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Conserved domains on  [gi|2732283776|ref|WP_345809666|]
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cytochrome c biogenesis protein CcdA [Capnocytophaga sputigena]

Protein Classification

protein-disulfide reductase DsbD family protein( domain architecture ID 18120940)

protein-disulfide reductase DsbD family protein, similar to DsbD that facilitates the formation of correct disulfide bonds in some periplasmic proteins and is required for the assembly of the periplasmic c-type cytochromes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DsbD COG4232
Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, ...
200-668 3.23e-130

Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443376 [Multi-domain]  Cd Length: 416  Bit Score: 390.32  E-value: 3.23e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 200 TIFFISFLSGFAALLTPCVFPMIPMTVSYFTKQS-KTKAKGVKNAVIYGISIIVIYVLLGSAITAIFGADALNALASNFW 278
Cdd:COG4232     4 LILLLAFLGGLLLNLTPCVLPMLPIKSSIIVGQGgKSRRRAFLLSLAYVLGMALTYTLLGLLAALLGGAVGWGFQLQSPW 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 279 FNLIFFLILVVFAISFLGAFEITLPSSWSTKVDAQADRSGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGG-IAPI 357
Cdd:COG4232    84 VLGALALLFVLLALSMFGLFELQLPSSLQNRLAALSNGGGLLGAFFMGVLAALVATPCTAPFLGGALGYALQTGDaLLGL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 358 IGMFGFSLAIALPFALFAAFPGWLHSLPKSGGWMNTVKVVLGFLELALAFKFLSNADLvlqyHWIEREVFIAIWIAVFAA 437
Cdd:COG4232   164 LALFALGLGMALPLLLLGLFPGLLKLLPKPGAWMETVKQVFGFLLLATAIWLLSVLLP----QAGLDAVALLLWALLLLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 438 LSLYLFGKIRLPHDDATDRISVgRLLLGLVTLSFTVYM-IPGLWGAplnliNAFPPPQhysespygvgytagggstnvde 516
Cdd:COG4232   240 LALWLLGALRLPHDSSGRRLSV-RKGLGLLLLLAGLALlLGALSGA-----DPLQPLA---------------------- 291
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 517 galPEGAHLFKPHNIVTFDDYEKGLAYAKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRE 596
Cdd:COG4232   292 ---AGAAAAAAAAGLAWQADLEAALAEARAEGKPVFVDFTADWCVTCKENERTVFSDPEVQAALADDVVLLKADVTDNDP 368
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2732283776 597 lpesevkpsqiregkmiktigqKWSEFQTlKYKANTQPFYVLMNHQGENLvAPIGYTLdtdDPDEFYQWIKQ 668
Cdd:COG4232   369 ----------------------EITALLK-RFGRFGVPTYVFYDPDGEEL-PRLGFML---TADEFLAALEK 413
DsbC super family cl44605
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
40-140 2.66e-05

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


The actual alignment was detected with superfamily member pfam11412:

Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 43.88  E-value: 2.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776  40 LVATASIEAGWKLYGQNIppngpvptSFKyAQTPAFELVGKTEESKPIVKHDKVFDMEIAYfYRQAVFKQRIKLLGEVTs 119
Cdd:pfam11412  21 LGLRWEIAPGYYLYWDKP--------GFE-WTPPDGVTLGELQLPAPERKPDEFFGEVEVY-EGEVTLPLPLAAAAGAT- 89
                          90       100
                  ....*....|....*....|..
gi 2732283776 120 msIKAEVEFMSCDDSN-CLPPD 140
Cdd:pfam11412  90 --LKLEVTYQGCAEAGiCYPPE 109
 
Name Accession Description Interval E-value
DsbD COG4232
Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, ...
200-668 3.23e-130

Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443376 [Multi-domain]  Cd Length: 416  Bit Score: 390.32  E-value: 3.23e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 200 TIFFISFLSGFAALLTPCVFPMIPMTVSYFTKQS-KTKAKGVKNAVIYGISIIVIYVLLGSAITAIFGADALNALASNFW 278
Cdd:COG4232     4 LILLLAFLGGLLLNLTPCVLPMLPIKSSIIVGQGgKSRRRAFLLSLAYVLGMALTYTLLGLLAALLGGAVGWGFQLQSPW 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 279 FNLIFFLILVVFAISFLGAFEITLPSSWSTKVDAQADRSGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGG-IAPI 357
Cdd:COG4232    84 VLGALALLFVLLALSMFGLFELQLPSSLQNRLAALSNGGGLLGAFFMGVLAALVATPCTAPFLGGALGYALQTGDaLLGL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 358 IGMFGFSLAIALPFALFAAFPGWLHSLPKSGGWMNTVKVVLGFLELALAFKFLSNADLvlqyHWIEREVFIAIWIAVFAA 437
Cdd:COG4232   164 LALFALGLGMALPLLLLGLFPGLLKLLPKPGAWMETVKQVFGFLLLATAIWLLSVLLP----QAGLDAVALLLWALLLLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 438 LSLYLFGKIRLPHDDATDRISVgRLLLGLVTLSFTVYM-IPGLWGAplnliNAFPPPQhysespygvgytagggstnvde 516
Cdd:COG4232   240 LALWLLGALRLPHDSSGRRLSV-RKGLGLLLLLAGLALlLGALSGA-----DPLQPLA---------------------- 291
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 517 galPEGAHLFKPHNIVTFDDYEKGLAYAKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRE 596
Cdd:COG4232   292 ---AGAAAAAAAAGLAWQADLEAALAEARAEGKPVFVDFTADWCVTCKENERTVFSDPEVQAALADDVVLLKADVTDNDP 368
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2732283776 597 lpesevkpsqiregkmiktigqKWSEFQTlKYKANTQPFYVLMNHQGENLvAPIGYTLdtdDPDEFYQWIKQ 668
Cdd:COG4232   369 ----------------------EITALLK-RFGRFGVPTYVFYDPDGEEL-PRLGFML---TADEFLAALEK 413
dipZ PRK00293
thiol:disulfide interchange protein precursor; Provisional
100-586 6.55e-38

thiol:disulfide interchange protein precursor; Provisional


Pssm-ID: 234717 [Multi-domain]  Cd Length: 571  Bit Score: 148.82  E-value: 6.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 100 YFYRQAVFKQRIKL---LGEVTSMSiKAEVEFMSCDDSN-CLPPDSVDLEffLSGIAAANqgatpqftfgnnteenntvp 175
Cdd:PRK00293   90 FFGEVEVYRDRLDLpvpLNQAAAGA-TLTVTYQGCADAGfCYPPETRTVP--LSAVAANS-------------------- 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 176 attvSQTTAPKAPVQTPISHQGLWTIFFISFLSGFAALLTPCVFPMIPMTVSYF--TKQSKTKAKGVKNAVIYGISIIVI 253
Cdd:PRK00293  147 ----APAPAPAPAGQATASLASLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVlgGKQRLSTARALLLSFVYVQGMALT 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 254 YVLLGsAITAIFGADALNALASNfWFnLIFFLIL-VVFAISFLGAFEITLPSSWSTKVDAQADR--SG-FVGIFFM-ALA 328
Cdd:PRK00293  223 YTLLG-LVVAAAGLQFQAALQHP-YV-LIGLSILfVLLALSMFGLFTLQLPSSLQTRLTLLSNRqqGGsLGGVFVMgAIS 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 329 LAIVSFSCTGPIVGTLLVQAAS----EGGIApiigMFGFSLAIALPFALFAAFPGWLhsLPKSGGWMNTVKVVLGFLELA 404
Cdd:PRK00293  300 GLICSPCTTAPLSGALLYIAQSgdllLGGLT----LYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLA 373
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 405 LAFKFLSNadlVLQYHWIerevfIAIWIAVFAALSLYLFGKIRLPHddATDRISVGRLLLglvtlsftVYMIPGLWGAPL 484
Cdd:PRK00293  374 LPVFLLER---VLPGVWG-----LRLWSLLGVAFFGWAFIQSLKAK--RGWMRLLGQILL--------LAALLASVRPLQ 435
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 485 NLinAFPPPQHysespygvgytagggstnvdeGALPEGAHLFKPhnIVTFDDYEKGLAYAKQVNKPVMLDF-TGWsCVNC 563
Cdd:PRK00293  436 DW--AFGGAAA---------------------GAQTQAHLNFQR--IKTVAELDQALAEAKGKGKPVMLDLyADW-CVAC 489
                         490       500
                  ....*....|....*....|...
gi 2732283776 564 RKMEQNVWPNPQVLDALRNEVVL 586
Cdd:PRK00293  490 KEFEKYTFSDPQVQQALADTVLL 512
DsbD pfam02683
Cytochrome C biogenesis protein transmembrane region; This family consists of the ...
205-379 1.03e-17

Cytochrome C biogenesis protein transmembrane region; This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.


