NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2639429530|ref|WP_322787349|]
View 

rRNA adenine N-6-methyltransferase family protein, partial [Staphylococcus aureus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
AdoMet_MTases super family cl17173
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 1-36 2.35e-06

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


The actual alignment was detected with superfamily member pfam00398:

Pssm-ID: 473071 [Multi-domain]  Cd Length: 263  Bit Score: 40.81  E-value: 2.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2639429530   1 IVLERH-QPLISKKDYKKYRSFVYKWVNREYRVLFTK 36
Cdd:pfam00398 186 VRLERHdPDPHPVKDLDVYDSVVRKLFNRKRKTLSTS 222
 
Name Accession Description Interval E-value
RrnaAD pfam00398
Ribosomal RNA adenine dimethylase;
1-36 2.35e-06

Ribosomal RNA adenine dimethylase;


Pssm-ID: 395321 [Multi-domain]  Cd Length: 263  Bit Score: 40.81  E-value: 2.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2639429530   1 IVLERH-QPLISKKDYKKYRSFVYKWVNREYRVLFTK 36
Cdd:pfam00398 186 VRLERHdPDPHPVKDLDVYDSVVRKLFNRKRKTLSTS 222
 
Name Accession Description Interval E-value
RrnaAD pfam00398
Ribosomal RNA adenine dimethylase;
1-36 2.35e-06

Ribosomal RNA adenine dimethylase;


Pssm-ID: 395321 [Multi-domain]  Cd Length: 263  Bit Score: 40.81  E-value: 2.35e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2639429530   1 IVLERH-QPLISKKDYKKYRSFVYKWVNREYRVLFTK 36
Cdd:pfam00398 186 VRLERHdPDPHPVKDLDVYDSVVRKLFNRKRKTLSTS 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH