NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2319650758|ref|XP_001324089|]
View 

MULE transposase domain-containing protein [Trichomonas vaginalis G3]

Protein Classification

transposase domain-containing protein( domain architecture ID 581115)

transposase domain-containing protein may bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803
PubMed:  12068970|20615441

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MULE super family cl48097
MULE transposase domain; This domain was identified by Babu and colleagues.
 75-166 1.96e-04

MULE transposase domain; This domain was identified by Babu and colleagues.


The actual alignment was detected with superfamily member pfam10551:

Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 40.33  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319650758  75 FIDATHSLLEFKMLFYMISAKFPNTHAFPIFQFVVYPNTSENIAFCLKAFFNWAKV----KPKYFMSDCAQEIENAIINS 150
Cdd:pfam10551   3 LIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDQLIAFRECmsglSPQVIITDRDKALKNAINLV 82

                          90
                  ....*....|....*.
gi 2319650758 151 FPEVILHWCAVHVMRA 166
Cdd:pfam10551  83 FPEAQHRLCIFHINKN 98
 
Name Accession Description Interval E-value
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 75-166 1.96e-04

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 40.33  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319650758  75 FIDATHSLLEFKMLFYMISAKFPNTHAFPIFQFVVYPNTSENIAFCLKAFFNWAKV----KPKYFMSDCAQEIENAIINS 150
Cdd:pfam10551   3 LIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDQLIAFRECmsglSPQVIITDRDKALKNAINLV 82

                          90
                  ....*....|....*.
gi 2319650758 151 FPEVILHWCAVHVMRA 166
Cdd:pfam10551  83 FPEAQHRLCIFHINKN 98
 
Name Accession Description Interval E-value
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 75-166 1.96e-04

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 40.33  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319650758  75 FIDATHSLLEFKMLFYMISAKFPNTHAFPIFQFVVYPNTSENIAFCLKAFFNWAKV----KPKYFMSDCAQEIENAIINS 150
Cdd:pfam10551   3 LIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFDQLIAFRECmsglSPQVIITDRDKALKNAINLV 82

                          90
                  ....*....|....*.
gi 2319650758 151 FPEVILHWCAVHVMRA 166
Cdd:pfam10551  83 FPEAQHRLCIFHINKN 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH