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Conserved domains on  [gi|2569743979|ref|WP_306875084|]
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SCO3242 family prenyltransferase [Streptosporangium brasiliense]

Protein Classification

UbiA prenyltransferase family protein( domain architecture ID 91)

UbiA prenyltransferase family protein, an aromatic prenyltransferase, plays an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PT_UbiA super family cl00337
UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA ...
 7-352 2.37e-42

UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


The actual alignment was detected with superfamily member cd13964:

Pssm-ID: 469727  Cd Length: 282  Bit Score: 148.50  E-value: 2.37e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   7 LLELVRGPAVLSVPGDVVAGGSAAGTLGR---RTPALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVSPgLAL 83
Cdd:cd13964     1 YLQLVRLPNLFTVPADVLAGAALAGGGLGpvlRLALLLLASVLLYAAGMVLNDVFDAELDARERPERPIPSGRVSR-GAA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979  84 AAAAGLTGAGLAAAGLAAGRRGLAVAVPLAAAIWTYDLLAKDTPAGPAVMAACRALDVLLGACPAAGrpdsrdgtgfrgg 163
Cdd:cd13964    80 LALGAGLLAAGVALAALVGRLSGLVALLLAAAILLYDAWLKHTPLGPLLMGLCRGLNLLLGASAAAA------------- 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 164 tgfragtdsrggtgfrggtgfragtdlrdgtgfqggtgappGGGPRAWPPprtfaaalppALAVAAHTYMITSLSRREVS 243
Cdd:cd13964   147 -----------------------------------------GGLGPALLA----------ALALGVYIAGVTYIARGEVH 175

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 244 GADRLLPTATLAATAALAAGVAAAGRGRGAGRGPALqaALASWYLARFGSAQARAVADPSAPRIRGAVGTGITVLPALQG 323
Cdd:cd13964   176 GGPRRLLPLALLAVLLVIGLALALAAPRGGRVLLAL--LFLALFAAWVGRPLLRAYRDPSPPNIGKAVGAGILSLIPLDA 253

                         330       340
                  ....*....|....*....|....*....
gi 2569743979 324 ALAVRAGAVPAGLAVAVAAPLGRRLARKV 352
Cdd:cd13964   254 ALAAAFGGPALALLVLALLPLALLLARKF 282
 
Name Accession Description Interval E-value
PT_UbiA_1 cd13964
UbiA family of prenyltransferases (PTases), Unknown subgroup; Many characterized members of ...
 7-352 2.37e-42

UbiA family of prenyltransferases (PTases), Unknown subgroup; Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.


Pssm-ID: 260127  Cd Length: 282  Bit Score: 148.50  E-value: 2.37e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   7 LLELVRGPAVLSVPGDVVAGGSAAGTLGR---RTPALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVSPgLAL 83
Cdd:cd13964     1 YLQLVRLPNLFTVPADVLAGAALAGGGLGpvlRLALLLLASVLLYAAGMVLNDVFDAELDARERPERPIPSGRVSR-GAA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979  84 AAAAGLTGAGLAAAGLAAGRRGLAVAVPLAAAIWTYDLLAKDTPAGPAVMAACRALDVLLGACPAAGrpdsrdgtgfrgg 163
Cdd:cd13964    80 LALGAGLLAAGVALAALVGRLSGLVALLLAAAILLYDAWLKHTPLGPLLMGLCRGLNLLLGASAAAA------------- 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 164 tgfragtdsrggtgfrggtgfragtdlrdgtgfqggtgappGGGPRAWPPprtfaaalppALAVAAHTYMITSLSRREVS 243
Cdd:cd13964   147 -----------------------------------------GGLGPALLA----------ALALGVYIAGVTYIARGEVH 175

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 244 GADRLLPTATLAATAALAAGVAAAGRGRGAGRGPALqaALASWYLARFGSAQARAVADPSAPRIRGAVGTGITVLPALQG 323
Cdd:cd13964   176 GGPRRLLPLALLAVLLVIGLALALAAPRGGRVLLAL--LFLALFAAWVGRPLLRAYRDPSPPNIGKAVGAGILSLIPLDA 253

                         330       340
                  ....*....|....*....|....*....
gi 2569743979 324 ALAVRAGAVPAGLAVAVAAPLGRRLARKV 352
Cdd:cd13964   254 ALAAAFGGPALALLVLALLPLALLLARKF 282
prenyl_rel_EboC NF035940
UbiA-like protein EboC;
8-78 4.56e-11

UbiA-like protein EboC;


Pssm-ID: 468273  Cd Length: 292  Bit Score: 62.94  E-value: 4.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   8 LELVRGPAVLSVPGDVVAGGSAAGTLGRRTPALAA---------ASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:NF035940    3 LQLMRPANIVTAWADILAGFAISGFLTLTWSSAPNdisliwlllATIGLYGGGVVFNDVFDAELDAVERPERPIPSGRVS 82
ubiA PRK12882
prenyltransferase; Reviewed
 1-79 3.47e-07

prenyltransferase; Reviewed


Pssm-ID: 183811  Cd Length: 276  Bit Score: 51.13  E-value: 3.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   1 MAAVRDLLELVR-----GPAVLSVPGDVVAGGSAAGTLgrRTPALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSG 75
Cdd:PRK12882    1 GMTVRGYLELTRpvnavVAGVAAFIGAFIAGGILSSPS--LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78


                  ....
gi 2569743979  76 RVSP 79
Cdd:PRK12882   79 AVSP 82
chlor_syn_BchG TIGR01476
bacteriochlorophyll/chlorophyll synthetase; This model describes a subfamily of a large family ...
 53-78 1.23e-05

bacteriochlorophyll/chlorophyll synthetase; This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 130541  Cd Length: 283  Bit Score: 46.31  E-value: 1.23e-05
                          10        20
                  ....*....|....*....|....*.
gi 2569743979  53 AANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:TIGR01476  56 SINDYFDRDVDAINEPQRPIPSGIIS 81
UbiA COG0382
4-hydroxybenzoate polyprenyltransferase [Coenzyme transport and metabolism]; 4-hydroxybenzoate ...
 40-79 2.66e-04

4-hydroxybenzoate polyprenyltransferase [Coenzyme transport and metabolism]; 4-hydroxybenzoate polyprenyltransferase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440151  Cd Length: 280  Bit Score: 42.14  E-value: 2.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2569743979  40 LAAASVCLYWAGMAANDWADRHLDAV--ERPRRPIPSGRVSP 79
Cdd:COG0382    42 AVLGTVLMRSAGYVINDYFDREIDRIneRKPNRPLASGRISL 83
UbiA pfam01040
UbiA prenyltransferase family;
39-79 1.66e-03

UbiA prenyltransferase family;


Pssm-ID: 460038 [Multi-domain]  Cd Length: 250  Bit Score: 39.52  E-value: 1.66e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2569743979  39 ALAAASVCLYWAGMAANDWADRHLDA-VER-PRRPIPSGRVSP 79
Cdd:pfam01040  24 LALLGTVLARAAANALNDYYDRDIDAiMPRtPNRPLPSGRISP 66
 
Name Accession Description Interval E-value
PT_UbiA_1 cd13964
UbiA family of prenyltransferases (PTases), Unknown subgroup; Many characterized members of ...
 7-352 2.37e-42

UbiA family of prenyltransferases (PTases), Unknown subgroup; Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.


Pssm-ID: 260127  Cd Length: 282  Bit Score: 148.50  E-value: 2.37e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   7 LLELVRGPAVLSVPGDVVAGGSAAGTLGR---RTPALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVSPgLAL 83
Cdd:cd13964     1 YLQLVRLPNLFTVPADVLAGAALAGGGLGpvlRLALLLLASVLLYAAGMVLNDVFDAELDARERPERPIPSGRVSR-GAA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979  84 AAAAGLTGAGLAAAGLAAGRRGLAVAVPLAAAIWTYDLLAKDTPAGPAVMAACRALDVLLGACPAAGrpdsrdgtgfrgg 163
Cdd:cd13964    80 LALGAGLLAAGVALAALVGRLSGLVALLLAAAILLYDAWLKHTPLGPLLMGLCRGLNLLLGASAAAA------------- 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 164 tgfragtdsrggtgfrggtgfragtdlrdgtgfqggtgappGGGPRAWPPprtfaaalppALAVAAHTYMITSLSRREVS 243
Cdd:cd13964   147 -----------------------------------------GGLGPALLA----------ALALGVYIAGVTYIARGEVH 175

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979 244 GADRLLPTATLAATAALAAGVAAAGRGRGAGRGPALqaALASWYLARFGSAQARAVADPSAPRIRGAVGTGITVLPALQG 323
Cdd:cd13964   176 GGPRRLLPLALLAVLLVIGLALALAAPRGGRVLLAL--LFLALFAAWVGRPLLRAYRDPSPPNIGKAVGAGILSLIPLDA 253

                         330       340
                  ....*....|....*....|....*....
gi 2569743979 324 ALAVRAGAVPAGLAVAVAAPLGRRLARKV 352
Cdd:cd13964   254 ALAAAFGGPALALLVLALLPLALLLARKF 282
prenyl_rel_EboC NF035940
UbiA-like protein EboC;
8-78 4.56e-11

UbiA-like protein EboC;


Pssm-ID: 468273  Cd Length: 292  Bit Score: 62.94  E-value: 4.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   8 LELVRGPAVLSVPGDVVAGGSAAGTLGRRTPALAA---------ASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:NF035940    3 LQLMRPANIVTAWADILAGFAISGFLTLTWSSAPNdisliwlllATIGLYGGGVVFNDVFDAELDAVERPERPIPSGRVS 82
ubiA PRK12882
prenyltransferase; Reviewed
 1-79 3.47e-07

prenyltransferase; Reviewed


Pssm-ID: 183811  Cd Length: 276  Bit Score: 51.13  E-value: 3.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   1 MAAVRDLLELVR-----GPAVLSVPGDVVAGGSAAGTLgrRTPALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSG 75
Cdd:PRK12882    1 GMTVRGYLELTRpvnavVAGVAAFIGAFIAGGILSSPS--LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78


                  ....
gi 2569743979  76 RVSP 79
Cdd:PRK12882   79 AVSP 82
PT_UbiA_DGGGPS cd13961
Geranylgeranylglycerol-phosphate geranylgeranyltransferase; Digeranylgeranylglyceryl phosphate ...
 7-79 5.80e-07

Geranylgeranylglycerol-phosphate geranylgeranyltransferase; Digeranylgeranylglyceryl phosphate synthase (DGGGPS) transfers a geranylgeranyl group from geranylgeranyl diphosphate to (S)-3-O-geranylgeranylglyceryl phosphate to form (S)-2,3-di-O-geranylgeranylglyceryl phosphate, as part of the isoprenoid ether lipid biosynthesis. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


Pssm-ID: 260124  Cd Length: 270  Bit Score: 50.19  E-value: 5.80e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2569743979   7 LLELVRGP-AVLSVPGDVVAGGSAAGTLGRRTP----ALAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVSP 79
Cdd:cd13961     2 YLELIRPPnLLMAALAQYLGALFALGPLLSLNDlellLLFLSVFLIAAAGYIINDYFDVEIDRINKPDRPIPSGRISR 79
PT_UbiA_chlorophyll cd13958
Bacteriochlorophyll/chlorophyll synthetase; Chlorophyll synthase catalyzes the last step of ...
 14-78 1.70e-06

Bacteriochlorophyll/chlorophyll synthetase; Chlorophyll synthase catalyzes the last step of chlorophyll (Chl) biosynthesis, the addition of the tetraprenyl (phytyl or geranylgeranyl) side chain. In plant chloroplast, the chlorophyll synthase is located in thylakoid membrane and has been shown to also have a regulatory or channeling function. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


Pssm-ID: 260121  Cd Length: 277  Bit Score: 48.76  E-value: 1.70e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979  14 PAVLSVPGDVVAGGsaAGTLGRRTPALAAASVCLY---WAGM--AANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:cd13958    12 PPMWAFLCGAAASG--AFQWSNWDVWLLLLGMLLAgplLTGTsqTINDYYDREVDAINEPYRPIPSGRIS 79
PRK07566 PRK07566
chlorophyll synthase ChlG;
53-78 8.08e-06

chlorophyll synthase ChlG;


Pssm-ID: 236052  Cd Length: 314  Bit Score: 46.84  E-value: 8.08e-06
                          10        20
                  ....*....|....*....|....*.
gi 2569743979  53 AANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:PRK07566   83 TLNDYFDREVDAINEPYRPIPSGAIS 108
chlor_syn_BchG TIGR01476
bacteriochlorophyll/chlorophyll synthetase; This model describes a subfamily of a large family ...
 53-78 1.23e-05

bacteriochlorophyll/chlorophyll synthetase; This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 130541  Cd Length: 283  Bit Score: 46.31  E-value: 1.23e-05
                          10        20
                  ....*....|....*....|....*.
gi 2569743979  53 AANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:TIGR01476  56 SINDYFDRDVDAINEPQRPIPSGIIS 81
PT_UbiA_COQ2 cd13959
4-Hydroxybenzoate polyprenyltransferase; 4-Hydroxybenzoate polyprenyltransferase, also known ...
 50-79 2.35e-05

