterized protein GSPATT00035326001 [Paramecium tetraurelia]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 18523261)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  18925368|10322433|8090199|30069656|29026209
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
191-521 3.88e-130

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 387.34  E-value: 3.88e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 191 WKNIKITEQNKKDTNNITVNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDK 270
Cdd:COG2319   63 LDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADG 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 271 SIRLWDFNTMQQKAKLDC-QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASC 349
Cdd:COG2319  143 TVRLWDLATGKLLRTLTGhSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASG 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 350 SGDKSIRLWNIKTGQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTV 429
Cdd:COG2319  223 SADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKL 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 430 LASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQSDTK---------KVCFSR 500
Cdd:COG2319  303 LASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTltghtgavtSVAFSP 382

                        330       340
                 ....*....|....*....|.
gi 145495202 501 DGTTLAFESHDQPMSFWDVKS 521
Cdd:COG2319  383 DGRTLASGSADGTVRLWDLAT 403
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-205 3.50e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 47.63  E-value: 3.50e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145495202 139 VNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTN 205
Cdd:COG1357   97 ANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
191-521 3.88e-130

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 387.34  E-value: 3.88e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 191 WKNIKITEQNKKDTNNITVNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDK 270
Cdd:COG2319   63 LDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADG 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 271 SIRLWDFNTMQQKAKLDC-QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASC 349
Cdd:COG2319  143 TVRLWDLATGKLLRTLTGhSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASG 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 350 SGDKSIRLWNIKTGQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTV 429
Cdd:COG2319  223 SADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKL 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 430 LASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQSDTK---------KVCFSR 500
Cdd:COG2319  303 LASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTltghtgavtSVAFSP 382

                        330       340
                 ....*....|....*....|.
gi 145495202 501 DGTTLAFESHDQPMSFWDVKS 521
Cdd:COG2319  383 DGRTLASGSADGTVRLWDLAT 403
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 209-485 6.34e-104

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 315.81  E-value: 6.34e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 209 VNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAKLDC 288
Cdd:cd00200   12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 289 -QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQKV 367
Cdd:cd00200   92 hTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 368 KLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTK 447
Cdd:cd00200  172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 145495202 448 QLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWD 485
Cdd:cd00200  252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 235-444 5.28e-14

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 75.12  E-value: 5.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 235 VKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAK--------LDCQDYVYTICF-SHDGTTLA 305
Cdd:PLN00181 470 VKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRdihypvveLASRSKLSGICWnSYIKSQVA 549

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 306 SGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCF-SPDGTTLASCSGDKSIRLWNIKTGQQ----KVKLDghqeyVYSVC 380
Cdd:PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYsSADPTLLASGSDDGSVKLWSINQGVSigtiKTKAN-----ICCVQ 624

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 381 FSPD-GSKLASGSGDNTINLWDFQTGQQK-DQLNGHTDYVYSVCFSpDGTVLASSSGDSSICLWDV 444
Cdd:PLN00181 625 FPSEsGRSLAFGSADHKVYYYDLRNPKLPlCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 237-276 1.73e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 56.17  E-value: 1.73e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   237 TGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWD 276
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
447-485 1.35e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 53.50  E-value: 1.35e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  447 KQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWD 485
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-205 3.50e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 47.63  E-value: 3.50e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145495202 139 VNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTN 205
Cdd:COG1357   97 ANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 145-183 6.06e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.70  E-value: 6.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  145 NLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNG 183
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
191-521 3.88e-130

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 387.34  E-value: 3.88e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 191 WKNIKITEQNKKDTNNITVNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDK 270
Cdd:COG2319   63 LDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADG 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 271 SIRLWDFNTMQQKAKLDC-QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASC 349
Cdd:COG2319  143 TVRLWDLATGKLLRTLTGhSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASG 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 350 SGDKSIRLWNIKTGQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTV 429
Cdd:COG2319  223 SADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKL 302

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 430 LASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQSDTK---------KVCFSR 500
Cdd:COG2319  303 LASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTltghtgavtSVAFSP 382

                        330       340
                 ....*....|....*....|.
gi 145495202 501 DGTTLAFESHDQPMSFWDVKS 521
Cdd:COG2319  383 DGRTLASGSADGTVRLWDLAT 403
WD40 COG2319
WD40 repeat [General function prediction only];
208-527 2.62e-120

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 362.31  E-value: 2.62e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 208 TVNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAKLD 287
Cdd:COG2319   38 AVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLT 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 288 C-QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQK 366
Cdd:COG2319  118 GhTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 367 VKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRT 446
Cdd:COG2319  198 RTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLAT 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 447 KQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQ---------SDTKKVCFSRDGTTLAFESHDQPMSFW 517
Cdd:COG2319  278 GELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKllrtltghtGAVRSVAFSPDGKTLASGSDDGTVRLW 357

                        330
                 ....*....|
gi 145495202 518 DVKSGQQIRP 527
Cdd:COG2319  358 DLATGELLRT 367
WD40 COG2319
WD40 repeat [General function prediction only];
214-526 1.05e-105

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 324.56  E-value: 1.05e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 214 FSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAKLDC-QDYV 292
Cdd:COG2319    2 LSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGhTAAV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 293 YTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQKVKLDGH 372
Cdd:COG2319   82 LSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGH 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 373 QEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTKQLKAK 452
Cdd:COG2319  162 SGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 453 LDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQSDTKK---------VCFSRDGTTLAFESHDQPMSFWDVKSGQ 523
Cdd:COG2319  242 LTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLtghsggvnsVAFSPDGKLLASGSDDGTVRLWDLATGK 321


                 ...
gi 145495202 524 QIR 526
Cdd:COG2319  322 LLR 324
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 209-485 6.34e-104

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 315.81  E-value: 6.34e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 209 VNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAKLDC 288
Cdd:cd00200   12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 289 -QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQKV 367
Cdd:cd00200   92 hTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 368 KLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTK 447
Cdd:cd00200  172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 145495202 448 QLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWD 485
Cdd:cd00200  252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 290-526 9.25e-75

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 240.31  E-value: 9.25e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 290 DYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQKVKL 369
Cdd:cd00200   10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 370 DGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTKQL 449
Cdd:cd00200   90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 450 KAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWDVKERQ------SDTKKVC---FSRDGTTLAFESHDQPMSFWDVK 520
Cdd:cd00200  170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKclgtlrGHENGVNsvaFSPDGYLLASGSEDGTIRVWDLR 249


                 ....*.
gi 145495202 521 SGQQIR 526
Cdd:cd00200  250 TGECVQ 255
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 323-525 3.84e-60

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 201.79  E-value: 3.84e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 323 LKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWDF 402
Cdd:cd00200    1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 403 QTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIR 482
Cdd:cd00200   81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 145495202 483 LWDVKE---------RQSDTKKVCFSRDGTTLAFESHDQPMSFWDVKSGQQI 525
Cdd:cd00200  161 LWDLRTgkcvatltgHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 208-359 3.18e-50

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 175.60  E-value: 3.18e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 208 TVNSVCFSADGTTLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAKLD 287
Cdd:cd00200  137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145495202 288 -CQDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWN 359
Cdd:cd00200  217 gHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 235-444 5.28e-14

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 75.12  E-value: 5.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 235 VKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWDFNTMQQKAK--------LDCQDYVYTICF-SHDGTTLA 305
Cdd:PLN00181 470 VKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRdihypvveLASRSKLSGICWnSYIKSQVA 549

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 306 SGSGDNSIRLWDVKTEQLKAKLDGHQEYVYTVCF-SPDGTTLASCSGDKSIRLWNIKTGQQ----KVKLDghqeyVYSVC 380
Cdd:PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYsSADPTLLASGSDDGSVKLWSINQGVSigtiKTKAN-----ICCVQ 624

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 381 FSPD-GSKLASGSGDNTINLWDFQTGQQK-DQLNGHTDYVYSVCFSpDGTVLASSSGDSSICLWDV 444
Cdd:PLN00181 625 FPSEsGRSLAFGSADHKVYYYDLRNPKLPlCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689
PTZ00421 PTZ00421
coronin; Provisional
 329-491 9.30e-13

