|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-231 |
7.37e-77 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 235.34 E-value: 7.37e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVG 84
Cdd:COG1131 1 IEVRGLTKRYG----DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 lALGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:COG1131 77 -YVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLIL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:COG1131 156 DEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-232 |
2.48e-62 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 198.16 E-value: 2.48e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHV 83
Cdd:COG4555 1 MIEVENLSKKYG----KVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 GLaLGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLL 163
Cdd:COG4555 77 GV-LPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 164 LDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:COG4555 156 LDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
9-222 |
8.35e-57 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 182.80 E-value: 8.35e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGerafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGlALG 88
Cdd:cd03268 5 DLTKTYGKK----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS-YQKNIEALRRIG-ALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 89 GDSGFYPRASARDNLLFFADVAGVsgrsRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:cd03268 79 EAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 169 NGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
21-322 |
1.03e-55 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 183.36 E-value: 1.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLaLGGDSGFYPRASAR 100
Cdd:TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGI-VPQYASVDEDLTGR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 181 TLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGiaaTTVVQVEATATEGLDTLRGFLGera 260
Cdd:TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG---KDTLESRPRDIQSLKVEVSMLI--- 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 261 aVLFAPRGSGwELTLYWHGERTTFEAGEAHRILAEGLAA---SNIGARTEPYTRPaTLEEAYLAM 322
Cdd:TIGR01188 239 -AELGETGLG-LLAVTVDSDRIKILVPDGDETVPEIVEAairNGIRIRSISTERP-SLDDVFLKL 300
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-218 |
1.25e-52 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 171.04 E-value: 1.25e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVG 84
Cdd:cd03230 1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LaLGGDSGFYPRASARDNLlffadvagvsgrsrrrevdhalarveltdaaarpfqEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03230 77 Y-LPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-227 |
2.46e-51 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 169.09 E-value: 2.46e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVG 84
Cdd:cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LaLGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03265 77 I-VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:cd03265 156 DEPTIGLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
23-222 |
1.31e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 166.98 E-value: 1.31e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGeIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLaLGGDSGFYPRASARDN 102
Cdd:cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY-LPQEFGVYPNFTVREF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2538311617 183 IRSLAEDgAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03264 173 LSELGED-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-222 |
1.28e-48 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 162.15 E-value: 1.28e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVG 84
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGGDsGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03266 82 FVSDST-GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-325 |
7.30e-47 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 159.89 E-value: 7.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiaHP--QRARR 81
Cdd:COG4152 1 MLELKGLTKRFGD----KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDG-----EPldPEDRR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 82 HVGLaLGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPAL 161
Cdd:COG4152 72 RIGY-LPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 162 LLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGiaaTTVVQV 241
Cdd:COG4152 151 LILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFG---RNTLRL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 242 EATATEgldtlrGFLGERAAVLFA-PRGSGWELTLYwhgerttfEAGEAHRILAEGLAASNIgarTEPYTRPATLEEAYL 320
Cdd:COG4152 228 EADGDA------GWLRALPGVTVVeEDGDGAELKLE--------DGADAQELLRALLARGPV---REFEEVRPSLNEIFI 290
|
....*
gi 2538311617 321 AMAEG 325
Cdd:COG4152 291 EVVGE 295
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
10-223 |
6.67e-45 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 152.66 E-value: 6.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGEraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGG 89
Cdd:cd03263 6 LTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 90 DSgFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:cd03263 84 DA-LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 170 GLDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:cd03263 163 GLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-222 |
5.55e-43 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 147.43 E-value: 5.55e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiaHPQ--RARRH 82
Cdd:cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-----KPLdiAARNR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGLaLGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:cd03269 72 IGY-LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
5-224 |
3.47e-41 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 142.92 E-value: 3.47e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGerafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiaHP--QRARRH 82
Cdd:TIGR03740 1 LETKNLSKRFGKQ----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-----HPwtRKDLHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGlALGGDSGFYPRASARDNLLFFADVAGVSgRSRRREVdhaLARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:TIGR03740 72 IG-SLIESPPLYENLTARENLKVHTTLLGLP-DSRIDEV---LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSL 224
Cdd:TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-212 |
1.27e-39 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 138.38 E-value: 1.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGtGERAFtavDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHV 83
Cdd:COG4133 2 MLEAENLSCRRG-ERLLF---SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 GLaLGGDSGFYPRASARDNLLFFADVAGVSGRsrRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLL 163
Cdd:COG4133 78 AY-LGHADGLKPELTVRENLRFWAALYGLRAD--REAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 164 LDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDlAHTITV 212
Cdd:COG4133 155 LDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHQPLELAA-ARVLDL 202
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
22-231 |
1.85e-38 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 135.92 E-value: 1.85e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHVGLAlggdsgF-YPrasa 99
Cdd:COG1122 15 PALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDiTKKNLRELRRKVGLV------FqNP---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 rDNLLFFA----DVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:COG1122 85 -DDQLFAPtveeDVAfgpenlGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:COG1122 164 GLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-198 |
3.04e-37 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 132.61 E-value: 3.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----- 79
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKElaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGLALGgdsgFY---PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALL 156
Cdd:cd03255 81 RRHIGFVFQ----SFnllPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSH 198
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNkEAGTTIVVVTH 199
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-230 |
6.57e-37 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 132.18 E-value: 6.57e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVG 84
Cdd:cd03219 1 LEVRGLTKRFG----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGgdsgF-----YPRASARDNLL----------FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRL 149
Cdd:cd03219 77 IGRT----FqiprlFPELTVLENVMvaaqartgsgLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 150 HIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
.
gi 2538311617 230 H 230
Cdd:cd03219 233 N 233
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-230 |
1.85e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 129.00 E-value: 1.85e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQR 78
Cdd:COG0411 1 SDPLLEVRGLTKRFG----GLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGrdITGLPPHRI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 79 ARRhvGLA-------LggdsgfYPRASARDNLL----------FFADVAGVSGRSR-----RREVDHALARVELTDAAAR 136
Cdd:COG0411 77 ARL--GIArtfqnprL------FPELTVLENVLvaaharlgrgLLAALLRLPRARReereaRERAEELLERVGLADRADE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 137 PFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGA 215
Cdd:COG0411 149 PAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLrDERGITILLIEHDMDLVMGLADRIVVLDF 228
|
250
....*....|....*
gi 2538311617 216 GSVAVSGSLEDIAAH 230
Cdd:COG0411 229 GRVIAEGTPAEVRAD 243
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-198 |
7.57e-35 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 126.70 E-value: 7.57e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQR 78
Cdd:COG1136 1 MSPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGqdISSLSEREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 79 A---RRHVGLALggdSGFY--PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTD-AAARPfQEFSRGMKQRLHIA 152
Cdd:COG1136 81 ArlrRRHIGFVF---QFFNllPELTALENVALPLLLAGVSRKERRERARELLERVGLGDrLDHRP-SQLSGGQQQRVAIA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2538311617 153 RALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSH 198
Cdd:COG1136 157 RALVNRPKLILADEPTGNLDSKTGEEVLELLRELNrELGTTIVMVTH 203
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
10-215 |
1.29e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 125.66 E-value: 1.29e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiAHPQRARRHVGLALGG 89
Cdd:cd03293 6 VSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRGYVFQQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 90 DSGFyPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAA-ARPFQeFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:cd03293 82 DALL-PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEnAYPHQ-LSGGMRQRVALARALAVDPDVLLLDEPF 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2538311617 169 NGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGA 215
Cdd:cd03293 160 SALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-242 |
1.79e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 131.56 E-value: 1.79e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGT-GERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA--- 79
Cdd:COG1123 260 LLEVRNLSKRYPVrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSlre 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 -RRHVGLAL-GGDSGFYPRASARDNLLFFADVAGV-SGRSRRREVDHALARVEL-TDAAARPFQEFSRGMKQRLHIARAL 155
Cdd:COG1123 340 lRRRVQMVFqDPYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 156 LGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH---- 230
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANpqhp 499
|
250
....*....|....*
gi 2538311617 231 ---AGIAATTVVQVE 242
Cdd:COG1123 500 ytrALLAAVPSLDPA 514
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
22-219 |
4.66e-34 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 124.18 E-value: 4.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINA------IAH-PQRA----------RRHVG 84
Cdd:cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLekerkrIGYvPQRRsidrdfpisvRDVVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGGDSGFYPRASARDnllffadvagvsgrsrRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03235 93 MGLYGHKGLFRRLSKAD----------------KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
10-216 |
2.29e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 122.83 E-value: 2.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGG 89
Cdd:cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 90 DSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:cd03267 103 KTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2538311617 170 GLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:cd03267 183 GLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
10-230 |
2.90e-32 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 119.99 E-value: 2.90e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQR--ARRHVGL 85
Cdd:cd03258 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGtdLTLLSGKELrkARRRIGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 ALGGDSGFYPRaSARDNLLFFADVAGVSGRSRRREVDHALARVELTDAA-ARPFQeFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03258 87 IFQHFNLLSSR-TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAdAYPAQ-LSGGQKQRVGIARALANNPKVLLC 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:cd03258 165 DEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-230 |
3.31e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 125.40 E-value: 3.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPT---SGTLTVNGINAIAHPQ 77
Cdd:COG1123 1 MTPLLEVRDLSVRYPGGDV--PAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 78 RAR-RHVGLAL-GGDSGFYPrASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARAL 155
Cdd:COG1123 79 ALRgRRIGMVFqDPMTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 156 LGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
22-256 |
1.63e-31 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 119.91 E-value: 1.63e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGGDSgFYPRASARD 101
Cdd:PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN-LDPDFTVRE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRT 181
Cdd:PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 182 LIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGslediAAHAGIAATTVVQVEATATEGLDTLRGFL 256
Cdd:PRK13537 180 RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG-----APHALIESEIGCDVIEIYGPDPVALRDEL 249
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
19-230 |
2.25e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 119.81 E-value: 2.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 19 RAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaiahPQRAR----RHVGLALGGDSGFY 94
Cdd:COG4586 33 REVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYV----PFKRRkefaRRIGVVFGQRSQLW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPD 174
Cdd:COG4586 109 WDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVV 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 175 IALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG4586 189 SKEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
22-236 |
3.94e-31 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 117.11 E-value: 3.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiAHPQRARRHVG----------------- 84
Cdd:COG1121 20 PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG----KPPRRARRRIGyvpqraevdwdfpitvr 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 --LALG--GDSGFYPRASARDnllffadvagvsgrsrRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPA 160
Cdd:COG1121 96 dvVLMGryGRRGLFRRPSRAD----------------REAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPD 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 161 LLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAvSGSLEDIAAHAGIAAT 236
Cdd:COG1121 160 LLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVA-HGPPEEVLTPENLSRA 234
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
5-219 |
4.35e-31 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 116.46 E-value: 4.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVG 84
Cdd:cd03259 1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD-VTGVPPERRNIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 L-----ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSP 159
Cdd:cd03259 76 MvfqdyAL------FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 160 ALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:cd03259 150 SLLLLDEPLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
5-230 |
1.21e-30 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 115.72 E-value: 1.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGerafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP--QRARRH 82
Cdd:cd03218 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPmhKRARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGLaLGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:cd03218 77 IGY-LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
24-169 |
2.88e-30 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 112.36 E-value: 2.88e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRaRRHVGLaLGGDSGFYPRASARD 101
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGqdLTDDERKSL-RKEIGY-VFQDPQLFPRLTVRE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 102 NLLFFADVAGVSGRSRRREVDHALARVELTDAAARP----FQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:pfam00005 79 NLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
4-216 |
8.20e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 114.03 E-value: 8.20e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiAHPQRARRHV 83
Cdd:COG1116 7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTGPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 GL-----ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAA-ARPFQeFSRGMKQRLHIARALLG 157
Cdd:COG1116 83 GVvfqepAL------LPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEdAYPHQ-LSGGMRQRVAIARALAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 158 SPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:COG1116 156 DPEVLLMDEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
22-218 |
8.37e-30 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 112.89 E-value: 8.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----RRHVGLALGgDSGFYPRA 97
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAipylRRKIGVVFQ-DFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 178 TVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03292 174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
10-230 |
1.05e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 115.56 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQmCSTLL-TPTSGTLTVNGINAIAHPQR----ARRHVG 84
Cdd:COG1135 7 LSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIR-CINLLeRPTSGSVLVDGVDLTALSERelraARRKIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 L-----ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTD-AAARPFQeFSRGMKQRLHIARALLGS 158
