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Conserved domains on  [gi|2727058534|ref|WP_343032238|]
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entericidin A/B family lipoprotein [Allochromatium palmeri]

Protein Classification

COG5510 family protein( domain architecture ID 10009370)

COG5510 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-39 1.10e-12

Predicted small secreted protein [Function unknown];


:

Pssm-ID: 444261  Cd Length: 45  Bit Score: 54.47  E-value: 1.10e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2727058534  1 MLILLVTIGGLSGCNTIEGAGKDIQSGGDAVSETARDVK 39
Cdd:COG5510    7 LLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-39 1.10e-12

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 54.47  E-value: 1.10e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2727058534  1 MLILLVTIGGLSGCNTIEGAGKDIQSGGDAVSETARDVK 39
Cdd:COG5510    7 LLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 16-35 1.23e-05

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 36.51  E-value: 1.23e-05
                         10        20
                 ....*....|....*....|
gi 2727058534 16 TIEGAGKDIQSGGDAVSETA 35
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK10081 PRK10081
lipoprotein toxin entericidin B;
4-35 2.34e-03

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 31.20  E-value: 2.34e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2727058534  4 LLVTIGGLSGCNTIEGAGKDIQSGGDAVSETA 35
Cdd:PRK10081  12 VLVLSTVLTACNTTRGVGEDISDGGNAISGAA 43
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-39 1.10e-12

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 54.47  E-value: 1.10e-12
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2727058534  1 MLILLVTIGGLSGCNTIEGAGKDIQSGGDAVSETARDVK 39
Cdd:COG5510    7 LLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 16-35 1.23e-05

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 36.51  E-value: 1.23e-05
                         10        20
                 ....*....|....*....|
gi 2727058534 16 TIEGAGKDIQSGGDAVSETA 35
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK10081 PRK10081
lipoprotein toxin entericidin B;
4-35 2.34e-03

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 31.20  E-value: 2.34e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2727058534  4 LLVTIGGLSGCNTIEGAGKDIQSGGDAVSETA 35
Cdd:PRK10081  12 VLVLSTVLTACNTTRGVGEDISDGGNAISGAA 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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