Pssm-ID: 280792 [Multi-domain]  Cd Length: 213  Bit Score: 82.45  E-value: 1.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 205 SFLSGFAALLTPCVFPMIPMTVSYFT-------KQSKTKAKGVKNAVIYGISIIVIYVLLGsaitaiFGADALNALASNF 277
Cdd:pfam02683   1 AFLAGLLSFLSPCILPLIPAYLSYISgvsvgdrKQGKKRVRVLLKSLLFVLGLSLVFVLLG------LSAAFLGQLFGDF 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 278 --WFNLIFFLILVVFAISFLGAFEIT------LPSSWSTKVDAQadrsgFVGIFFMALALAIVSFSCTGPIVGTLLVQAA 349
Cdd:pfam02683  75 kgWVRIIAGLIVILFGLHFLGVFRIPflyklrLVHKTKKKISLP-----VLGAFLLGMTFALGWTPCIGPILASVLALAA 149
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2732283776 350 SEGGIAPIIG-MFGFSLAIALPFALFAAFPG 379
Cdd:pfam02683 150 STGSLLLGAGlMVVYVLGLAAPFLLASLFFG 180
DsbDgamma cd02953
DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein ...
541-587 2.76e-09

DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.


Pssm-ID: 239251 [Multi-domain]  Cd Length: 104  Bit Score: 54.92  E-value: 2.76e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2732283776 541 LAYAKQVNKPVMLDFTG-WsCVNCRKMEQNVWPNPQVLDALRNEVVLI 587
Cdd:cd02953     4 LAQALAQGKPVFVDFTAdW-CVTCKVNEKVVFSDPEVQAALKKDVVLL 50
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
40-140 2.66e-05

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 43.88  E-value: 2.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776  40 LVATASIEAGWKLYGQNIppngpvptSFKyAQTPAFELVGKTEESKPIVKHDKVFDMEIAYfYRQAVFKQRIKLLGEVTs 119
Cdd:pfam11412  21 LGLRWEIAPGYYLYWDKP--------GFE-WTPPDGVTLGELQLPAPERKPDEFFGEVEVY-EGEVTLPLPLAAAAGAT- 89
                          90       100
                  ....*....|....*....|..
gi 2732283776 120 msIKAEVEFMSCDDSN-CLPPD 140
Cdd:pfam11412  90 --LKLEVTYQGCAEAGiCYPPE 109
 
Name Accession Description Interval E-value
DsbD COG4232
Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, ...
200-668 3.23e-130

Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443376 [Multi-domain]  Cd Length: 416  Bit Score: 390.32  E-value: 3.23e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 200 TIFFISFLSGFAALLTPCVFPMIPMTVSYFTKQS-KTKAKGVKNAVIYGISIIVIYVLLGSAITAIFGADALNALASNFW 278
Cdd:COG4232     4 LILLLAFLGGLLLNLTPCVLPMLPIKSSIIVGQGgKSRRRAFLLSLAYVLGMALTYTLLGLLAALLGGAVGWGFQLQSPW 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 279 FNLIFFLILVVFAISFLGAFEITLPSSWSTKVDAQADRSGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGG-IAPI 357
Cdd:COG4232    84 VLGALALLFVLLALSMFGLFELQLPSSLQNRLAALSNGGGLLGAFFMGVLAALVATPCTAPFLGGALGYALQTGDaLLGL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 358 IGMFGFSLAIALPFALFAAFPGWLHSLPKSGGWMNTVKVVLGFLELALAFKFLSNADLvlqyHWIEREVFIAIWIAVFAA 437
Cdd:COG4232   164 LALFALGLGMALPLLLLGLFPGLLKLLPKPGAWMETVKQVFGFLLLATAIWLLSVLLP----QAGLDAVALLLWALLLLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 438 LSLYLFGKIRLPHDDATDRISVgRLLLGLVTLSFTVYM-IPGLWGAplnliNAFPPPQhysespygvgytagggstnvde 516
Cdd:COG4232   240 LALWLLGALRLPHDSSGRRLSV-RKGLGLLLLLAGLALlLGALSGA-----DPLQPLA---------------------- 291
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 517 galPEGAHLFKPHNIVTFDDYEKGLAYAKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRE 596
Cdd:COG4232   292 ---AGAAAAAAAAGLAWQADLEAALAEARAEGKPVFVDFTADWCVTCKENERTVFSDPEVQAALADDVVLLKADVTDNDP 368
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2732283776 597 lpesevkpsqiregkmiktigqKWSEFQTlKYKANTQPFYVLMNHQGENLvAPIGYTLdtdDPDEFYQWIKQ 668
Cdd:COG4232   369 ----------------------EITALLK-RFGRFGVPTYVFYDPDGEEL-PRLGFML---TADEFLAALEK 413
dipZ PRK00293
thiol:disulfide interchange protein precursor; Provisional
100-586 6.55e-38