Cdd:COG1135 86 MifqhfNL------LSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDkADAYPSQ-LSGGQKQRVGIARALANN 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 159 PALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG1135 159 PKVLLCDEATSALDPETTRSILDLLKDInRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFAN 231
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
22-216 |
4.18e-29 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 109.97 E-value: 4.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN---AIAHPQRARRHVGLALgGDSGFYPRAS 98
Cdd:cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDltdLEDELPPLRRRIGMVF-QDFALFPHLT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFfadvaGVSGrsrrrevdhalarveltdaaarpfqefsrGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:cd03229 93 VLENIAL-----GLSG-----------------------------GQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 179 VRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:cd03229 139 VRALLKSLqAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
24-222 |
1.41e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 112.62 E-value: 1.41e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGGDSgFYPRASARDNL 103
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN-LDLEFTVRENL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLI 183
Cdd:PRK13536 136 LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 184 RSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:PRK13536 216 RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
9-216 |
2.53e-28 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 108.71 E-value: 2.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGERAftAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLAl 87
Cdd:cd03225 4 NLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKElRRKVGLV- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 88 ggdsgF-YPrasarDNLLF----FADVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALL 156
Cdd:cd03225 81 -----FqNP-----DDQFFgptvEEEVAfglenlGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
22-229 |
2.60e-28 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 109.67 E-value: 2.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP--QRARRHVGLaLGGDSGFYPRASA 99
Cdd:TIGR04406 15 KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPmhERARLGIGY-LPQEASIFRKLTV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSGRSRRREVDHAL-ARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:TIGR04406 94 EENIMAVLEIRKDLDRAEREERLEALlEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVGD 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 179 VRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:TIGR04406 174 IKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
10-230 |
3.63e-28 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 109.40 E-value: 3.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinAIAHPqrarrhvgLALGG 89
Cdd:COG1134 28 LLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG--RVSAL--------LELGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 90 dsGFYPRASARDNLLFFADVAGVSgrsrRREVDHALARV----ELTDAAARPFQEFSRGMKQRLHIARALLgspalllld 165
Cdd:COG1134 98 --GFHPELTGRENIYLNGRLLGLS----RKEIDEKFDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATA--------- 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 166 eptngLDPDI-----ALTV---------RTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG1134 163 -----VDPDIllvdeVLAVgdaafqkkcLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
22-230 |
1.17e-27 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 107.81 E-value: 1.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP--QRARRhvGLalggdsGFYP---- 95
Cdd:COG1137 17 TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPmhKRARL--GI------GYLPqeas 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 ---RASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:COG1137 89 ifrKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAGVD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 173 P----DIaltvRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG1137 169 PiavaDI----QKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNN 226
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
9-198 |
5.07e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 105.90 E-value: 5.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----RRHVG 84
Cdd:COG2884 6 NVSKRYPGG---REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipylRRRIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGgDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:COG2884 83 VVFQ-DFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLA 161
|
170 180 190
....*....|....*....|....*....|....
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:COG2884 162 DEPTGNLDPETSWEIMELLEEINRRGTTVLIATH 195
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-221 |
9.00e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 103.28 E-value: 9.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRhv 83
Cdd:cd03216 1 LELRGITKRFG----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEvSFASPRDARR-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 glalggdsgfyprasardnllffadvAGVsgrsrrrevdhalARVeltdaaarpFQeFSRGMKQRLHIARALLGSPALLL 163
Cdd:cd03216 75 --------------------------AGI-------------AMV---------YQ-LSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 164 LDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVS 221
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
9-227 |
1.20e-26 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 105.01 E-value: 1.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGL--- 85
Cdd:cd03300 5 NVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD-ITNLPPHKRPVNTvfq 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 --ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLL 163
Cdd:cd03300 80 nyAL------FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 164 LDEPTNGLD----PDIALTVRTLIRSLaedGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:cd03300 154 LDEPLGALDlklrKDMQLELKRLQKEL---GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
9-230 |
1.87e-26 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 104.69 E-value: 1.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA-HPQRARRHVGLAL 87
Cdd:cd03295 5 NVTKRYGGG---KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKIGYVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 88 gGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDA--AARPFQEFSRGMKQRLHIARALLGSPALLLLD 165
Cdd:cd03295 82 -QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 166 EPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-227 |
1.88e-26 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 105.13 E-value: 1.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSriFGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARR 81
Cdd:COG1120 1 MLEAENLS--VGYGGR--PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGrdLASLSRRELARR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 82 hVGL---ALGGDSGFypraSARDNLLF--FADVAGVSGRSR--RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARA 154
Cdd:COG1120 77 -IAYvpqEPPAPFGL----TVRELVALgrYPHLGLFGRPSAedREAVEEALERTGLEHLADRPVDELSGGERQRVLIARA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 155 LLGSPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHllgeieDL------AHTITVLGAGSVAVSGSLEDI 227
Cdd:COG1120 152 LAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLArERGRTVVMVLH------DLnlaaryADRLVLLKDGRIVAQGPPEEV 225
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-218 |
2.26e-26 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 104.12 E-value: 2.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHV 83
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 GLALG-----GDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAAR----PFQeFSRGMKQRLHIARA 154
Cdd:cd03257 81 RKEIQmvfqdPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlnryPHE-LSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 155 LLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-226 |
4.57e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 104.04 E-value: 4.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSriFGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARR- 81
Cdd:COG4559 2 LEAENLS--VRLGGR--TLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGrpLAAWSPWELARRr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 82 -----HVGLA----------LGGDSGFYPRAsardnllffadvagvsgrSRRREVDHALARVELTDAAARPFQEFSRGMK 146
Cdd:COG4559 78 avlpqHSSLAfpftveevvaLGRAPHGSSAA------------------QDRQIVREALALVGLAHLAGRSYQTLSGGEQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 147 QRLHIARALLGSPALLLL-------DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHllgeieDL------AHTITVL 213
Cdd:COG4559 140 QRVQLARVLAQLWEPVDGgprwlflDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLH------DLnlaaqyADRILLL 213
|
250
....*....|...
gi 2538311617 214 GAGSVAVSGSLED 226
Cdd:COG4559 214 HQGRLVAQGTPEE 226
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
23-283 |
5.14e-26 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 105.97 E-value: 5.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVqMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGGDSGFYPRASARDN 102
Cdd:NF000106 28 AVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HRPVR*GRRESFSGREN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:NF000106 107 LYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 183 IRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIA------------AHA----------------GIA 234
Cdd:NF000106 187 VRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKtkvggrtlqirpAHAaeldrmvgaiaqagldGIA 266
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 235 ATT------VVQVEATATEGLDTLRGFLGERAAVLFA---PRGSGWELTLYWHGERTT 283
Cdd:NF000106 267 GATadhedgVVNVPIVSDEQLSAVVGMLGERGFTISGhqhPSAQL*EVFLAITGQKTS 324
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
22-216 |
7.74e-26 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 100.78 E-value: 7.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHVGLAlggdsgfyprasar 100
Cdd:cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDiAKLPLEELRRRIGYV-------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 dnllffadvagvsgrsrrrevdhalarveltdaaarpFQeFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:cd00267 79 -------------------------------------PQ-LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120
|
170 180 190
....*....|....*....|....*....|....*.
gi 2538311617 181 TLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:cd00267 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
14-222 |
2.37e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 100.20 E-value: 2.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRhvgLALggds 91
Cdd:cd03214 7 VGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGkdLASLSPKELARK---IAY---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 92 gfyprasardnllffadvagvsgrsrrreVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:cd03214 78 -----------------------------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 172 DPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03214 129 DIAHQIELLELLRRLArERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
23-198 |
2.41e-25 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 100.58 E-value: 2.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQR----ARRHVGLALGG--DSGFYPR 96
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG-EPLDYSRKglleRRQRVGLVFQDpdDQLFAAD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 AsardnllfFADVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:TIGR01166 86 V--------DQDVAfgplnlGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157
|
170 180
....*....|....*....|....*...
gi 2538311617 171 LDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-207 |
9.82e-25 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 100.13 E-value: 9.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP----QRA 79
Cdd:COG3638 2 MLELRNLSKRYPGG---TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgralRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGLAlggdsgF-----YPRASARDNLL--------FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMK 146
Cdd:COG3638 79 RRRIGMI------FqqfnlVPRLSVLTNVLagrlgrtsTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQ 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHLLgeieDLA 207
Cdd:COG3638 153 QRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIArEDGITVVVNLHQV----DLA 210
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
21-229 |
2.10e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 99.42 E-value: 2.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP--QRARRHVG-------------- 84
Cdd:COG4674 23 FKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDehEIARLGIGrkfqkptvfeeltv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 -----LALGGDSGFYPrasardnLLFFadvaGVSGRSRRReVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSP 159
Cdd:COG4674 103 fenleLALKGDRGVFA-------SLFA----RLTAEERDR-IEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDP 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 160 ALLLLDEPTNGLDPdiALTVRT--LIRSLAEDgAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:COG4674 171 KLLLLDEPVAGMTD--AETERTaeLLKSLAGK-HSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQA 239
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
27-216 |
2.66e-24 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 97.96 E-value: 2.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIaHPQRARRHVGL-----ALGGDSgfyprasA 99
Cdd:COG4619 19 VSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGkpLSAM-PPPEWRRQVAYvpqepALWGGT-------V 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFfadVAGVSGRSRRRE-VDHALARVELT-DAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:COG4619 91 RDNLPF---PFQLRERKFDRErALELLERLGLPpDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTR 167
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2538311617 178 TVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:COG4619 168 RVEELLREYlAEEGRAVLWVSHDPEQIERVADRVLTLEAG 207
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-216 |
2.72e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 99.55 E-value: 2.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSlVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQrAR 80
Cdd:COG4525 1 MS-MLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDG-VPVTGPG-AD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 RHVGLAlggDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPA 160
Cdd:COG4525 78 RGVVFQ---KDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 161 LLLLDEPTNGLDpdiALT---VRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:COG4525 155 FLLMDEPFGALD---ALTreqMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVMSPG 211
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
22-227 |
4.04e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 98.62 E-value: 4.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSG-TLTVNG-------INAIahpqraRRHVGL---ALGGD 90
Cdd:COG1119 17 TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGerrggedVWEL------RKRIGLvspALQLR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 91 sgFYPRASARDNLL--FFadvaGVSGRSR------RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:COG1119 91 --FPRDETVLDVVLsgFF----DSIGLYReptdeqRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGA-AVLLTSHllgEIEDLAHTIT---VLGAGSVAVSGSLEDI 227
Cdd:COG1119 165 ILDEPTAGLDLGARELLLALLDKLAAEGApTLVLVTH---HVEEIPPGIThvlLLKDGRVVAAGPKEEV 230
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
10-227 |
4.52e-24 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 98.41 E-value: 4.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----RRHVGL 85
Cdd:cd03256 6 LSKTYPNG---KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrqlRRQIGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 aLGGDSGFYPRASARDNLL--------FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLG 157
Cdd:cd03256 83 -IFQQFNLIERLSVLENVLsgrlgrrsTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 158 SPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINrEEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-218 |
5.56e-24 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 102.03 E-value: 5.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRA 79
Cdd:COG3845 2 MPPALELRGITKRFG----GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPvRIRSPRDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRH-VG-----------------LALG---GDSGFYPRASARDNLLFFADVAGVsgrsrrrEVDhALARVEltdaaarpf 138
Cdd:COG3845 78 IALgIGmvhqhfmlvpnltvaenIVLGlepTKGGRLDRKAARARIRELSERYGL-------DVD-PDAKVE--------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 139 qEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:COG3845 141 -DLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
16-229 |
9.28e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 97.12 E-value: 9.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 16 TGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRHVGLALGGDSGF 93
Cdd:cd03224 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGrdITGLPPHERARAGIGYVPEGRRIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 yPRASARDNLLffadVAGvsGRSRRREVDHALARV-----ELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:cd03224 88 -PELTVEENLL----LGA--YARRRAKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 169 NGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-227 |
1.19e-23 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 99.45 E-value: 1.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDaaQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA--HPQr 78
Cdd:COG1118 1 MSIEVR--NISKRFG----SFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTnlPPR- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 79 aRRHVGL-----ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAAR-PFQeFSRGMKQRLHIA 152
Cdd:COG1118 74 -ERRVGFvfqhyAL------FPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRyPSQ-LSGGQRQRVALA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 153 RALLGSPALLLLDEPTNGLDPDIALTVRT-LIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:COG1118 146 RALAVEPEVLLLDEPFGALDAKVRKELRRwLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
9-227 |
1.48e-23 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 97.71 E-value: 1.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGT-GERAFT-------------------AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN 68
Cdd:cd03294 5 GLYKIFGKnPQKAFKllakgkskeeilkktgqtvGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 69 G--INAIAHPQ-RARRHVGLALGGDS-GFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRG 144
Cdd:cd03294 85 GqdIAAMSRKElRELRRKKISMVFQSfALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 145 MKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:cd03294 165 MQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGT 244
|
....
gi 2538311617 224 LEDI 227
Cdd:cd03294 245 PEEI 248
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
9-222 |
1.68e-23 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 96.45 E-value: 1.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinAIAHPqrarrhvgLALG 88
Cdd:cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--RVSSL--------LGLG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 89 GdsGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLgspalllldept 168
Cdd:cd03220 93 G--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATA------------ 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 169 ngLDPDI-----ALTV---------RTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03220 159 --LEPDIllideVLAVgdaafqekcQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
22-211 |
1.74e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 95.38 E-value: 1.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAH-PQR----------ARRHVGLALGGD 90
Cdd:NF040873 6 PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYvPQRsevpdslpltVRDLVAMGRWAR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 91 SGFYPRASARDnllffadvagvsgrsrRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:NF040873 86 RGLWRRLTRDD----------------RAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 171 LDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTIT 211
Cdd:NF040873 150 LDAESRERIIALLAEEHARGATVVVVTHDLELVRRADPCVL 190
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
5-227 |
1.92e-23 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 98.63 E-value: 1.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAhPQRarRH 82
Cdd:COG3842 6 LELENVSKRYGD----VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGrdVTGLP-PEK--RN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGL-----ALggdsgFyPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLG 157
Cdd:COG3842 79 VGMvfqdyAL-----F-PHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 158 SPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:COG3842 153 EPRVLLLDEPLSALDAKLREEMREELRRLqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-236 |
6.42e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 95.26 E-value: 6.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGInAIAHPQRA--RRH 82
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGR-PVTRRRRKafRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGLaLGGD--SGFYPRASARDNLlffADVAGVSGRSRR-REVDHALARVELTDAAARPF-QEFSRGMKQRLHIARALLGS 158
Cdd:COG1124 81 VQM-VFQDpyASLHPRHTVDRIL---AEPLRIHGLPDReERIAELLEQVGLPPSFLDRYpHQLSGGQRQRVAIARALILE 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 159 PALLLLDEPTNGLDPDI-ALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAAT 236
Cdd:COG1124 157 PELLLLDEPTSALDVSVqAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPYT 235
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-227 |
8.05e-23 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 98.55 E-value: 8.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRH 82
Cdd:COG1129 4 LLEMRGISKSFG----GVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPvRFRSPRDAQAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 -VG-----LALggdsgfYPRASARDNlLFFADVAGVSG----RSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIA 152
Cdd:COG1129 80 gIAiihqeLNL------VPNLSVAEN-IFLGREPRRGGlidwRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 153 RALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:COG1129 153 RALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
22-229 |
9.64e-23 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 94.96 E-value: 9.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN--GINAIAHPQRARRHVGLaLGGDSGFYPRASA 99
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDdeDISLLPLHARARRGIGY-LPQEASIFRRLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADV-AGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:PRK10895 96 YDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 179 VRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:PRK10895 176 IKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
16-218 |
1.08e-22 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 93.86 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 16 TGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAiahPQRARRHVGLALGGDSGFYP 95
Cdd:cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVMQDVDYQL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 -RASARDNLLFFADVAGVSGRsrrrEVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPD 174
Cdd:cd03226 85 fTDSVREELLLGLKELDAGNE----QAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2538311617 175 IALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03226 161 NMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
28-222 |
1.91e-22 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 93.13 E-value: 1.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 28 SLRIS---SGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-------INAIAHPQRarRHVGLaLGGDSGFYPRA 97
Cdd:cd03297 14 TLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsrKKINLPPQQ--RKIGL-VFQQYALFPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVAgvSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:cd03297 91 NVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2538311617 178 TVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03297 169 QLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-230 |
2.05e-22 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 93.94 E-value: 2.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLdaAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRaR 80
Cdd:cd03296 1 MSIEV--RNVSKRFG----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ-E 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 RHVGL-----ALggdsgfYPRASARDNLLFFADVAGVSGRSR----RREVDHALARVELTDAAARPFQEFSRGMKQRLHI 151
Cdd:cd03296 74 RNVGFvfqhyAL------FRHMTVFDNVAFGLRVKPRSERPPeaeiRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 152 ARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-230 |
3.36e-22 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 94.73 E-value: 3.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTP---TSGTLTVNGINAIAHPQRAR 80
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 RHVglaLGGD---------SGFYPRASARDnllFFADVA----GVSGRSRRREVDHALARVELTDAAAR----PFQeFSR 143
Cdd:COG0444 81 RKI---RGREiqmifqdpmTSLNPVMTVGD---QIAEPLrihgGLSKAEARERAIELLERVGLPDPERRldryPHE-LSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 144 GMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGRIVEEG 233
|
....*...
gi 2538311617 223 SLEDIAAH 230
Cdd:COG0444 234 PVEELFEN 241
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
22-226 |
4.34e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 93.30 E-value: 4.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARR------HVGL-------- 85
Cdd:PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGrpLADWSPAELARRravlpqHSSLsfpftvee 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 --ALGGdsgfYPRASARDNLlffadvagvsgrsrRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLL 163
Cdd:PRK13548 96 vvAMGR----APHGLSRAED--------------DALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 164 L------DEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHllgeieDL------AHTITVLGAGSVAVSGSLED 226
Cdd:PRK13548 158 PprwlllDEPTSALDLAHQHHVLRLARQLAhERGLAVIVVLH------DLnlaaryADRIVLLHQGRLVADGTPAE 227
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
9-230 |
4.52e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 94.87 E-value: 4.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP----QRARRHVG 84
Cdd:PRK11153 6 NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSekelRKARRQIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALggdSGFYPRAS--ARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:PRK11153 86 MIF---QHFNLLSSrtVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:PRK11153 163 LCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
21-227 |
4.79e-22 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 92.63 E-value: 4.79e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLL-----TPTSGTLTVNGINAIA---HPQRARRHVGLALGGDSG 92
Cdd:cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDldvDVLELRRRVGMVFQKPNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 93 FypRASARDNLLFFADVAGVSGRSRRRE-VDHALARVELTDAAARPFQ--EFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:cd03260 93 F--PGSIYDNVAYGLRLHGIKLKEELDErVEEALRKAALWDEVKDRLHalGLSGGQQQRLCLARALANEPEVLLLDEPTS 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:cd03260 171 ALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
22-227 |
4.89e-22 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 92.85 E-value: 4.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGI--NAIAHPQRA-RRHVGLALggdSGFY--PR 96
Cdd:PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLkvNDPKVDERLiRQEAGMVF---QQFYlfPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLFFA-DVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDI 175
Cdd:PRK09493 92 LTALENVMFGPlRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 176 ALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK09493 172 RHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
17-198 |
6.31e-22 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 91.27 E-value: 6.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 17 GERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaiAHPQRARRHVGLA-LGGDSGFYP 95
Cdd:TIGR01189 11 GER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTP--LAEQRDEPHENILyLGHLPGLKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 RASARDNLLFFADVagvsGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDI 175
Cdd:TIGR01189 87 ELSALENLHFWAAI----HGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAG 162
|
170 180
....*....|....*....|...
gi 2538311617 176 ALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:TIGR01189 163 VALLAGLLRAHLARGGIVLLTTH 185
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
20-241 |
1.14e-21 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 92.51 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 20 AFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP----QRARRHVGLAlggdsgF-Y 94
Cdd:TIGR04521 17 EKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKkkklKDLRKKVGLV------FqF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PrasarDNLLF----FADVA------GVSGRSRRREVDHALARVELTDA-AAR-PFqEFSRGMKQRLHIARALLGSPALL 162
Cdd:TIGR04521 91 P-----EHQLFeetvYKDIAfgpknlGLSEEEAEERVKEALELVGLDEEyLERsPF-ELSGGQMRRVAIAGVLAMEPEVL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA------GIAA 235
Cdd:TIGR04521 165 ILDEPTAGLDPKGRKEILDLFKRLHkEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVdelekiGLDV 244
|
....*.
gi 2538311617 236 TTVVQV 241
Cdd:TIGR04521 245 PEITEL 250
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
20-235 |
1.93e-21 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 90.81 E-value: 1.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 20 AFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRHVGLALGGDSGFyPRA 97
Cdd:COG0410 15 GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGedITGLPPHRIARLGIGYVPEGRRIF-PSL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLffadvAGVSGRSRRREVDHALARV-----ELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:COG0410 94 TVEENLL-----LGAYARRDRAEVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 173 PDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:COG0410 169 PLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVRE 231
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
23-227 |
3.11e-21 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 91.34 E-value: 3.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAI--AHPQRARRHVGLALGG-DSGFYpRASA 99
Cdd:TIGR04520 17 ALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLdeENLWEIRKKVGMVFQNpDNQFV-GATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDnllffaDVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:TIGR04520 96 ED------DVAfglenlGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 174 DIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEdLAHTITVLGAGSVAVSGSLEDI 227
Cdd:TIGR04520 170 KGRKEVLETIRKLnKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEGTPREI 223
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
25-229 |
4.55e-21 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 90.04 E-value: 4.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 25 DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRA--RRHVGL-----ALGGDSgfyp 95
Cdd:COG1127 22 DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGqdITGLSEKELYelRRRIGMlfqggALFDSL---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 raSARDNLLFFADVAGVSGRSRRRE-VDHALARVELTDAAARPFQEFSRGMKQRLHIARAllgspallllDEPTNGLDPD 174
Cdd:COG1127 98 --TVFENVAFPLREHTDLSEAEIRElVLEKLELVGLPGAADKMPSELSGGMRKRVALARAlaldpeillyDEPTAGLDPI 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 175 IALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:COG1127 176 TSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-232 |
7.14e-21 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 93.54 E-value: 7.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIF-GTGErafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRH 82
Cdd:TIGR01257 1937 ILRLNELTKVYsGTSS---PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 VGLALGGDSgFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:TIGR01257 2014 MGYCPQFDA-IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
27-231 |
7.16e-21 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 89.48 E-value: 7.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAI----AHPQRARRHVGLALGgDSGFYPRASARDN 102
Cdd:cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLRRRMGMLFQ-SGALFDSLTVFEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSGRSRRRE-VDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPdIALTVRT 181
Cdd:cd03261 98 VAFPLREHTRLSEEEIREiVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVID 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 182 -LIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:cd03261 177 dLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
10-223 |
1.11e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 93.15 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTGERAftAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGG 89
Cdd:TIGR01257 934 LVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 90 DSGFYPRASArDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:TIGR01257 1012 NILFHHLTVA-EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 170 GLDP-------DIALTVRTlirslaedGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:TIGR01257 1091 GVDPysrrsiwDLLLKYRS--------GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-247 |
2.34e-20 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 91.27 E-value: 2.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGtGERAFTAVDrVSLRisSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRAR 80
Cdd:PRK15439 8 APPLLCARSISKQYS-GVEVLKGID-FTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG-NPCARLTPAK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 RH-VGLAL-GGDSGFYPRASARDNLLFfaDVAGVSGRSRRREVDHALARVELT-DAAARPFQEFSRgmkQRLHIARALLG 157
Cdd:PRK15439 83 AHqLGIYLvPQEPLLFPNLSVKENILF--GLPKRQASMQKMKQLLAALGCQLDlDSSAGSLEVADR---QIVEILRGLMR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 158 SPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAATT 237
Cdd:PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAIT 237
|
250
....*....|
gi 2538311617 238 VVQVEATATE 247
Cdd:PRK15439 238 PAAREKSLSA 247
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
27-204 |
2.39e-20 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 88.15 E-value: 2.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRARRHVGLALGGDSG-------FYPRASA 99
Cdd:COG4161 21 INLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAG-HQFDFSQKPSEKAIRLLRQKVGmvfqqynLWPHLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFF-ADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:COG4161 100 MENLIEApCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
|
170 180
....*....|....*....|....*.
gi 2538311617 179 VRTLIRSLAEDGAAVLLTSHllgEIE 204
Cdd:COG4161 180 VVEIIRELSQTGITQVIVTH---EVE 202
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
10-210 |
2.65e-20 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 87.20 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 10 LSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA---RRHVGLA 86
Cdd:cd03262 6 LHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNInelRQKVGMV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 87 lggdsgF-----YPRASARDNLLFfADVAgVSGRSRRREVDHA---LARVELTD-AAARPfQEFSRGMKQRLHIARALLG 157
Cdd:cd03262 82 ------FqqfnlFPHLTVLENITL-APIK-VKGMSKAEAEERAlelLEKVGLADkADAYP-AQLSGGQQQRVAIARALAM 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 158 SPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTI 210
Cdd:cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV 205
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
22-236 |
2.68e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 90.67 E-value: 2.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLALGGDS---GFYPRA 97
Cdd:PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAaSRRVASVPQDTSlsfEFDVRQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 178 TVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAAT 236
Cdd:PRK09536 177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
2-227 |
3.63e-20 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 89.75 E-value: 3.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 2 SLVLDaaQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAhPQra 79
Cdd:COG3839 3 SLELE--NVSKSYG----GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGrdVTDLP-PK-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGL-----ALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARA 154
Cdd:COG3839 74 DRNIAMvfqsyAL------YPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 155 LLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:COG3839 148 LVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
27-198 |
6.94e-20 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 86.99 E-value: 6.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTV--NGINAIAHPQ-----RARRHVGLALGgDSGFYPRASA 99
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIagNHFDFSKTPSdkairELRRNVGMVFQ-QYNLWPHLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFF-ADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:PRK11124 100 QQNLIEApCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
|
170 180
....*....|....*....|
gi 2538311617 179 VRTLIRSLAEDGAAVLLTSH 198
Cdd:PRK11124 180 IVSIIRELAETGITQVIVTH 199
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
27-198 |
8.17e-20 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 85.70 E-value: 8.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVglaLGGDSGFYPRASARDNLLFF 106
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY---LGHRNAMKPALTVAENLEFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 107 ADVAGvsgrSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL 186
Cdd:PRK13539 98 AAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
170
....*....|..
gi 2538311617 187 AEDGAAVLLTSH 198
Cdd:PRK13539 174 LAQGGIVIAATH 185
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-227 |
1.15e-19 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 89.46 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGI--NAIAHPQRARRHVGLalggdsgFYPRASA 99
Cdd:PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNInyNKLDHKLAAQLGIGI-------IYQELSV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNL-----LF--------FADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK09700 92 IDELtvlenLYigrhltkkVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK09700 172 PTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
27-227 |
2.00e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 86.34 E-value: 2.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP-----QRARRHVGLALGgdsgfYPRASARD 101
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkdiKQIRKKVGLVFQ-----FPESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLfFADVA------GVSGRSRRREVDHALARVELTDA--AARPFqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:PRK13649 101 ETV-LKDVAfgpqnfGVSQEEAEALAREKLALVGISESlfEKNPF-ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
27-227 |
2.06e-19 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 85.27 E-value: 2.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRHVGLALGGDSGFyPRASARDNLL 104
Cdd:TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGedITKLPPHERARAGIAYVPQGREIF-PRLTVEENLL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 105 FfadVAGVSGRSRRREVDHALARVE-LTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTV-RTL 182
Cdd:TIGR03410 98 T---GLAALPRRSRKIPDEIYELFPvLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIgRVI 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2538311617 183 IRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:TIGR03410 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-227 |
2.33e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 85.84 E-value: 2.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDaaQLSriFGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQR 78
Cdd:PRK11231 1 MTLRTE--NLT--VGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDkpISMLSSRQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 79 ARRhvgLALGGDSGFYPRASARDNLLFFadvagvsGRS------------RRREVDHALARVELTDAAARPFQEFSRGMK 146
Cdd:PRK11231 75 ARR---LALLPQHHLTPEGITVRELVAY-------GRSpwlslwgrlsaeDNARVNQAMEQTRINHLADRRLTDLSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLED 226
Cdd:PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
.
gi 2538311617 227 I 227
Cdd:PRK11231 225 V 225
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-236 |
4.09e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 88.26 E-value: 4.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 7 AAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLA 86
Cdd:NF033858 269 ARGLTMRFGD----FTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVGYM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 87 LGGDSgFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAA-ARPfQEFSRGMKQRLHIARALLGSPALLLLD 165
Cdd:NF033858 345 SQAFS-LYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVAdALP-DSLPLGIRQRLSLAVAVIHKPELLILD 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 166 EPTNGLDPdIALTV--RTLIRSLAEDGAAVLLTSHLLGEIE--D---LAHtitvlgAGSVAVSGSLEDIAAHAGiAAT 236
Cdd:NF033858 423 EPTSGVDP-VARDMfwRLLIELSREDGVTIFISTHFMNEAErcDrisLMH------AGRVLASDTPAALVAARG-AAT 492
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
16-210 |
4.21e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 83.70 E-value: 4.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 16 TGERAFTAV-DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinAIAHPQRARRHVGLA-LGGDSGF 93
Cdd:cd03231 7 TCERDGRALfSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG--GPLDFQRDSIARGLLyLGHAPGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDNLLFFADVAGVSGrsrrreVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:cd03231 85 KTTLSVLENLRFWHADHSDEQ------VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
170 180 190
....*....|....*....|....*....|....*...
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHL-LGEIEDLAHTI 210
Cdd:cd03231 159 AGVARFAEAMAGHCARGGMVVLTTHQdLGLSEAGAREL 196
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-227 |
7.01e-19 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 83.89 E-value: 7.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGtgerAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQ---RAR 80
Cdd:COG1126 1 MIEIENLHKSFG----DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKdinKLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 RHVGLAlggdsgF-----YPRASARDNLLFfADVAgVSGRSR---RREVDHALARVELTD-AAARPFQeFSRGMKQRLHI 151
Cdd:COG1126 77 RKVGMV------FqqfnlFPHLTVLENVTL-APIK-VKKMSKaeaEERAMELLERVGLADkADAYPAQ-LSGGQQQRVAI 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 152 ARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:COG1126 148 ARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
21-218 |
1.05e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 83.07 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRARRHVGLALgGDSGFYPRASAR 100
Cdd:cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG-RDVTDLPPKDRDIAMVF-QNYALYPHMTVY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 181 TLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03301 171 AELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
9-231 |
1.07e-18 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 83.50 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGErafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG---INAIAHPQR-ARRHVG 84
Cdd:TIGR02315 6 NLSKVYPNGK---QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGtdiTKLRGKKLRkLRRRIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGgDSGFYPRASARDNLL--------FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALL 156
Cdd:TIGR02315 83 MIFQ-HYNLIERLTVLENVLhgrlgykpTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINkEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEV 237
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
23-216 |
1.11e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 83.98 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGInAIAHPQrARRHVGLAlggDSGFYPRASARDN 102
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK-PVEGPG-AERGVVFQ---NEGLLPWRNVQDN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170
|
170 180 190
....*....|....*....|....*....|....*
gi 2538311617 183 IRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK11248 171 LLKLwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
23-227 |
1.17e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 84.36 E-value: 1.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQR----ARRHVGLALGG--DSGFYPR 96
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-EPIKYDKKslleVRKTVGIVFQNpdDQLFAPT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASArdnllffaDVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:PRK13639 96 VEE--------DVAfgplnlGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 171 LDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13639 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
22-232 |
1.25e-18 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 86.35 E-value: 1.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGLALGGDSGFYPRASARD 101
Cdd:COG4988 351 PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVD-LSDLDPASWRRQIAWVPQNPYLFAGTIRE 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFFADVAGvsgrsrRREVDHALARVELTDAAARPFQEF-----------SRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:COG4988 430 NLRLGRPDAS------DEELEAALEAAGLDEFVAALPDGLdtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAH 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 171 LDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:COG4988 504 LDAETEAEILQALRRLAK-GRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLAKNG 563
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
14-235 |
1.69e-18 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 86.04 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHVGLALGGDSG 92
Cdd:COG2274 481 FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDlRQIDPASLRRQIGVVLQDVFL 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 93 FYprASARDNLLFFADVAGVSgrsrrrEVDHALARVELTDAAAR-------PFQE----FSRGMKQRLHIARALLGSPAL 161
Cdd:COG2274 561 FS--GTIRENITLGDPDATDE------EIIEAARLAGLHDFIEAlpmgydtVVGEggsnLSGGQRQRLAIARALLRNPRI 632
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 162 LLLDEPTNGLDPDIALTVRTLIRSLAEdGAAVLLTSHLLgEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:COG2274 633 LILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLARKGLYA 704
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
22-227 |
1.70e-18 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 83.21 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRhvgLA-LGGDSGFYPRAS 98
