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Conserved domains on  [gi|2597423519|ref|WP_317198268|]
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DUF4972 domain-containing protein [Bacteroides thetaiotaomicron]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4972 super family cl24797
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 29-120 1.06e-09

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


The actual alignment was detected with superfamily member pfam16342:

Pssm-ID: 435287  Cd Length: 128  Bit Score: 56.49  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519  29 FTACSDDKDNEYISDTQLSI------LEDNRTSLSYLLKNSTFGTAPGTFPEASKEILNNAIAELDQLITKVK-GGEMFD 101
Cdd:pfam16342  23 LISCSDDDHESYTAAPEVKTdiyieqLEELINKLTDLQKNSEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKeQNPVPA 102

                          90
                  ....*....|....*....
gi 2597423519 102 EATFEATIAKVNQAIDEFK 120
Cdd:pfam16342 103 EQEKQRYVAEAKSAIDKFK 121
DUF4972 super family cl24797
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 117-219 7.27e-03

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


The actual alignment was detected with superfamily member pfam16342:

Pssm-ID: 435287  Cd Length: 128  Bit Score: 36.85  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519 117 DEFKNSKYYNLSPEAQKFISDLMAKADELREMIANeALWGNHQGQYPVEGKATLESAAEDLESLADRIKTSAITDMTQEI 196
Cdd:pfam16342  28 DDDHESYTAAPEVKTDIYIEQLEELINKLTDLQKN-SEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKEQNPVPAEQEK 106

                          90       100
                  ....*....|....*....|...
gi 2597423519 197 yDDAIAAADKKLQEVENSAWPED 219
Cdd:pfam16342 107 -QRYVAEAKSAIDKFKATIRTED 128
 
Name Accession Description Interval E-value
DUF4972 pfam16342
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 29-120 1.06e-09

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


Pssm-ID: 435287  Cd Length: 128  Bit Score: 56.49  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519  29 FTACSDDKDNEYISDTQLSI------LEDNRTSLSYLLKNSTFGTAPGTFPEASKEILNNAIAELDQLITKVK-GGEMFD 101
Cdd:pfam16342  23 LISCSDDDHESYTAAPEVKTdiyieqLEELINKLTDLQKNSEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKeQNPVPA 102

                          90
                  ....*....|....*....
gi 2597423519 102 EATFEATIAKVNQAIDEFK 120
Cdd:pfam16342 103 EQEKQRYVAEAKSAIDKFK 121
DUF4972 pfam16342
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 117-219 7.27e-03

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


Pssm-ID: 435287  Cd Length: 128  Bit Score: 36.85  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519 117 DEFKNSKYYNLSPEAQKFISDLMAKADELREMIANeALWGNHQGQYPVEGKATLESAAEDLESLADRIKTSAITDMTQEI 196
Cdd:pfam16342  28 DDDHESYTAAPEVKTDIYIEQLEELINKLTDLQKN-SEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKEQNPVPAEQEK 106

                          90       100
                  ....*....|....*....|...
gi 2597423519 197 yDDAIAAADKKLQEVENSAWPED 219
Cdd:pfam16342 107 -QRYVAEAKSAIDKFKATIRTED 128
 
Name Accession Description Interval E-value
DUF4972 pfam16342
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 29-120 1.06e-09

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


Pssm-ID: 435287  Cd Length: 128  Bit Score: 56.49  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519  29 FTACSDDKDNEYISDTQLSI------LEDNRTSLSYLLKNSTFGTAPGTFPEASKEILNNAIAELDQLITKVK-GGEMFD 101
Cdd:pfam16342  23 LISCSDDDHESYTAAPEVKTdiyieqLEELINKLTDLQKNSEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKeQNPVPA 102

                          90
                  ....*....|....*....
gi 2597423519 102 EATFEATIAKVNQAIDEFK 120
Cdd:pfam16342 103 EQEKQRYVAEAKSAIDKFK 121
DUF4972 pfam16342
Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around ...
 117-219 7.27e-03

Domain of unknown function (DUF4972); This family consists of uncharacterized proteins around 490 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


Pssm-ID: 435287  Cd Length: 128  Bit Score: 36.85  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2597423519 117 DEFKNSKYYNLSPEAQKFISDLMAKADELREMIANeALWGNHQGQYPVEGKATLESAAEDLESLADRIKTSAITDMTQEI 196
Cdd:pfam16342  28 DDDHESYTAAPEVKTDIYIEQLEELINKLTDLQKN-SEYGEKKGQYPTESRAILTDAIDDLNRSVLLIKEQNPVPAEQEK 106

                          90       100
                  ....*....|....*....|...
gi 2597423519 197 yDDAIAAADKKLQEVENSAWPED 219
Cdd:pfam16342 107 -QRYVAEAKSAIDKFKATIRTED 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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