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Conserved domains on  [gi|2786557260|gb|XEC73899|]
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hypothetical protein RF1 (chloroplast) [Aster scaber]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1692 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1984.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYFFLLRAHIMEEGEEGTEKRVSATTGFITGQLIMFISIYYAPLHLAL 87
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260   88 GRPHTITVLALPYLLFHFFCNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIFMFRCNSKM 167
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  168 LFVTSSFVGWIIGHILFMKWIGLLLVWIRKNQYIR--KYIRSNKYLVSELKNSMsmAGIFSIFLFLTCVYYLGRIPSPIF 245
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRsnVLIRSNKYLVSELRNSM--ARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  246 SKKLNKLDKMEEEEEFNMEEEEEFDNNRRVDYMYGNQE------------------NLKFKILEK----NKKDEEKSFFL 303
Cdd:CHL00204   239 TKKLKETSETEERVESEEETDVEIETASETKGTKQEQEgsteedpspslfseeredPDKIDETEEirvnGKEKIKKDLFW 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  304 FEKPLLTFFFDYNRWNRPLRYIRkrNKNFKGSVRSEASQYFFYTCQSDGKQRISFTYPPSLSTFGEMIARRISLSTLEKL 383
Cdd:CHL00204   319 FEKPLVTLLFDYKRWNRPFRYIK--NDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKL 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  384 SADELYNEWLYTNKEKNNNLNNEFINRIETLETVFLSLNILETKTRLYNAETKnkknflvkfcntepknKNCLVKMYDPF 463
Cdd:CHL00204   397 SSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETK----------------KEYLPKIYDPF 460

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  464 LNGMYRGRMKKLFSSSIINETSIENCTETSELNQIHDILLPYPNSPEYPQKIER-------------------------- 517
Cdd:CHL00204   461 LNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTfnkkslsteinesltlinkfgaepks 540

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  518 ----------SEKKQVKIDSNNR---LKFSLNAILTNPKRE---KKSIGINKIGKKPPRWSYKLINELEQhfkkRRKEQG 581
Cdd:CHL00204   541 slnlkglslfSEPEQEKINSEEEikiFKFLFDAVITDPNDQtiiKKSIGIKEISKKVPRWSYKLIDELEQ----LEGENE 616

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  582 IMQGLDHQLRTRRFKRIAFLTRsrrsfKKSHFKNY-NLYTKFNRDS----GFISYLEESDFRRAVIKGSMRVQRRKMVIW 656
Cdd:CHL00204   617 ENVPSDHQIRSRKAKRVVIFTD-----NESNNDIYtNLKDNQNSDQkdevALIRYSQQSDFRRGIIKGSMRAQRRKTVIW 691

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  657 GPSQGNPHSPLFLEKMED---FPFPISNLMKLFFniRDWVGKKSEFEILD-----------------QHFQIKKNNQEDA 716
Cdd:CHL00204   692 ELFQANVHSPLFLDRIDKlffFSFDISGLMKKIF--RNWNGKDAEFKISDsveektkkkkkkekkkeEEYKREEKARIEI 769

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  717 MEFWDNIPYAQKTRSVLLLAQSIFRRYIKLPLFIIVKNIGRILLRQSPEWYEDFQDWNREIYLKCSYNGLQFSKTEFPKN 796
Cdd:CHL00204   770 AEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKN 849

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  797 WLREGFQIKILYPFHLKPWHRSKLRLSDSDR-----KQQDDFdsCFLTVLGMETEYPFGPPRKTPSFFEPIFKDIDYKV- 870
Cdd:CHL00204   850 WLTDGIQIKILFPFYLKPWHRSKLRSSHKDRmkkkkKKKNDF--CFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIr 927

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  871 EIRKFNFRVRRVFKKITK------KQTK-----AVLFVKQIIKELLKGTKIPLFIPREIYESSQTQTENDSIISNKIIHE 939
Cdd:CHL00204   928 KFKKKYFLVLKILKERTKlflkvsKETKkwiikSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKDSIISNQMIHE 1007

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  940 SLSQNRATGWTNYLQAKEEMKHRIDRRNTIRNQIEIMKKNKKNNG-----------------ESPPKNWKLLKRKNIELL 1002
Cdd:CHL00204  1008 SSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITntinispnktsydskiiESSKKIWQILKRRNTRLI 1087

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1003 ------IQFCIEKIYIDIFLCIINMRRITLYLFMESTKKIVEKYIDNNKRNQdqERINKTKQNKIDFISpmTIKKIFDNL 1076
Cdd:CHL00204  1088 rksyyfIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENK--EKINKKKQNTIHFIS--TIKKSLYNI 1163

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1077 RNSKRKSHIFFDLSYLSQKYVFFKLSQAQAINFNKVISILQYNGPSFFLKNEIKDFFGRQGIFDSEIRHKKLPNYGMNPW 1156
Cdd:CHL00204  1164 SNKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1157 KNWLRGHYQYDLSQIRWSRLVPQKWRNGIN---TSQNNDLKKWYSYEKDPFFDYKKKQNLKVYLLSNKEDNFEKNYRYDL 1233
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNqdrMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1234 LSYKYIHSETKKksclyrtsLERNKKQE---NSTRKKENFF---KNIPMKKFLGKSDIIYMEKKTDRKYLGWK-----FN 1302
Cdd:CHL00204  1324 LSYKSINYEDKK--------FQVNKNQEisyNYNTRKVNLFdmpEGIAINNYLGKGDILDIEKNPDRKYLDWRilnfsLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1303 TKIQVEP----------------NKDQIKDQFHIFYLPIDSnceMNYKRVFFDWMemsfdwmGMNEKflILNHLISNPKV 1366
Cdd:CHL00204  1396 KKVDIESwvdtdskskkntktgvNNYQIIDKIDHQDFENNQ---ANKKKNFFDWM-------GMNEE--ILNRPISNLEF 1463

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1367 FFFPEFVILYHKYKEKPWFIPSNLLFFNLNIKPNFSENQNSKAKQeqdynflnFSPANSKQYFELKKQN----------- 1435
Cdd:CHL00204  1464 WFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKKG--------FIPSNEKKSIEIENRNqeekepagqge 1535

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1436 --------------------NIEEYFLESIEK---------------LKIFLKGDFPLQLRWTgrlNQLNQKMMDNIQIY 1480
Cdd:CHL00204  1536 lesdkekkgnlesvlsnqekNIEEDYAESDIKkrknkkqyksnteaeLDFFLKRYLRFQLRWN---DFLNQRIINNIKVY 1612

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1481 GLLVSLINVRKITISYIQRKEINLDIM--RRRLNLTQLTKKGILIMEPARLSVKNDGQFFMYQIIGISLVHKSKHQSN-- 1556
Cdd:CHL00204  1613 CLLLRLINPREIAISSIQRGEMSLDIMmiQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINqr 1692

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1557 -RNPKNVAKKNFDESIPRHKIKTLNRDKKTSDLLVPEKILSSRRRRELRILISFNLnlKNQNGVHKNKLFCKENRLKNWS 1635
Cdd:CHL00204  1693 yREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNS--KNKNAVDRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2786557260 1636 QFLDESKNIDRKKNELIKLKFFFWPNYRLEDLACMNRYWFDTNNGSRLSMLRISMYP 1692
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1692 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1984.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYFFLLRAHIMEEGEEGTEKRVSATTGFITGQLIMFISIYYAPLHLAL 87
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260   88 GRPHTITVLALPYLLFHFFCNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIFMFRCNSKM 167
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  168 LFVTSSFVGWIIGHILFMKWIGLLLVWIRKNQYIR--KYIRSNKYLVSELKNSMsmAGIFSIFLFLTCVYYLGRIPSPIF 245
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRsnVLIRSNKYLVSELRNSM--ARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  246 SKKLNKLDKMEEEEEFNMEEEEEFDNNRRVDYMYGNQE------------------NLKFKILEK----NKKDEEKSFFL 303
Cdd:CHL00204   239 TKKLKETSETEERVESEEETDVEIETASETKGTKQEQEgsteedpspslfseeredPDKIDETEEirvnGKEKIKKDLFW 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  304 FEKPLLTFFFDYNRWNRPLRYIRkrNKNFKGSVRSEASQYFFYTCQSDGKQRISFTYPPSLSTFGEMIARRISLSTLEKL 383
Cdd:CHL00204   319 FEKPLVTLLFDYKRWNRPFRYIK--NDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKL 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  384 SADELYNEWLYTNKEKNNNLNNEFINRIETLETVFLSLNILETKTRLYNAETKnkknflvkfcntepknKNCLVKMYDPF 463
Cdd:CHL00204   397 SSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETK----------------KEYLPKIYDPF 460

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  464 LNGMYRGRMKKLFSSSIINETSIENCTETSELNQIHDILLPYPNSPEYPQKIER-------------------------- 517
Cdd:CHL00204   461 LNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTfnkkslsteinesltlinkfgaepks 540

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  518 ----------SEKKQVKIDSNNR---LKFSLNAILTNPKRE---KKSIGINKIGKKPPRWSYKLINELEQhfkkRRKEQG 581
Cdd:CHL00204   541 slnlkglslfSEPEQEKINSEEEikiFKFLFDAVITDPNDQtiiKKSIGIKEISKKVPRWSYKLIDELEQ----LEGENE 616

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  582 IMQGLDHQLRTRRFKRIAFLTRsrrsfKKSHFKNY-NLYTKFNRDS----GFISYLEESDFRRAVIKGSMRVQRRKMVIW 656
Cdd:CHL00204   617 ENVPSDHQIRSRKAKRVVIFTD-----NESNNDIYtNLKDNQNSDQkdevALIRYSQQSDFRRGIIKGSMRAQRRKTVIW 691

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  657 GPSQGNPHSPLFLEKMED---FPFPISNLMKLFFniRDWVGKKSEFEILD-----------------QHFQIKKNNQEDA 716
Cdd:CHL00204   692 ELFQANVHSPLFLDRIDKlffFSFDISGLMKKIF--RNWNGKDAEFKISDsveektkkkkkkekkkeEEYKREEKARIEI 769

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  717 MEFWDNIPYAQKTRSVLLLAQSIFRRYIKLPLFIIVKNIGRILLRQSPEWYEDFQDWNREIYLKCSYNGLQFSKTEFPKN 796
Cdd:CHL00204   770 AEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKN 849

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  797 WLREGFQIKILYPFHLKPWHRSKLRLSDSDR-----KQQDDFdsCFLTVLGMETEYPFGPPRKTPSFFEPIFKDIDYKV- 870
Cdd:CHL00204   850 WLTDGIQIKILFPFYLKPWHRSKLRSSHKDRmkkkkKKKNDF--CFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIr 927

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  871 EIRKFNFRVRRVFKKITK------KQTK-----AVLFVKQIIKELLKGTKIPLFIPREIYESSQTQTENDSIISNKIIHE 939
Cdd:CHL00204   928 KFKKKYFLVLKILKERTKlflkvsKETKkwiikSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKDSIISNQMIHE 1007

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  940 SLSQNRATGWTNYLQAKEEMKHRIDRRNTIRNQIEIMKKNKKNNG-----------------ESPPKNWKLLKRKNIELL 1002
Cdd:CHL00204  1008 SSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITntinispnktsydskiiESSKKIWQILKRRNTRLI 1087

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1003 ------IQFCIEKIYIDIFLCIINMRRITLYLFMESTKKIVEKYIDNNKRNQdqERINKTKQNKIDFISpmTIKKIFDNL 1076
Cdd:CHL00204  1088 rksyyfIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENK--EKINKKKQNTIHFIS--TIKKSLYNI 1163

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1077 RNSKRKSHIFFDLSYLSQKYVFFKLSQAQAINFNKVISILQYNGPSFFLKNEIKDFFGRQGIFDSEIRHKKLPNYGMNPW 1156
Cdd:CHL00204  1164 SNKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1157 KNWLRGHYQYDLSQIRWSRLVPQKWRNGIN---TSQNNDLKKWYSYEKDPFFDYKKKQNLKVYLLSNKEDNFEKNYRYDL 1233
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNqdrMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1234 LSYKYIHSETKKksclyrtsLERNKKQE---NSTRKKENFF---KNIPMKKFLGKSDIIYMEKKTDRKYLGWK-----FN 1302
Cdd:CHL00204  1324 LSYKSINYEDKK--------FQVNKNQEisyNYNTRKVNLFdmpEGIAINNYLGKGDILDIEKNPDRKYLDWRilnfsLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1303 TKIQVEP----------------NKDQIKDQFHIFYLPIDSnceMNYKRVFFDWMemsfdwmGMNEKflILNHLISNPKV 1366
Cdd:CHL00204  1396 KKVDIESwvdtdskskkntktgvNNYQIIDKIDHQDFENNQ---ANKKKNFFDWM-------GMNEE--ILNRPISNLEF 1463

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1367 FFFPEFVILYHKYKEKPWFIPSNLLFFNLNIKPNFSENQNSKAKQeqdynflnFSPANSKQYFELKKQN----------- 1435
Cdd:CHL00204  1464 WFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKKG--------FIPSNEKKSIEIENRNqeekepagqge 1535

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1436 --------------------NIEEYFLESIEK---------------LKIFLKGDFPLQLRWTgrlNQLNQKMMDNIQIY 1480
Cdd:CHL00204  1536 lesdkekkgnlesvlsnqekNIEEDYAESDIKkrknkkqyksnteaeLDFFLKRYLRFQLRWN---DFLNQRIINNIKVY 1612

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1481 GLLVSLINVRKITISYIQRKEINLDIM--RRRLNLTQLTKKGILIMEPARLSVKNDGQFFMYQIIGISLVHKSKHQSN-- 1556
Cdd:CHL00204  1613 CLLLRLINPREIAISSIQRGEMSLDIMmiQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINqr 1692

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1557 -RNPKNVAKKNFDESIPRHKIKTLNRDKKTSDLLVPEKILSSRRRRELRILISFNLnlKNQNGVHKNKLFCKENRLKNWS 1635
Cdd:CHL00204  1693 yREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNS--KNKNAVDRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2786557260 1636 QFLDESKNIDRKKNELIKLKFFFWPNYRLEDLACMNRYWFDTNNGSRLSMLRISMYP 1692
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-863 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 990.17  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260   22 VVVVGLYYGFLTTFSIGPSYFFLLRAHIMEEGEEGTEKRVSATTGFITGQLIMFISIYYAPLHLALGRPHTITVLALPYL 101
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  102 LFHFFCNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIFMFRCNSKMLFVTSSFVGWIIGH 181
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  182 ILFMKWIGLLLVWIRKNQYIR--KYIRSNKYLVSELKNSMsmAGIFSIFLFLTCVYYLGRIPSPIFSKKL---------- 249
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRsnVLIRSNKYLVSELRNSM--ARIFSILLFITCVYYLGRIPSPIFTKKLketseteery 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  250 -------------------------------------------NKLDKMEEEEEFNMEEEEEFDNNRRVDYMY------- 279
Cdd:pfam05758  239 eseeetdveiettsetkgtkqeqersteedpspslfseegedlDKIDETEEIRVNGKDKIKDEFHFHFRETCYknspiye 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  280 -----GNQENLKFKILEKnkKDEEKSFFLFEKPLLTFFFDYNRWNRPLRYIRkrNKNFKGSVRSEASQYFFYTCQSDGKQ 354
Cdd:pfam05758  319 tsyldGNQENSKLEILKE--KKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIK--NNRFENAVRNEMSQYFFYTCQSDGKE 394

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  355 RISFTYPPSLSTFGEMIARRISLSTLEKLSADELYNEWLYTNKEKNNNLNNEFINRIETLETVFLSLNILETKTRLYNAE 434
Cdd:pfam05758  395 RISFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDE 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  435 TKnkknflvkfcntepknKNCLVKMYDPFLNGMYRGRMKKLFSSSIINETSIENCTETSELNQIHDILLPYpNSPEYPQK 514
Cdd:pfam05758  475 TK----------------KEYLPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSS-NYPEFEQK 537

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  515 IER------------------------------------SEKKQVKIDSNNR---LKFSLNAILTNPKRE---KKSIGIN 552
Cdd:pfam05758  538 INIfdrkslsteidyflnlinefskksvsslnfkglslfPEQEQVKINSEEEkkiLKFLFDAVRTDSNEKtirKKSIGIK 617

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  553 KIGKKPPRWSYKLINELEQHFKKRRKEQGImqglDHQLRTRRFKRIAFLTRSRRSFKKSHFKNYNLYTKFNRDSGFISYL 632
Cdd:pfam05758  618 EINKKVPRWSYKLIDELEQLEGENEENVAE----DYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYS 693

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  633 EESDFRRAVIKGSMRVQRRKMVIWGPSQGNPHSPLFLEKMED---FPFPISNLMKLFFniRDWVGKKSEFEILD------ 703
Cdd:pfam05758  694 QQSDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKplfFSFDIFGLIKIIF--KNWMRKKEEFKISSyteekt 771

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  704 -QHFQIKKNNQEDAM----------EFWDNIPYAQKTRSVLLLAQSIFRRYIKLPLFIIVKNIGRILLRQSPEWYEDFQD 772
Cdd:pfam05758  772 kESSKKEEDKKEDNKreerarieiaEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKD 851

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  773 WNREIYLKCSYNGLQFSKTEFPKNWLREGFQIKILYPFHLKPWHRSKLRLSDSDR----KQQDDFdsCFLTVLGMETEYP 848
Cdd:pfam05758  852 WKREMHIKCTYNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLmkkkVQKNDF--CFLTVWGMETELP 929

                          970
                   ....*....|....*
gi 2786557260  849 FGPPRKTPSFFEPIF 863
Cdd:pfam05758  930 FGSPRKRPSFFEPIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1692 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1984.19  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYFFLLRAHIMEEGEEGTEKRVSATTGFITGQLIMFISIYYAPLHLAL 87
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260   88 GRPHTITVLALPYLLFHFFCNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIFMFRCNSKM 167
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  168 LFVTSSFVGWIIGHILFMKWIGLLLVWIRKNQYIR--KYIRSNKYLVSELKNSMsmAGIFSIFLFLTCVYYLGRIPSPIF 245
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRsnVLIRSNKYLVSELRNSM--ARIFSILLFITCVYYLGRIPSPIF 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  246 SKKLNKLDKMEEEEEFNMEEEEEFDNNRRVDYMYGNQE------------------NLKFKILEK----NKKDEEKSFFL 303
Cdd:CHL00204   239 TKKLKETSETEERVESEEETDVEIETASETKGTKQEQEgsteedpspslfseeredPDKIDETEEirvnGKEKIKKDLFW 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  304 FEKPLLTFFFDYNRWNRPLRYIRkrNKNFKGSVRSEASQYFFYTCQSDGKQRISFTYPPSLSTFGEMIARRISLSTLEKL 383
Cdd:CHL00204   319 FEKPLVTLLFDYKRWNRPFRYIK--NDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKL 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  384 SADELYNEWLYTNKEKNNNLNNEFINRIETLETVFLSLNILETKTRLYNAETKnkknflvkfcntepknKNCLVKMYDPF 463
Cdd:CHL00204   397 SSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETK----------------KEYLPKIYDPF 460

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  464 LNGMYRGRMKKLFSSSIINETSIENCTETSELNQIHDILLPYPNSPEYPQKIER-------------------------- 517
Cdd:CHL00204   461 LNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTfnkkslsteinesltlinkfgaepks 540

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  518 ----------SEKKQVKIDSNNR---LKFSLNAILTNPKRE---KKSIGINKIGKKPPRWSYKLINELEQhfkkRRKEQG 581
Cdd:CHL00204   541 slnlkglslfSEPEQEKINSEEEikiFKFLFDAVITDPNDQtiiKKSIGIKEISKKVPRWSYKLIDELEQ----LEGENE 616

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  582 IMQGLDHQLRTRRFKRIAFLTRsrrsfKKSHFKNY-NLYTKFNRDS----GFISYLEESDFRRAVIKGSMRVQRRKMVIW 656
Cdd:CHL00204   617 ENVPSDHQIRSRKAKRVVIFTD-----NESNNDIYtNLKDNQNSDQkdevALIRYSQQSDFRRGIIKGSMRAQRRKTVIW 691

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  657 GPSQGNPHSPLFLEKMED---FPFPISNLMKLFFniRDWVGKKSEFEILD-----------------QHFQIKKNNQEDA 716
Cdd:CHL00204   692 ELFQANVHSPLFLDRIDKlffFSFDISGLMKKIF--RNWNGKDAEFKISDsveektkkkkkkekkkeEEYKREEKARIEI 769

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  717 MEFWDNIPYAQKTRSVLLLAQSIFRRYIKLPLFIIVKNIGRILLRQSPEWYEDFQDWNREIYLKCSYNGLQFSKTEFPKN 796
Cdd:CHL00204   770 AEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKN 849

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  797 WLREGFQIKILYPFHLKPWHRSKLRLSDSDR-----KQQDDFdsCFLTVLGMETEYPFGPPRKTPSFFEPIFKDIDYKV- 870
Cdd:CHL00204   850 WLTDGIQIKILFPFYLKPWHRSKLRSSHKDRmkkkkKKKNDF--CFLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIr 927

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  871 EIRKFNFRVRRVFKKITK------KQTK-----AVLFVKQIIKELLKGTKIPLFIPREIYESSQTQTENDSIISNKIIHE 939
Cdd:CHL00204   928 KFKKKYFLVLKILKERTKlflkvsKETKkwiikSFLFLKRIIKELSKRNPILLFGLREIYELNETKKEKDSIISNQMIHE 1007

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  940 SLSQNRATGWTNYLQAKEEMKHRIDRRNTIRNQIEIMKKNKKNNG-----------------ESPPKNWKLLKRKNIELL 1002
Cdd:CHL00204  1008 SSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITntinispnktsydskiiESSKKIWQILKRRNTRLI 1087

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1003 ------IQFCIEKIYIDIFLCIINMRRITLYLFMESTKKIVEKYIDNNKRNQdqERINKTKQNKIDFISpmTIKKIFDNL 1076
Cdd:CHL00204  1088 rksyyfIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENK--EKINKKKQNTIHFIS--TIKKSLYNI 1163

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1077 RNSKRKSHIFFDLSYLSQKYVFFKLSQAQAINFNKVISILQYNGPSFFLKNEIKDFFGRQGIFDSEIRHKKLPNYGMNPW 1156
Cdd:CHL00204  1164 SNKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1157 KNWLRGHYQYDLSQIRWSRLVPQKWRNGIN---TSQNNDLKKWYSYEKDPFFDYKKKQNLKVYLLSNKEDNFEKNYRYDL 1233
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNqdrMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1234 LSYKYIHSETKKksclyrtsLERNKKQE---NSTRKKENFF---KNIPMKKFLGKSDIIYMEKKTDRKYLGWK-----FN 1302
Cdd:CHL00204  1324 LSYKSINYEDKK--------FQVNKNQEisyNYNTRKVNLFdmpEGIAINNYLGKGDILDIEKNPDRKYLDWRilnfsLR 1395

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1303 TKIQVEP----------------NKDQIKDQFHIFYLPIDSnceMNYKRVFFDWMemsfdwmGMNEKflILNHLISNPKV 1366
Cdd:CHL00204  1396 KKVDIESwvdtdskskkntktgvNNYQIIDKIDHQDFENNQ---ANKKKNFFDWM-------GMNEE--ILNRPISNLEF 1463

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1367 FFFPEFVILYHKYKEKPWFIPSNLLFFNLNIKPNFSENQNSKAKQeqdynflnFSPANSKQYFELKKQN----------- 1435
Cdd:CHL00204  1464 WFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKKG--------FIPSNEKKSIEIENRNqeekepagqge 1535

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1436 --------------------NIEEYFLESIEK---------------LKIFLKGDFPLQLRWTgrlNQLNQKMMDNIQIY 1480
Cdd:CHL00204  1536 lesdkekkgnlesvlsnqekNIEEDYAESDIKkrknkkqyksnteaeLDFFLKRYLRFQLRWN---DFLNQRIINNIKVY 1612

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1481 GLLVSLINVRKITISYIQRKEINLDIM--RRRLNLTQLTKKGILIMEPARLSVKNDGQFFMYQIIGISLVHKSKHQSN-- 1556
Cdd:CHL00204  1613 CLLLRLINPREIAISSIQRGEMSLDIMmiQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINqr 1692

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260 1557 -RNPKNVAKKNFDESIPRHKIKTLNRDKKTSDLLVPEKILSSRRRRELRILISFNLnlKNQNGVHKNKLFCKENRLKNWS 1635
Cdd:CHL00204  1693 yREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNS--KNKNAVDRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2786557260 1636 QFLDESKNIDRKKNELIKLKFFFWPNYRLEDLACMNRYWFDTNNGSRLSMLRISMYP 1692
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-863 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 990.17  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260   22 VVVVGLYYGFLTTFSIGPSYFFLLRAHIMEEGEEGTEKRVSATTGFITGQLIMFISIYYAPLHLALGRPHTITVLALPYL 101
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  102 LFHFFCNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIFMFRCNSKMLFVTSSFVGWIIGH 181
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  182 ILFMKWIGLLLVWIRKNQYIR--KYIRSNKYLVSELKNSMsmAGIFSIFLFLTCVYYLGRIPSPIFSKKL---------- 249
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRsnVLIRSNKYLVSELRNSM--ARIFSILLFITCVYYLGRIPSPIFTKKLketseteery 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  250 -------------------------------------------NKLDKMEEEEEFNMEEEEEFDNNRRVDYMY------- 279
Cdd:pfam05758  239 eseeetdveiettsetkgtkqeqersteedpspslfseegedlDKIDETEEIRVNGKDKIKDEFHFHFRETCYknspiye 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  280 -----GNQENLKFKILEKnkKDEEKSFFLFEKPLLTFFFDYNRWNRPLRYIRkrNKNFKGSVRSEASQYFFYTCQSDGKQ 354
Cdd:pfam05758  319 tsyldGNQENSKLEILKE--KKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIK--NNRFENAVRNEMSQYFFYTCQSDGKE 394

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  355 RISFTYPPSLSTFGEMIARRISLSTLEKLSADELYNEWLYTNKEKNNNLNNEFINRIETLETVFLSLNILETKTRLYNAE 434
Cdd:pfam05758  395 RISFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDE 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  435 TKnkknflvkfcntepknKNCLVKMYDPFLNGMYRGRMKKLFSSSIINETSIENCTETSELNQIHDILLPYpNSPEYPQK 514
Cdd:pfam05758  475 TK----------------KEYLPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSS-NYPEFEQK 537

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  515 IER------------------------------------SEKKQVKIDSNNR---LKFSLNAILTNPKRE---KKSIGIN 552
Cdd:pfam05758  538 INIfdrkslsteidyflnlinefskksvsslnfkglslfPEQEQVKINSEEEkkiLKFLFDAVRTDSNEKtirKKSIGIK 617

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  553 KIGKKPPRWSYKLINELEQHFKKRRKEQGImqglDHQLRTRRFKRIAFLTRSRRSFKKSHFKNYNLYTKFNRDSGFISYL 632
Cdd:pfam05758  618 EINKKVPRWSYKLIDELEQLEGENEENVAE----DYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYS 693

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  633 EESDFRRAVIKGSMRVQRRKMVIWGPSQGNPHSPLFLEKMED---FPFPISNLMKLFFniRDWVGKKSEFEILD------ 703
Cdd:pfam05758  694 QQSDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKplfFSFDIFGLIKIIF--KNWMRKKEEFKISSyteekt 771

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  704 -QHFQIKKNNQEDAM----------EFWDNIPYAQKTRSVLLLAQSIFRRYIKLPLFIIVKNIGRILLRQSPEWYEDFQD 772
Cdd:pfam05758  772 kESSKKEEDKKEDNKreerarieiaEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKD 851

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2786557260  773 WNREIYLKCSYNGLQFSKTEFPKNWLREGFQIKILYPFHLKPWHRSKLRLSDSDR----KQQDDFdsCFLTVLGMETEYP 848
Cdd:pfam05758  852 WKREMHIKCTYNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLmkkkVQKNDF--CFLTVWGMETELP 929

                          970
                   ....*....|....*
gi 2786557260  849 FGPPRKTPSFFEPIF 863
Cdd:pfam05758  930 FGSPRKRPSFFEPIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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