thiol:disulfide interchange protein precursor; Provisional


Pssm-ID: 234717 [Multi-domain]  Cd Length: 571  Bit Score: 148.82  E-value: 6.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 100 YFYRQAVFKQRIKL---LGEVTSMSiKAEVEFMSCDDSN-CLPPDSVDLEffLSGIAAANqgatpqftfgnnteenntvp 175
Cdd:PRK00293   90 FFGEVEVYRDRLDLpvpLNQAAAGA-TLTVTYQGCADAGfCYPPETRTVP--LSAVAANS-------------------- 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 176 attvSQTTAPKAPVQTPISHQGLWTIFFISFLSGFAALLTPCVFPMIPMTVSYF--TKQSKTKAKGVKNAVIYGISIIVI 253
Cdd:PRK00293  147 ----APAPAPAPAGQATASLASLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVlgGKQRLSTARALLLSFVYVQGMALT 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 254 YVLLGsAITAIFGADALNALASNfWFnLIFFLIL-VVFAISFLGAFEITLPSSWSTKVDAQADR--SG-FVGIFFM-ALA 328
Cdd:PRK00293  223 YTLLG-LVVAAAGLQFQAALQHP-YV-LIGLSILfVLLALSMFGLFTLQLPSSLQTRLTLLSNRqqGGsLGGVFVMgAIS 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 329 LAIVSFSCTGPIVGTLLVQAAS----EGGIApiigMFGFSLAIALPFALFAAFPGWLhsLPKSGGWMNTVKVVLGFLELA 404
Cdd:PRK00293  300 GLICSPCTTAPLSGALLYIAQSgdllLGGLT----LYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLA 373
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 405 LAFKFLSNadlVLQYHWIerevfIAIWIAVFAALSLYLFGKIRLPHddATDRISVGRLLLglvtlsftVYMIPGLWGAPL 484
Cdd:PRK00293  374 LPVFLLER---VLPGVWG-----LRLWSLLGVAFFGWAFIQSLKAK--RGWMRLLGQILL--------LAALLASVRPLQ 435
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 485 NLinAFPPPQHysespygvgytagggstnvdeGALPEGAHLFKPhnIVTFDDYEKGLAYAKQVNKPVMLDF-TGWsCVNC 563
Cdd:PRK00293  436 DW--AFGGAAA---------------------GAQTQAHLNFQR--IKTVAELDQALAEAKGKGKPVMLDLyADW-CVAC 489
                         490       500
                  ....*....|....*....|...
gi 2732283776 564 RKMEQNVWPNPQVLDALRNEVVL 586
Cdd:PRK00293  490 KEFEKYTFSDPQVQQALADTVLL 512
CcdA COG0785
Cytochrome c biogenesis protein CcdA [Energy production and conversion, Posttranslational ...
202-384 5.53e-26

Cytochrome c biogenesis protein CcdA [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440548 [Multi-domain]  Cd Length: 193  Bit Score: 105.70  E-value: 5.53e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 202 FFISFLSGFAALLTPCVFPMIPMTVSYFTKQSKT-KAKGVKNAVIYGISIIVIYVLLGSAITAIFGAdalnALASNFWFN 280
Cdd:COG0785     5 LLLAFLAGLLSFLSPCVLPLLPGYLSYLTGLSRAsRRRALLRALLFVLGFSLVFVLLGALASALGSL----LGQYQDLLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 281 LIFFLILVVFAISFLGAFEITLpSSWSTKVDAqADRSGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGGIAPIIG- 359
Cdd:COG0785    81 IVAGVLLILFGLVLLGLLKIPF-LQREARINL-RRKAGLLGAFLLGLAFGLGWTPCIGPILGAILALAATSGSVLRGALl 158
                         170       180
                  ....*....|....*....|....*
gi 2732283776 360 MFGFSLAIALPFALFAAFPGWLHSL 384
Cdd:COG0785   159 LLAYALGLGLPFLLLALFAGRLLGR 183
DsbD pfam02683
Cytochrome C biogenesis protein transmembrane region; This family consists of the ...
205-379 1.03e-17

Cytochrome C biogenesis protein transmembrane region; This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.