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 70.69  E-value: 9.30e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 329 GHQEYVYTVCFSP-DGTTLASCSGDKSIRLWNIKT-GQQK------VKLDGHQEYVYSVCFSPDGSK-LASGSGDNTINL 399
Cdd:PTZ00421  73 GQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIPEeGLTQnisdpiVHLQGHTKKVGIVSFHPSAMNvLASAGADMVVNV 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 400 WDFQTGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVC-FSPDGTTLASGGFD 478
Cdd:PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRClWAKRKDLIITLGCS 232

                        170
                 ....*....|....*..
gi 145495202 479 CS----IRLWDVKERQS 491
Cdd:PTZ00421 233 KSqqrqIMLWDTRKMAS 249
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 280-486 6.02e-12

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 68.57  E-value: 6.02e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 280 MQQKAKLDCQDYVYTICFSHDGTTLASGSGDNSIRLWDVKTeQLKAKLDGHQEYV--------YTVCF-SPDGTTLASCS 350
Cdd:PLN00181 474 LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECES-IIKDGRDIHYPVVelasrsklSGICWnSYIKSQVASSN 552

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 351 GDKSIRLWNIKTGQQKVKLDGHQEYVYSVCFSP-DGSKLASGSGDNTINLWDFQTGQQKDQLNGHTDyVYSVCFSPD-GT 428
Cdd:PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSEsGR 631

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 145495202 429 VLASSSGDSSICLWDVRTKQLK-AKLDGHSSGILSVCFSpDGTTLASGGFDCSIRLWDV 486
Cdd:PLN00181 632 SLAFGSADHKVYYYDLRNPKLPlCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 305-448 4.73e-11

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 61.23  E-value: 4.73e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 305 ASGSGDNSIRLWDVKTEQLKaKLDGHQEYVYTVCFSPDGTTLASCS---GDKSIRLWNIKTGQQKvKLDGHQEYVYSVCF 381
Cdd:COG0823    5 LSRDGNSDIYVVDLDGGEPR-RLTNSPGIDTSPAWSPDGRRIAFTSdrgGGPQIYVVDADGGEPR-RLTFGGGYNASPSW 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145495202 382 SPDGSKLA-SGSGDNTINLW--DFQTGQQKdQLnghTDYVYSVCFSPDGTVLA---SSSGDSSICLWDVRTKQ 448
Cdd:COG0823   83 SPDGKRLAfVSRSDGRFDIYvlDLDGGAPR-RL---TDGPGSPSWSPDGRRIVfssDRGGRPDLYVVDLDGRK 151
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 237-276 1.73e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 56.17  E-value: 1.73e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   237 TGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWD 276
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 446-485 2.39e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 55.78  E-value: 2.39e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   446 TKQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWD 485
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 362-401 4.21e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 55.01  E-value: 4.21e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   362 TGQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWD 401
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 404-443 4.78e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 55.01  E-value: 4.78e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   404 TGQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWD 443
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 320-359 9.38e-10

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 54.24  E-value: 9.38e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 145495202   320 TEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWN 359
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
447-485 1.35e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 53.50  E-value: 1.35e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  447 KQLKAKLDGHSSGILSVCFSPDGTTLASGGFDCSIRLWD 485
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 pfam00400
WD domain, G-beta repeat;
238-276 1.37e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 53.50  E-value: 1.37e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  238 GQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWD 276
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 351-473 1.67e-09

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 56.99  E-value: 1.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 351 GDKSIRLWNIKTGQQKvKLDGHQEYVYSVCFSPDGSKLA---SGSGDNTINLWDFQTGQQKdQLNGHTDYVYSVCFSPDG 427
Cdd:COG0823    9 GNSDIYVVDLDGGEPR-RLTNSPGIDTSPAWSPDGRRIAftsDRGGGPQIYVVDADGGEPR-RLTFGGGYNASPSWSPDG 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 145495202 428 TVLASSS---GDSSICLWDVRTKQLKAkldgHSSGILSVCFSPDGTTLA 473
Cdd:COG0823   87 KRLAFVSrsdGRFDIYVLDLDGGAPRR----LTDGPGSPSWSPDGRRIV 131
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 318-519 2.30e-09

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 60.49  E-value: 2.30e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 318 VKTEQLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWN----IKTGQQ----KVKLDGHQEyVYSVCF-SPDGSKL 388
Cdd:PLN00181 470 VKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFEcesiIKDGRDihypVVELASRSK-LSGICWnSYIKSQV 548

