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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Salvia apiana]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
11-403
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 879.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 11 M IT P I TR N DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 90
Cdd:CHL00017 1 M TV P A TR K DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 91 ITVN G PEQLGNIQVPKRASYIR A IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 170
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 171 GGVAADLPYGW V DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG I GIIGGEEA L NWGLSGPMLRASGIQWDLRKVD R YE 250
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG V GIIGGEEA I NWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 251 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE S RRFDR I KD P EWNDFEYRFISKKPSPTFE 330
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2715572021 331 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 403
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
11-403
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 879.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 11 M IT P I TR N DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 90
Cdd:CHL00017 1 M TV P A TR K DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 91 ITVN G PEQLGNIQVPKRASYIR A IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 170
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 171 GGVAADLPYGW V DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG I GIIGGEEA L NWGLSGPMLRASGIQWDLRKVD R YE 250
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG V GIIGGEEA I NWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 251 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE S RRFDR I KD P EWNDFEYRFISKKPSPTFE 330
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2715572021 331 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 403
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
19-403
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 560.84
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 19 DL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP E Q 98
Cdd:COG0649 5 EE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 99 L GN I Q VP K RA S YIR A I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 178
Cdd:COG0649 85 L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 179 Y G WVD K CLD F C DYF LTGVA EY QK L I T R N P IF LE R VE G I G IIGG E E A LNW G LS GP M LRASG IQW DLRK VDR Y EC YDE F D WE 258
Cdd:COG0649 165 D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK G V G VLSA E D A IAL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 259 IQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP YENLESRRFDRI K DPEWNDF E YRFIS - K KPSPT F ELSKQ E L Y 337
Cdd:COG0649 245 VPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E V Y 324
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2715572021 338 VR VE A P K GELG IF L IG D QSVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 403
Cdd:COG0649 325 AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
19-403
2.69e-151
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 433.31
E-value: 2.69e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 19 DL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 98
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 99 L GN I Q VP K RA SY IR AIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 178
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 179 YG W VDKCLD F CDY F LTGVAE Y QK L ITR N P I FLE R VE G I G IIGGEE AL N WGL S GPMLR A SGI Q WD L RK VDR YE C YDE F D WE 258
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ G V G VVSAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 259 IQWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP yenlesrrfdr IK DP ewn DFEYRFIS K KPSP T -------- F E 330
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP ----------- IK AD --- NPKLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 331 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 403
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
135-403
3.98e-132
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 379.81
E-value: 3.98e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 135 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WVD K CLD F C DYF LTGVA EY QK L I TRN P IF LE R VE 214
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 215 G I G IIGG E E AL NW G LS GPMLRASG IQ WDLRK VDR Y EC YDE F D WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 294
Cdd:pfam00346 81 G V G VLSA E D AL AL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 295 GP YEN l ESRRF --- DRIKDPE - WNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSVF P W R W KIR P P G F I 370
Cdd:pfam00346 161 GP VMA - DDPKI alp PKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2715572021 371 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 403
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
11-403
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 879.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 11 M IT P I TR N DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 90
Cdd:CHL00017 1 M TV P A TR K DLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 91 ITVN G PEQLGNIQVPKRASYIR A IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 170
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 171 GGVAADLPYGW V DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG I GIIGGEEA L NWGLSGPMLRASGIQWDLRKVD R YE 250
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEG V GIIGGEEA I NWGLSGPMLRASGIQWDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 251 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE S RRFDR I KD P EWNDFEYRFISKKPSPTFE 330