4-Hydroxybenzoate polyprenyltransferase; 4-Hydroxybenzoate polyprenyltransferase, also known as Coq2, catalyzes the prenylation of p-hydroxybenzoate with an all-trans polyprenyl group, an important step in ubiquinone (CoQ) biosynthesis. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


Pssm-ID: 260122 [Multi-domain]  Cd Length: 272  Bit Score: 45.15  E-value: 2.35e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2569743979  50 AGMAANDWADRHLDA-VERPR-RPIPSGRVSP 79
Cdd:cd13959    48 AGCTINDIADRDIDAkVPRTKnRPLASGAISV 79
PT_UbiA cd13956
UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA ...
 8-79 2.70e-05

UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


Pssm-ID: 260119 [Multi-domain]  Cd Length: 271  Bit Score: 45.03  E-value: 2.70e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2569743979   8 LELVRGPAVLSVPGDVVAGGSAAGTLGRRTPA----LAAASVCLYWAGMAANDWADRHLDAVERPRRPIPSGRVSP 79
Cdd:cd13956     1 LRLMRPYTLLYVLAPALAGAALAGAFAGPLPAllllALLAVFLGAGAGYALNDYTDRELDAINKPDRPLPSGRLSP 76
PLN00012 PLN00012
chlorophyll synthetase; Provisional
 23-78 3.51e-05

chlorophyll synthetase; Provisional


Pssm-ID: 215028  Cd Length: 375  Bit Score: 45.24  E-value: 3.51e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2569743979  23 VVAGGSAAGTLGRRTPALAAASVCLYWAG-------MAANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:PLN00012  104 VLCGAAASGNFHWTLEDVAKSIVCMLMSGpfltgytQTINDWYDREIDAINEPYRPIPSGAIS 166
ubiA PRK12884
prenyltransferase; Reviewed
 1-78 2.16e-04

prenyltransferase; Reviewed


Pssm-ID: 183812  Cd Length: 279  Bit Score: 42.25  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569743979   1 MAAVRDLLELVR-GPAVLSVPGDVVAGGSAAGTLGRRTPALAAASVCLY-WAGMAANDWADRHLDAVERPRRPIPSGRVS 78
Cdd:PRK12884    1 RTKMKAYLELLRpEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFAsGSANALNDYFDYEVDRINRPDRPIPSGRIS 80
UbiA COG0382
4-hydroxybenzoate polyprenyltransferase [Coenzyme transport and metabolism]; 4-hydroxybenzoate ...
 40-79 2.66e-04

4-hydroxybenzoate polyprenyltransferase [Coenzyme transport and metabolism]; 4-hydroxybenzoate polyprenyltransferase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440151  Cd Length: 280  Bit Score: 42.14  E-value: 2.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2569743979  40 LAAASVCLYWAGMAANDWADRHLDAV--ERPRRPIPSGRVSP 79
Cdd:COG0382    42 AVLGTVLMRSAGYVINDYFDREIDRIneRKPNRPLASGRISL 83
PRK09573 PRK09573
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
 8-79 7.94e-04

(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed


Pssm-ID: 181963  Cd Length: 279  Bit Score: 40.71  E-value: 7.94e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2569743979   8 LELVR-----GPAVLSVPGDVVAGGSAAGTLGRRTPALAAASVCLYwaGMAANDWADRHLDAVERPRRPIPSGRVSP 79
Cdd:PRK09573    7 FELIRpknciGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAG--GNVINDIYDIEIDKINKPERPIPSGRISL 81
PRK12392 PRK12392
bacteriochlorophyll c synthase; Provisional
 55-78 1.01e-03

bacteriochlorophyll c synthase; Provisional


Pssm-ID: 171463  Cd Length: 331  Bit Score: 40.44  E-value: 1.01e-03
                          10        20
                  ....*....|....*....|....
gi 2569743979  55 NDWADRHLDAVERPRRPIPSGRVS 78
Cdd:PRK12392   70 NDYFDLELDRVNEPTRPIPSGRLS 93
UbiA pfam01040
UbiA prenyltransferase family;
39-79 1.66e-03

UbiA prenyltransferase family;


Pssm-ID: 460038 [Multi-domain]  Cd Length: 250  Bit Score: 39.52  E-value: 1.66e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2569743979  39 ALAAASVCLYWAGMAANDWADRHLDA-VER-PRRPIPSGRVSP 79
Cdd:pfam01040  24 LALLGTVLARAAANALNDYYDRDIDAiMPRtPNRPLPSGRISP 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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