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 389 ASGSGDNTINLWDFQTGQQKDQLNGHTDYVYSVCFSP-DGTVLASSSGDSSICLWD----VRTKQLKAKldghsSGILSV 463
Cdd:PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSinqgVSIGTIKTK-----ANICCV 623

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 464 CFSPD-GTTLASGGFDCSIRLWDVKERQ-------SDTKKVCFSR--DGTTLAFESHDQPMSFWDV 519
Cdd:PLN00181 624 QFPSEsGRSLAFGSADHKVYYYDLRNPKlplctmiGHSKTVSYVRfvDSSTLVSSSTDNTLKLWDL 689
WD40 pfam00400
WD domain, G-beta repeat;
405-443 4.30e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 52.35  E-value: 4.30e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  405 GQQKDQLNGHTDYVYSVCFSPDGTVLASSSGDSSICLWD 443
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 pfam00400
WD domain, G-beta repeat;
363-401 4.30e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 52.35  E-value: 4.30e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  363 GQQKVKLDGHQEYVYSVCFSPDGSKLASGSGDNTINLWD 401
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 339-469 4.87e-09

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 59.67  E-value: 4.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202  339 FSPDGTTLASCSgDKS--IRLW--NIKTGQQKVKL-DGHQEYVYSVCFSPDGSKLASGSGDNTINLWDFQTGQQK--DQl 411
Cdd:COG4946   350 WSPDGKSIAYFS-DASgeYELYiaPADGSGEPKQLtLGDLGRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKVRkvDT- 427

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 145495202  412 NGHTDYVYSVCFSPDGTVLA-SSSGD---SSICLWDVRTKQLKAKLDGHSSGIlSVCFSPDG 469
Cdd:COG4946   428 DGYGDGISDLAWSPDSKWLAySKPGPnqlSQIFLYDVETGKTVQLTDGRYDDG-SPAFSPDG 488
WD40 pfam00400
WD domain, G-beta repeat;
322-359 7.80e-09

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 51.58  E-value: 7.80e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 145495202  322 QLKAKLDGHQEYVYTVCFSPDGTTLASCSGDKSIRLWN 359
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 389-509 1.05e-08

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 54.68  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 389 ASGSGDNTINLWDFQTGQQKdQLNGHTDYVYSVCFSPDGTVLA---SSSGDSSICLWDVRTKQLKaKLDGHSSGILSVCF 465
Cdd:COG0823    5 LSRDGNSDIYVVDLDGGEPR-RLTNSPGIDTSPAWSPDGRRIAftsDRGGGPQIYVVDADGGEPR-RLTFGGGYNASPSW 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 145495202 466 SPDGTTLA-----SGGFDcsIRLWDV---KERQ--SDTKKVCFSRDGTTLAFES 509
Cdd:COG0823   83 SPDGKRLAfvsrsDGRFD--IYVLDLdggAPRRltDGPGSPSWSPDGRRIVFSS 134
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 230-367 4.67e-08

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 52.75  E-value: 4.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 230 IRLWDVKTGQQKALLDGHCDSVlSVCFSPDGTTLA---SGSGDKSIRLWDFNTMQQKAKLDCQDYVYTICFSHDGTTLA- 305
Cdd:COG0823   13 IYVVDLDGGEPRRLTNSPGIDT-SPAWSPDGRRIAftsDRGGGPQIYVVDADGGEPRRLTFGGGYNASPSWSPDGKRLAf 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145495202 306 --SGSGDNSIRLWDVKTEQLKAKLDGHQEYVytvcFSPDGTTLA---SCSGDKSIRLWNIKTGQQKV 367
Cdd:COG0823   92 vsRSDGRFDIYVLDLDGGAPRRLTDGPGSPS----WSPDGRRIVfssDRGGRPDLYVVDLDGRKRRL 154
PTZ00420 PTZ00420
coronin; Provisional
 326-491 5.25e-08