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2715572021 331 LSKQELYVRVEAPKGELGIFLIGD Q SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 403
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D SVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
11-403
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 719.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 11 M ITPI TR NDL M IV N M GPHHPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 90
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GPHHPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 91 ITVN G PE Q L G NI Q VPKRASYIR A IMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H NYFR 169
Cdd:PRK07415 81 ITVN A PE K L A NI P VPKRASYIR V IMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 170 IGGVAADLPYGW VD KCLDFCDYF LTGVA EY Q KLIT R NPIF LE R V EG I G I I GG EEA L NWGLSGPMLRASG IQ WDLRKVD R Y 249
Cdd:PRK07415 161 IGGVAADLPYGW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G T I SR EEA I NWGLSGPMLRASG VK WDLRKVD H Y 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 250 ECYD E FDW EIQ W QK EGD S LARY L VRI S EM T ES I KII Q QA LE GIPGGPYENLE SR R FDRI K DP EWN D F E Y RFIS KK PS PTF 329
Cdd:PRK07415 241 ECYD D FDW DVA W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AK R MAEG K KS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2715572021 330 ELSKQ ELYVR V E AP KGELGIF LI G DQS V F PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 403
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
19-403
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 560.84
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 19 DL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP E Q 98
Cdd:COG0649 5 EE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 99 L GN I Q VP K RA S YIR A I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HNYFRIGGV AA DLP 178
Cdd:COG0649 85 L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HNYFRIGGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 179 Y G WVD K CLD F C DYF LTGVA EY QK L I T R N P IF LE R VE G I G IIGG E E A LNW G LS GP M LRASG IQW DLRK VDR Y EC YDE F D WE 258
Cdd:COG0649 165 D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK G V G VLSA E D A IAL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 259 IQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP YENLESRRFDRI K DPEWNDF E YRFIS - K KPSPT F ELSKQ E L Y 337
Cdd:COG0649 245 VPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E V Y 324
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2715572021 338 VR VE A P K GELG IF L IG D QSVF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 403
Cdd:COG0649 325 AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
19-403
1.48e-164
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 466.94
E-value: 1.48e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 19 DLMIV N M GP H HP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVNGP E Q 98
Cdd:PRK06075 5 RNYTL N F GP Q HP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCLAV E K 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 99 L GN I Q VP K RA S YIR AIM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H N Y F R I GGV AA DLP 178
Cdd:PRK06075 85 L LG I E VP E RA Q YIR VLF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 179 Y G WVDKCL DF C DYF LTGVAE Y QK L I T R N P I FLE R VE G I G IIGG E E AL NW G LS GPMLRASG IQ WDLRK VDR YE C YDE F D WE 258
Cdd:PRK06075 165 D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV G V G VVSK E R AL AL G FT GPMLRASG VA WDLRK SQP YE V YDE L D FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 259 IQWQ K E GD SLA RYLVR IS EM TE S IK II Q Q A L E -- GI P G GP YEN l ESRRFDRIKDP E WNDFEYRF I S -- K KPSPT F ELSKQ 334
Cdd:PRK06075 245 VPVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP VMV - DDPKIAPPARL E MKTSMEAL I H hf K LVTEG F RVPAG 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2715572021 335 E L Y VR VE A PKGE L G IF L IG D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 403
Cdd:PRK06075 324 E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
16-403
4.63e-153
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 436.83
E-value: 4.63e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 16 T R NDL M IV N M GP H HPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVNG 95
Cdd:PRK12322 2 L R TEE M LL N V GP Q HPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 96 P E QLGNIQ VP K RA S Y I R A I ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH NY F RIGGV AA 175
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L R V I AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF NY M RIGGV KW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 176 D L P Y GW VD K CLD F CD Y FLTGV A E Y QK L I T R N P IFL E RV E G I GI IGG EEA LNWG LSG PM LR AS G IQ WDLRK VDR Y EC YD E F 255
Cdd:PRK12322 162 D A P D GW IE K VKE F VP Y MREQL A G Y HD L V T G N E IFL N RV K G V GI YSA EEA ISYS LSG VN LR CT G VN WDLRK DEP Y SI YD R F 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 256 D WE I QWQKE GD SLA RY LV R IS E MTE S I KII Q QA L E GI P - G GP yenlesrrfdrikdpewndfeyrf ISK K PSPTFELS K Q 334
Cdd:PRK12322 242 D FD I PVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K G 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2715572021 335 E L YVR V E A P K GE L G IFLIG D QSVF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 403
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
19-403
2.69e-151
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 433.31
E-value: 2.69e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 19 DL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 98
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 99 L GN I Q VP K RA SY IR AIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHN YFRIGGVA A DLP 178
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 179 YG W VDKCLD F CDY F LTGVAE Y QK L ITR N P I FLE R VE G I G IIGGEE AL N WGL S GPMLR A SGI Q WD L RK VDR YE C YDE F D WE 258
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ G V G VVSAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 259 IQWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP yenlesrrfdr IK DP ewn DFEYRFIS K KPSP T -------- F E 330
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP ----------- IK AD --- NPKLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 331 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSVF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 403
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
135-403
3.98e-132
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 379.81
E-value: 3.98e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 135 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H N YFR I GGVA A DLP Y G WVD K CLD F C DYF LTGVA EY QK L I TRN P IF LE R VE 214
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 215 G I G IIGG E E AL NW G LS GPMLRASG IQ WDLRK VDR Y EC YDE F D WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 294
Cdd:pfam00346 81 G V G VLSA E D AL AL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 295 GP YEN l ESRRF --- DRIKDPE - WNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSVF P W R W KIR P P G F I 370
Cdd:pfam00346 161 GP VMA - DDPKI alp PKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2715572021 371 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 403
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
18-403
1.37e-125
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 381.05
E-value: 1.37e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 18 NDLM I V N M GP H HP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN GP E 97
Cdd:PRK13292 402 EETL I L N L GP Q HP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 98 Q L GN I Q VP K RA S YIR AIML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNY FRIGGVA A DL 177
Cdd:PRK13292 482 T L CG I E VP D RA I YIR VMLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 178 P Y GW VDKCLD F CDY F LTGVA EY QK L I T R NPIF LE R VE G I G I I GGE EA LN WG L SGP M LRA S G IQ WDLRK VDR Y EC YD E FD W 257
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK G V G V I TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 258 E IQWQKE GD SL ARYLVR IS EM TE S IK I IQ QA LE G I PGG PYENLES R ----- RF D RI KD P E WNDFEYRFISKK P S P tfel S 332
Cdd:PRK13292 642 E VPTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R yvlpq KR D TL KD I E SLIHHFVNVTRG P A P ---- P 717
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2715572021 333 K Q E L Y VRV EAPKGE L G I F LIG D QSVFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 403
Cdd:PRK13292 718 K G E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
18-403
8.70e-115
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 346.52
E-value: 8.70e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 18 N D L M IV N M GP H HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V NGP E 97
Cdd:PRK11742 189 E D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 98 Q L GN I Q VP K R ASY IR AIML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNY FRIGGVA A DL 177
Cdd:PRK11742 269 K L AG I T VP D R VNV IR VMLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DL 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 178 P Y GW v D KC L - D F C D YFLTGVA EY Q K LIT RN P I FLE R VE G IGIIGGE EAL N WG LS G PM LRA S GI QW D L RK VDR Y EC Y DE FD 256
Cdd:PRK11742 349 P R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ G VAAYNAK EAL E WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD 427
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 257 W E IQWQKE GD SLA R YL V RIS EM TE S IK II Q Q A L EGI P G GP YENLESRRFDRI K DPEWNDF E --- YR F ISKKPS P T fe LSK 333
Cdd:PRK11742 428 F E VPVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKADHPLTTPPP K ERTLQHI E tli TH F LQVSWG P V -- MPA 505
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 334 Q E LYVRV EA P KG ELGIF L IG D Q S VFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 403
Cdd:PRK11742 506 N E SFQMI EA T KG INSYY L TS D G S TMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
20-395
2.16e-92
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 286.10
E-value: 2.16e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 20 LMIVNM GP H H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf TE 89
Cdd:COG3261 122 VHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- CQ 196
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 90 A I tvngp E QLGN I Q VP K RA S Y I R A I M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNYFR 169
Cdd:COG3261 197 A V ----- E KAAG I E VP P RA Q Y L R V I L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGINV 271
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 170 I GGV AA DL PYGWVDKC L DFC D YFLTG V A E YQK L ITRN P IF L E R VE G I G IIGG E E A LNW G LS GP ML RASG IQW D L R KVDR Y 249
Cdd:COG3261 272 P GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VLSK E D A RDL G AV GP VA RASG VDR D V R RDHP Y 351
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2715572021 250 EC YDE F D WEIQWQK EGD SL AR Y LVR IS E MT ES IKI I Q QALE GI P G GP yenlesrrfdr I KD P EWNDFEYRFI skkpsptf 329
Cdd:COG3261 352 AA YDE L D FKVVTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ----------- I RV P VPGLPPDGEG -------- 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2715572021 330 elskqel YV RVEAP K GEL GIFLIG D QSVFPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 395
Cdd:COG3261 413 ------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