Pssm-ID: 280792 [Multi-domain]  Cd Length: 213  Bit Score: 82.45  E-value: 1.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 205 SFLSGFAALLTPCVFPMIPMTVSYFT-------KQSKTKAKGVKNAVIYGISIIVIYVLLGsaitaiFGADALNALASNF 277
Cdd:pfam02683   1 AFLAGLLSFLSPCILPLIPAYLSYISgvsvgdrKQGKKRVRVLLKSLLFVLGLSLVFVLLG------LSAAFLGQLFGDF 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 278 --WFNLIFFLILVVFAISFLGAFEIT------LPSSWSTKVDAQadrsgFVGIFFMALALAIVSFSCTGPIVGTLLVQAA 349
Cdd:pfam02683  75 kgWVRIIAGLIVILFGLHFLGVFRIPflyklrLVHKTKKKISLP-----VLGAFLLGMTFALGWTPCIGPILASVLALAA 149
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2732283776 350 SEGGIAPIIG-MFGFSLAIALPFALFAAFPG 379
Cdd:pfam02683 150 STGSLLLGAGlMVVYVLGLAAPFLLASLFFG 180
SoxW COG2143
Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones] ...
534-667 4.69e-11

Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441746 [Multi-domain]  Cd Length: 146  Bit Score: 61.07  E-value: 4.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 534 FDDYEKGLAYAKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRELPESEvkpsqiregkmi 613
Cdd:COG2143    26 LLDLEEDLALAKAEGKPILLFFESDWCPYCKKLHKEVFSDPEVAAYLKENFVVVQLDAEGDKEVTDFD------------ 93
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2732283776 614 ktiGQKWSEFQ-TLKYKANTQPFYVLMNHQGeNLVAPI-GYTldtdDPDEFYQWIK 667
Cdd:COG2143    94 ---GETLTEKElARKYGVRGTPTLVFFDAEG-KEIARIpGYL----KPETFLALLK 141
Thioredoxin_7 pfam13899
Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the ...
535-604 2.48e-09

Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.


Pssm-ID: 433567 [Multi-domain]  Cd Length: 84  Bit Score: 54.29  E-value: 2.48e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 535 DDYEKGLAYAKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLisLYVDDKRELPESEVKP 604
Cdd:pfam13899   4 SDLEEALAAAAERGKPVLVDFGADWCFTCQVLERDFLSHEEVKAALAKNFVL--LRLDWTSRDANITRAF 71
DsbDgamma cd02953
DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein ...
541-587 2.76e-09

DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.


Pssm-ID: 239251 [Multi-domain]  Cd Length: 104  Bit Score: 54.92  E-value: 2.76e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2732283776 541 LAYAKQVNKPVMLDFTG-WsCVNCRKMEQNVWPNPQVLDALRNEVVLI 587
Cdd:cd02953     4 LAQALAQGKPVFVDFTAdW-CVTCKVNEKVVFSDPEVQAALKKDVVLL 50
Thioredoxin_2 pfam13098
Thioredoxin-like domain;
548-666 6.41e-07

Thioredoxin-like domain;


Pssm-ID: 379034 [Multi-domain]  Cd Length: 103  Bit Score: 48.19  E-value: 6.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 548 NKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRElpesevKPSQIREGKMIKTIGQkwsefqtlK 627
Cdd:pfam13098   4 GKPVLVVFTDPDCPYCKKLKKELLEDPDVTVYLGPNFVFIAVNIWCAKE------VAKAFTDILENKELGR--------K 69
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2732283776 628 YKANTQPFYVLMNHQGENLVAPiGYTldtdDPDEFYQWI 666
Cdd:pfam13098  70 YGVRGTPTIVFFDGKGELLRLP-GYV----PAEEFLALL 103
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
40-140 2.66e-05

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 43.88  E-value: 2.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776  40 LVATASIEAGWKLYGQNIppngpvptSFKyAQTPAFELVGKTEESKPIVKHDKVFDMEIAYfYRQAVFKQRIKLLGEVTs 119
Cdd:pfam11412  21 LGLRWEIAPGYYLYWDKP--------GFE-WTPPDGVTLGELQLPAPERKPDEFFGEVEVY-EGEVTLPLPLAAAAGAT- 89
                          90       100
                  ....*....|....*....|..
gi 2732283776 120 msIKAEVEFMSCDDSN-CLPPD 140
Cdd:pfam11412  90 --LKLEVTYQGCAEAGiCYPPE 109
AraJ COG2814
Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];
255-487 4.15e-05

Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];


Pssm-ID: 442063 [Multi-domain]  Cd Length: 348  Bit Score: 46.12  E-value: 4.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 255 VLLGSAITAIFGAdALNALASNFWFnliffLILVVFAISFLGAFEITLPSSWSTKVDAQADRSGFVGIFFMALALAIVSf 334
Cdd:COG2814    77 VLLLGLLLFALGS-LLCALAPSLWL-----LLAARFLQGLGAGALFPAALALIADLVPPERRGRALGLLGAGLGLGPAL- 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 335 sctGPIVGTLLVQAASEGGIapiigmFGFSLAIALPFALFAAF--------------PGWLHSLPKSGGWMNTVKVVLGF 400
Cdd:COG2814   150 ---GPLLGGLLADLFGWRWV------FLVNAVLALLALLLLLRllpesrpaararlrGSLRELLRRPRLLLLLLLAFLLG 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 401 LELALAFKFLSNAdLVLQYHWIEREV-FIAIWIAVFAALSLYLFGKIrlphddaTDRISVGRLLLGLVTLSFTVYMIPGL 479
Cdd:COG2814   221 FGFFALFTYLPLY-LQEVLGLSASAAgLLLALFGLGGVLGALLAGRL-------ADRFGRRRLLLIGLLLLALGLLLLAL 292

                  ....*...
gi 2732283776 480 WGAPLNLI 487
Cdd:COG2814   293 AGSLWLLL 300
ProP COG0477
MFS family permease, includes anhydromuropeptide permease AmpG [Carbohydrate transport and ...
196-407 5.68e-04

MFS family permease, includes anhydromuropeptide permease AmpG [Carbohydrate transport and metabolism, Amino acid transport and metabolism, Inorganic ion transport and metabolism, General function prediction only];


Pssm-ID: 440245 [Multi-domain]  Cd Length: 295  Bit Score: 42.49  E-value: 5.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 196 QGLWTIFFISFLSGF-AALLTPCVFPMIpmtVSYFTKQSKTKAkgvknaviygISIIVIYVLLGSAITAIFGAdalnALA 274
Cdd:COG0477   100 PSPELLIAARALQGIgAGGLMPGALALI---AELFPARERGRA----------LGLWGAAIGLGLALGPLLGG----LLV 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 275 SNFWFNLIFFLILVVFAISFLGAFeiTLPSSWSTKVDAQADRSGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGGI 354
Cdd:COG0477   163 AALGWRWIFLINAPLGLLALVLRL--RLPESRGLLLALLALALAALLLAALALALLALLLLLLLLLLALLALLLAGAALL 240
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2732283776 355 APIIGMFGFSLAIALPFALFAAFPGWLHSLPKSGGWMNTVKVVLGFLELALAF 407
Cdd:COG0477   241 LLLALLLLALLLLLALLLLAALLLLLLLLLLLALLLALLLLLLLLLLLLLLAL 293
MFS_NepI_like cd17324
Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator ...
255-487 7.03e-04

Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340882 [Multi-domain]  Cd Length: 370  Bit Score: 42.54  E-value: 7.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 255 VLLGSAITAIFGAdALNALASNFWFnLIFFLILVVFAISflGAFEITLPssWSTKVDAQADRSGFVGIFFMALALAIVsf 334
Cdd:cd17324    66 LLLVLLLLFILGN-LLAALAPSFAL-LLLARALAGLAHG--GFWAIAAA--YAADLVPPEKRGRAIGLVFSGLTLGLV-- 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 335 scTGPIVGTLLVQAASEGGIAPIIGMFGFSLAIALPFALfaafPGWLHSLPKSGGWMNTVKVVLGF--LELALAFKFLSN 412
Cdd:cd17324   138 --LGRPLGGLLGQLLGWRAAFLAIAVLALLAALLLWRLL----PSLPPKKPGSLGLLSSLLLLLRNprLRLAYLITFLLF 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 413 ADLVLQYHWIE---------REVFIAIWIAVF---AALSLYLFGKIrlphddaTDRISVGRLLLGLVTLSFTVYMIPGLW 480
Cdd:cd17324   212 GGFFALYTYLApfltdvpgfSSSAIIGLLLLFgvaGVVGSPLAGRL-------ADRGGRRALLIALLLLAAALLLLTLLG 284

                  ....*..
gi 2732283776 481 GAPLNLI 487
Cdd:cd17324   285 PSPLLLL 291
MFS_SV2_like cd17316
Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the ...
256-377 1.30e-03

Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340874 [Multi-domain]  Cd Length: 353  Bit Score: 41.43  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 256 LLGSAITAIFGADALNALASNFWFNLIFFLILVVFAISFLGAFEITLPSSWSTKVDAQAdrsgfVGIFFmalALAIVSFS 335
Cdd:cd17316   247 VIGLILSGILALPLFYLLSGSPTLLLLLLFILSFFVGGVWGALYAYLAELFPTEVRATG-----VGLSY---NLGRLGGG 318
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2732283776 336 CTGPIVGTLLVQaaseggiAPIIGMFGFSLAIALPFALFAAF 377
Cdd:cd17316   319 GAPPLIALLLAS-------TGGTGVPALILALLAIVALIVAL 353
MFS_MdtG_SLC18_like cd17325
bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator ...
169-375 1.88e-03

bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters; This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340883 [Multi-domain]  Cd Length: 375  Bit Score: 41.02  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 169 EENNTVPATTVSQTTAPKAPVQTPISHQGLWTIFFISFLSGFAALLtpcVFPMIPMTVsyftkQSKTKAKGVKNAVIYGI 248
Cdd:cd17325   172 PEPRPPPNKRAVSAARLRSGLRLLLRDRRLLALFLAIFVLAFAFGA---LEPFLPLYA-----AELGGLSPAQIGLLFGA 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 249 SIIV------------------IYVLLGSAITAIFGAdaLNALASNFWFnLIFFLILVVFAISFLGAfeitlpsSWSTKV 310
Cdd:cd17325   244 QGLAsalsqppagklsdrigrkPLILIGLLLSAVALL--LLPLATSFWL-LLLLLALLGLGLGLVFP-------ATLALL 313
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2732283776 311 DAQADRSGF---VGIFFMALALAIVsfscTGPIVGTLLVQAAseGGIAPIIGMFGFSLAIALPFALFA 375
Cdd:cd17325   314 ADIVPPEGRgtaMGLFNTAFSLGMV----LGPLLGGFLYDAF--GFATPFLAAAALLLLAAVLFLLLR 375
SoxW cd02951
SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, ...
544-668 2.11e-03

SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.


Pssm-ID: 239249 [Multi-domain]  Cd Length: 125  Bit Score: 38.45  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 544 AKQVNKPVMLDFTGWSCVNCRKMEQNVWPNPQVLDALRNEVVLISLYVDDKRELPESevkpsqiregKMIKTIGQKWSEf 623
Cdd:cd02951    10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDF----------DGEALSEKELAR- 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2732283776 624 qtlKYKANTQPFYVLMNHQGENLVAPI-GYTLdtddPDEFYQWIKQ 668
Cdd:cd02951    79 ---KYRVRFTPTVIFLDPEGGKEIARLpGYLP----PDEFLAYLEY 117
MFS_1 pfam07690
Major Facilitator Superfamily;
196-400 2.14e-03

Major Facilitator Superfamily;


Pssm-ID: 429598 [Multi-domain]  Cd Length: 344  Bit Score: 40.86  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 196 QGLWTIFFISFLSGFA-ALLTPcvfPMIPMTVSYFTKQSKTKAkgvknaviygISIIVIYVLLGSAITAIFGAdalnALA 274
Cdd:pfam07690  83 SSLWLLLVLRVLQGLGaGALFP---AALALIADWFPPEERGRA----------LGLVSAGFGLGAALGPLLGG----LLA 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 275 SNFWFNLIFFLILVVFAISFLGAF----EITLPSSWSTKVDAQADRSGFVGIFFMALALAIVSFSCTGPIVGTLL----- 345
Cdd:pfam07690 146 SLFGWRAAFLILAILSLLAAVLLLlprpPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLtylpl 225
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2732283776 346 ---------VQAASEGGIAPIIGMFGFSLA--------------IALPFALFAAFPGWLHSLPKSGGWMNTVKVVLGF 400
Cdd:pfam07690 226 yqevlglsaLLAGLLLGLGGLLGAIGRLLLgrlsdrlgrrrrllLALLLLILAALGLLLLSLTLSSLWLLLALLLLGF 303
TrxA COG0526
Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, ...
549-670 2.51e-03

Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440292 [Multi-domain]  Cd Length: 139  Bit Score: 38.90  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 549 KPVMLDFTGWSCVNCRKMEqnvwpnpQVLDALRNE---VVLISLYVDDKRELPEsevkpSQIREGKMIKTIGQKWSEFQT 625
Cdd:COG0526    29 KPVLVNFWATWCPPCRAEM-------PVLKELAEEyggVVFVGVDVDENPEAVK-----AFLKELGLPYPVLLDPDGELA 96
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2732283776 626 LKYKANTQPFYVLMNHQGENLVAPIGYTldtdDPDEFYQWIKQGI 670
Cdd:COG0526    97 KAYGVRGIPTTVLIDKDGKIVARHVGPL----SPEELEEALEKLL 137
TauE COG0730
Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family [Inorganic ion transport ...
251-382 4.81e-03

Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family [Inorganic ion transport and metabolism];


Pssm-ID: 440494  Cd Length: 250  Bit Score: 39.41  E-value: 4.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 251 IVIYVLLGSAITAIFGAdALNALASNFWFNLIFFLILVVFAISFLgafeitLPSSWSTKVDAQADRSGFVGIFFMALALA 330
Cdd:COG0730    72 LLLPLALGALIGALLGA-LLLLLLPADVLKLLFGVLLLLVALLML------LRPKPGAEPERRLPRRSPLLLLLLGFVIG 144
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2732283776 331 IVSFScTGPIVGTLLVQAASEGGIAPIIGMFGFSLAIALPFALFAAFPGWLH 382
Cdd:COG0730   145 FLSGL-FGIGGGFLLVPALVLLLGLPLKRAVATSLALIFVTALAGLIGFALL 195
DUF4153 pfam13687
Domain of unknown function (DUF4153); Members of this family are annotated as putative inner ...
317-473 5.29e-03

Domain of unknown function (DUF4153); Members of this family are annotated as putative inner membrane proteins.


Pssm-ID: 463956  Cd Length: 371  Bit Score: 39.61  E-value: 5.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 317 SGFVGIFFMALALAIVSFSCTGPIVGTLLVQAASEGGIAPIIGMFGFslaIALPFALFAAFPGWLHSLPKSGGWMNTVKV 396
Cdd:pfam13687  16 NPWLIVLNLLAILLLGLLALLQFAGGRTWRLILLGLLLLPLLFGFAL---IGLPFLLLAGFRKIRGSKRKRLFGYVLLGL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 397 VLGFLELALAFKFLSNADLVLQyHWIER--------EVFIAIWIAVFAALSLYLFG----KIRLPHDDATDRISVGRLLL 464
Cdd:pfam13687  93 LIALPLLLVFLALLASADAAFA-SLLGRlfpdifpgLLFGLLWLLLALLLGFLLFGalyfLALPPKPDEELEPERPSLPR 171

                  ....*....
gi 2732283776 465 GLVTLSFTV 473
Cdd:pfam13687 172 VEVITVLGL 180
AraJ COG2814
Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];
196-381 5.59e-03

Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];


Pssm-ID: 442063 [Multi-domain]  Cd Length: 348  Bit Score: 39.57  E-value: 5.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 196 QGLWTIFFISFLSGFA-ALLTPCVFPMIpmtVSYFTKQSKTKAkgvknaviygISIIVIYVLLGSAITAIFGAdalnALA 274
Cdd:COG2814    96 PSLWLLLAARFLQGLGaGALFPAALALI---ADLVPPERRGRA----------LGLLGAGLGLGPALGPLLGG----LLA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2732283776 275 SNFWFNLIFFLILVVFAISFLGAFeITLPSSWSTKVDAQADRSGFV---GIFFMALALAIVSFSCTGPIVGTLLVQAASE 351
Cdd:COG2814   159 DLFGWRWVFLVNAVLALLALLLLL-RLLPESRPAARARLRGSLRELlrrPRLLLLLLLAFLLGFGFFALFTYLPLYLQEV 237
                         170       180       190
                  ....*....|....*....|....*....|.
gi 2732283776 352 GGIAPiiGMFGFSLAIALPFALFAAFP-GWL 381
Cdd:COG2814   238 LGLSA--SAAGLLLALFGLGGVLGALLaGRL 266
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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