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 55.73  E-value: 5.25e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 326 KLDGHQEYVYTVCFSP-DGTTLASCSGDKSIRLWNIKTGQQKVK--------LDGHQEYVYSVCFSPDGSKLASGSG-DN 395
Cdd:PTZ00420  69 KLKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIPHNDESVKeikdpqciLKGHKKKISIIDWNPMNYYIMCSSGfDS 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 396 TINLWDFQTGQQKDQLNgHTDYVYSVCFSPDGTVLASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCFSPDG-----T 470
Cdd:PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGlggddN 227

                        170       180
                 ....*....|....*....|....*
gi 145495202 471 TLASGGFDCS----IRLWDVKERQS 491
Cdd:PTZ00420 228 YILSTGFSKNnmreMKLWDLKNTTS 252
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 253-389 1.21e-06

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 51.58  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202  253 SVCFSPDGTTLASGSgDKS--IRLW--DFNTMQQKAKLDCQD--YVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKaK 326
Cdd:COG4946   347 LPAWSPDGKSIAYFS-DASgeYELYiaPADGSGEPKQLTLGDlgRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKVR-K 424

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 145495202  327 LD--GHQEYVYTVCFSPDGTTLA-SCSGD---KSIRLWNIKTGqQKVKLDGHQEYVYSVCFSPDGSKLA 389
Cdd:COG4946   425 VDtdGYGDGISDLAWSPDSKWLAySKPGPnqlSQIFLYDVETG-KTVQLTDGRYDDGSPAFSPDGKYLY 492
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 215-439 1.29e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 51.63  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 215 SADGTTLASGTIDQYIRLWDVKTGqqkalldghcdsvLSVcfspdgttlasgsgdksirlwdfNTMQQKAKLDCQDYVyt 294
Cdd:PLN00181 585 SADPTLLASGSDDGSVKLWSINQG-------------VSI-----------------------GTIKTKANICCVQFP-- 626

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 295 icfSHDGTTLASGSGDNSIRLWDVKTEQLK-AKLDGHQEYVYTVCFSpDGTTLASCSGDKSIRLWNIK---TGQQKVKLD 370
Cdd:PLN00181 627 ---SESGRSLAFGSADHKVYYYDLRNPKLPlCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSmsiSGINETPLH 702

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 371 ---GHQEYVYSVCFSPDGSKLASGSGDNTINLWD-----------FQTGQQKDQL--NGHTDYVYSVCFSPDGTVL--AS 432
Cdd:PLN00181 703 sfmGHTNVKNFVGLSVSDGYIATGSETNEVFVYHkafpmpvlsykFKTIDPVSGLevDDASQFISSVCWRGQSSTLvaAN 782


                 ....*..
gi 145495202 433 SSGDSSI 439
Cdd:PLN00181 783 STGNIKI 789
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 430-538 1.45e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 51.24  E-value: 1.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 430 LASSSGDSSICLWDVRTKQLKAKLDGHSSGILSVCF-SPDGTTLASGGFDCSIRLWDVKERQS----DTK-KVCF----S 499
Cdd:PLN00181 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYsSADPTLLASGSDDGSVKLWSINQGVSigtiKTKaNICCvqfpS 627

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 145495202 500 RDGTTLAFESHDQPMSFWDVKSGQQIRPSDIRHKEISAY 538
Cdd:PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 289-317 2.19e-06

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 44.61  E-value: 2.19e-06
                           10        20
                   ....*....|....*....|....*....
gi 145495202   289 QDYVYTICFSHDGTTLASGSGDNSIRLWD 317
Cdd:smart00320  12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-205 3.50e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 47.63  E-value: 3.50e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145495202 139 VNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTN 205
Cdd:COG1357   97 ANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163
WD40 pfam00400
WD domain, G-beta repeat;
289-317 9.06e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 42.72  E-value: 9.06e-06
                          10        20
                  ....*....|....*....|....*....
gi 145495202  289 QDYVYTICFSHDGTTLASGSGDNSIRLWD 317
Cdd:pfam00400  11 TGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 297-427 1.38e-05

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 48.50  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202  297 FSHDGTTLA-----SGSgDNsirLW------DVKTEQLKAKLDGhqeYVYTVCFSPDGTTLASCSGDKSIRLWNIKTGQ- 364
Cdd:COG4946   350 WSPDGKSIAyfsdaSGE-YE---LYiapadgSGEPKQLTLGDLG---RVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKv 422

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145495202  365 QKVKLDGHQEYVYSVCFSPDGSKLA-SGSGDNT---INLWDFQTGQQKDQLNGHTDyVYSVCFSPDG 427
Cdd:COG4946   423 RKVDTDGYGDGISDLAWSPDSKWLAySKPGPNQlsqIFLYDVETGKTVQLTDGRYD-DGSPAFSPDG 488
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
140-205 1.99e-05

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 45.32  E-value: 1.99e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 140 NMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTN 205
Cdd:COG1357  103 NLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGAN 168
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-194 7.69e-05

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 43.78  E-value: 7.69e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 139 VNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNI 194
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLANL 89
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
132-200 9.81e-05

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 43.39  E-value: 9.81e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 145495202 132 NLLIEMKVNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQN 200
Cdd:COG1357   85 NLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGAD 153
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
138-188 1.66e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 42.62  E-value: 1.66e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 145495202 138 KVNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFN 188
Cdd:COG1357   38 GANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLAN 88
WD40 pfam00400
WD domain, G-beta repeat;
208-234 2.48e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 38.87  E-value: 2.48e-04
                          10        20
                  ....*....|....*....|....*..
gi 145495202  208 TVNSVCFSADGTTLASGTIDQYIRLWD 234
Cdd:pfam00400  13 SVTSLAFSPDGKLLASGSDDGTVKVWD 39
PTZ00421 PTZ00421
coronin; Provisional
 215-276 2.91e-04

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 43.73  E-value: 2.91e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 145495202 215 SADGTtLASGTIDQYIRLWDVKTGQQKALLDGHCDSVLSVCFSPDGTTLASGSGDKSIRLWD 276
Cdd:PTZ00421 136 SAMNV-LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-215 2.97e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 41.85  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 139 VNMKEHNLEKIRIRDT----SLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTNNITVNSVCF 214
Cdd:COG1357   15 ADLSGADLSGANLSGAlsgaNLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLANLSGANL 94


                 .
gi 145495202 215 S 215
Cdd:COG1357   95 S 95
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 209-234 3.45e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 38.45  E-value: 3.45e-04
                           10        20
                   ....*....|....*....|....*.
gi 145495202   209 VNSVCFSADGTTLASGTIDQYIRLWD 234
Cdd:smart00320  15 VTSVAFSPDGKYLASGSDDGTIKLWD 40
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
139-186 5.99e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 41.08  E-value: 5.99e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 145495202 139 VNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQL 186
Cdd:COG1357  117 ADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANL 164
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 145-183 6.06e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.70  E-value: 6.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145495202  145 NLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNG 183
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 343-473 6.31e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 43.10  E-value: 6.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202  343 GTTLA-SCSGDksirLWniktgqqKVKLDG--------HQEYVYSVCFSPDGSKLA-SGSGDNTINLW--DFQTGQQKdQ 410
Cdd:COG4946    32 GDTIVfVYAGD----LW-------TVPADGgrarrltsHPGYESFPRFSPDGKWIAfTSDYDGNTDVYvmPAEGGEPK-R 99

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145495202  411 L--NGHTDYVYSvcFSPDG-TVLASSSGDSsiclWDVRTKQLKA-KLDGHSSGILS------VCFSPDGTTLA 473
Cdd:COG4946   100 LtyHPANDRVVG--WTPDGkSVLFASNRGS----PPSRSNQLYTvPVDGGLPERLPlppagdGSFSPDGKKLA 166
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 152-186 7.45e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.32  E-value: 7.45e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 145495202  152 RDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQL 186
Cdd:pfam00805   4 SGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
PTZ00421 PTZ00421
coronin; Provisional
 418-522 8.95e-04

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 42.19  E-value: 8.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 418 VYSVCFSP-DGTVLASSSGDSSICLWDVRTKQLKA-------KLDGHSS--GILSvcFSPDGT-TLASGGFDCSIRLWDV 486
Cdd:PTZ00421  78 IIDVAFNPfDPQKLFTASEDGTIMGWGIPEEGLTQnisdpivHLQGHTKkvGIVS--FHPSAMnVLASAGADMVVNVWDV 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 145495202 487 KERQSDTKKVCFSR---------DGTTLAFESHDQPMSFWDVKSG 522
Cdd:PTZ00421 156 ERGKAVEVIKCHSDqitslewnlDGSLLCTTSKDKKLNIIDPRDG 200
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
138-200 9.73e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 40.31  E-value: 9.73e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145495202 138 KVNMKEHNLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIKITEQN 200
Cdd:COG1357  106 GANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGAN 168
tolB PRK01029
Tol-Pal system protein TolB;
339-452 1.48e-03

Tol-Pal system protein TolB;


Pssm-ID: 234889 [Multi-domain]  Cd Length: 428  Bit Score: 41.29  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 339 FSPDGTTLASCSG-DKSIRLW--NIKTGQQKVKLDGhQEYVYSVC--FSPDGSKLASGS---GDNTINLWDFQTGQQKdQ 410
Cdd:PRK01029 288 FSPDGTRLVFVSNkDGRPRIYimQIDPEGQSPRLLT-KKYRNSSCpaWSPDGKKIAFCSvikGVRQICVYDLATGRDY-Q 365

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 145495202 411 LNGHTDYVYSVCFSPDGTVLASSSGDSSIC-LWDVRTKQLKAK 452
Cdd:PRK01029 366 LTTSPENKESPSWAIDSLHLVYSAGNSNESeLYLISLITKKTR 408
PTZ00421 PTZ00421
coronin; Provisional
 217-331 2.85e-03

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 40.65  E-value: 2.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 217 DGTTLASGTIDQYIRLWDVKT-GQQKALLD------GHCDSVLSVCFSPDGT-TLASGSGDKSIRLWDFNTMQQKAKLDC 288
Cdd:PTZ00421  87 DPQKLFTASEDGTIMGWGIPEeGLTQNISDpivhlqGHTKKVGIVSFHPSAMnVLASAGADMVVNVWDVERGKAVEVIKC 166

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 145495202 289 -QDYVYTICFSHDGTTLASGSGDNSIRLWDVKTEQLKAKLDGHQ 331
Cdd:PTZ00421 167 hSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 173-322 3.72e-03

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 38.50  E-value: 3.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 173 NVDISGMNLNGAQLfnckwknIKITEQNKKDTnnitvnSVCFSADGTTLA-----SGTIDqyIRLWDVKTGQQKALLDGH 247
Cdd:COG0823   10 NSDIYVVDLDGGEP-------RRLTNSPGIDT------SPAWSPDGRRIAftsdrGGGPQ--IYVVDADGGEPRRLTFGG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 248 CDSVlSVCFSPDGTTLA---SGSGDKSIRLWDFNTMQQKAkLdcQDYVYTICFSHDGTTLA---SGSGDNSIRLWDVKTE 321
Cdd:COG0823   75 GYNA-SPSWSPDGKRLAfvsRSDGRFDIYVLDLDGGAPRR-L--TDGPGSPSWSPDGRRIVfssDRGGRPDLYVVDLDGR 150


                 .
gi 145495202 322 Q 322
Cdd:COG0823  151 K 151
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
140-205 3.83e-03

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 38.77  E-value: 3.83e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 145495202 140 NMKEHNLEKIRIRDTSLIGANMVRCNLnESTFQNVDISGMNLNGAQLFNCKWKNIKITEQNKKDTN 205
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANL-SGALSGANLSGANLSGANLTGANLSGADLSGADLSGAN 65
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
145-195 5.46e-03

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 38.38  E-value: 5.46e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 145495202 145 NLEKIRIRDTSLIGANMVRCNLNESTFQNVDISGMNLNGAQLFNCKWKNIK 195
Cdd:COG1357  128 NLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANLANLEGADLK 178
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 431-511 5.58e-03

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 37.73  E-value: 5.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145495202 431 ASSSGDSSICLWDVRTKQLKaKLDGHSSGILSVCFSPDGTTLA-----SGGFDcsirLWDVKERQSDTKKV--------- 496
Cdd:COG0823    5 LSRDGNSDIYVVDLDGGEPR-RLTNSPGIDTSPAWSPDGRRIAftsdrGGGPQ----IYVVDADGGEPRRLtfgggynas 79

                         90
                 ....*....|....*.
gi 145495202 497 -CFSRDGTTLAFESHD 511
Cdd:COG0823   80 pSWSPDGKRLAFVSRS 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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