Cdd:COG4604 15 VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGldVATTPSRELAKR---LAiLRQENHINSRLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDnLLFFadvagvsGR---SR-------RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:COG4604 92 VRE-LVAF-------GRfpySKgrltaedREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 169 NGLDPDIALTVRTLIRSLAED-GAAVLLTSHllgeieDL------AHTITVLGAGSVAVSGSLEDI 227
Cdd:COG4604 164 NNLDMKHSVQMMKLLRRLADElGKTVVIVLH------DInfascyADHIVAMKDGRVVAQGTPEEI 223
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
27-230 |
2.85e-18 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 82.49 E-value: 2.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-----AIAHPQRA----RRHVGLALGGDSGFyPRA 97
Cdd:PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITidtarSLSQQKGLirqlRQHVGFVFQNFNLF-PHR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVagVSGRSRRREVDHA---LARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPD 174
Cdd:PRK11264 101 TVLENIIEGPVI--VKGEPKEEATARArelLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 175 IALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:PRK11264 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
15-222 |
3.72e-18 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 81.06 E-value: 3.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 15 GTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTT--TVQMCSTLLTPTSGTLTVNGINAiaHPQRARRHVGLALGGDSg 92
Cdd:cd03213 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTllNALAGRRTGLGVSGEVLINGRPL--DKRSFRKIIGYVPQDDI- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 93 FYPRASARDNLLFFADVAGVSGRSRRRevdhalarveltdaaarpfqefsrgmkqrLHIARALLGSPALLLLDEPTNGLD 172
Cdd:cd03213 93 LHPTLTVRETLMFAAKLRGLSGGERKR-----------------------------VSIALELVSNPSLLFLDEPTSGLD 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 173 PDIALTVRTLIRSLAEDGAAVLLTSH-LLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03213 144 SSSALQVMSLLRRLADTGRTIICSIHqPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
23-227 |
3.72e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 83.17 E-value: 3.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAI---AHPQRARRHVGLALGgdsgfYPrasa 99
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkkVKLSDIRKKVGLVFQ-----YP---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 rDNLLF----FADVA------GVSGRSRRREVDHALARVEL---TDAAARPFqEFSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK13637 93 -EYQLFeetiEKDIAfgpinlGLSEEEIENRVKRAMNIVGLdyeDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13637 171 PTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1-227 |
5.46e-18 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 83.93 E-value: 5.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTG-ERAFTAVDR-------------------VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTP 60
Cdd:PRK10070 1 MAIKLEIKNLYKIFGEHpQRAFKYIEQglskeqilektglslgvkdASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 61 TSGTLTVNGIN----AIAHPQRARRHVGLALGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAAR 136
Cdd:PRK10070 81 TRGQVLIDGVDiakiSDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 137 PFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR-TLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGA 215
Cdd:PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQdELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240
|
250
....*....|..
gi 2538311617 216 GSVAVSGSLEDI 227
Cdd:PRK10070 241 GEVVQVGTPDEI 252
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
23-241 |
6.17e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 82.09 E-value: 6.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQR-ARRHVGLALGG--DSGFypRASA 99
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKVGLVFQDpdDQVF--SSTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTV 179
Cdd:PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 180 RTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG-----SLEDIAAHAGIAATTVVQV 241
Cdd:PRK13647 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGdksllTDEDIVEQAGLRLPLVAQI 244
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
26-222 |
1.35e-17 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 79.84 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 26 RVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQrARRHVGLaLGGDSGFYPRASARDNLLF 105
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-ADRPVSM-LFQENNLFAHLTVEQNVGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 fadvaGVSGRSRRREVDH-----ALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:cd03298 94 -----GLSPGLKLTAEDRqaievALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 181 TLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03298 169 DLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
23-227 |
1.59e-17 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 80.80 E-value: 1.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARR-------HVGLalggdsgf 93
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGqhIEGLPGHQIARMgvvrtfqHVRL-------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDNLL----------FFADVAGVSG--RSRRREVDHA---LARVELTDAAARPFQEFSRGMKQRLHIARALLGS 158
Cdd:PRK11300 92 FREMTVIENLLvaqhqqlktgLFSGLLKTPAfrRAESEALDRAatwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 159 PALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK11300 172 PEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
14-232 |
2.77e-17 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 82.51 E-value: 2.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLaLGGDSG 92
Cdd:COG4987 341 FRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDlRRRIAV-VPQRPH 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 93 FYpRASARDNLLFFADVAGvsgrsrRREVDHALARVELTDAAARPFQ-----------EFSRGMKQRLHIARALLGSPAL 161
Cdd:COG4987 420 LF-DTTLRENLRLARPDAT------DEELWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERRRLALARALLRDAPI 492
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 162 LLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGeiEDLAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:COG4987 493 LLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAG--LERMDRILVLEDGRIVEQGTHEELLAQNG 561
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
24-227 |
2.92e-17 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 79.43 E-value: 2.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRARrhvgLALGGDSGFYPRASARDNL 103
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-KQITEPGPDR----MVVFQNYSLLPWLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFAD--VAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDpdiALTVRT 181
Cdd:TIGR01184 76 ALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD---ALTRGN 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2538311617 182 LIRSL----AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:TIGR01184 153 LQEELmqiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-231 |
5.44e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 79.67 E-value: 5.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHVGLALGGDSGFYPRASARD 101
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVlSEETVWDVRRQVGMVFQNPDNQFVGATVQD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP----DIAL 177
Cdd:PRK13635 102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPrgrrEVLE 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 178 TVRTLIRslaEDGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:PRK13635 182 TVRQLKE---QKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSG 231
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-230 |
6.04e-17 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 80.01 E-value: 6.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQL------SRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA 74
Cdd:PRK11308 2 QQPLLQAIDLkkhypvKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 75 HPQRA----RRHVGLALGGDSG-FYPRASARDNL----LFFADVagvSGRSRRREVDHALARVEL-TDAAARPFQEFSRG 144
Cdd:PRK11308 82 ADPEAqkllRQKIQIVFQNPYGsLNPRKKVGQILeeplLINTSL---SAAERREKALAMMAKVGLrPEHYDRYPHMFSGG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 145 MKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
....*..
gi 2538311617 224 LEDIAAH 230
Cdd:PRK11308 239 KEQIFNN 245
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
27-222 |
6.56e-17 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 78.47 E-value: 6.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTP---TSGTLTVNGINAiaHPQRARRHVGLALGGDSgFYPRASARDNL 103
Cdd:cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPR--KPDQFQKCVAYVRQDDI-LLPGLTVRETL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFADVAG----VSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTV 179
Cdd:cd03234 103 TYTAILRLprksSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2538311617 180 RTLIRSLAEDGAAVLLTSHLLG-EIEDLAHTITVLGAGSVAVSG 222
Cdd:cd03234 183 VSTLSQLARRNRIVILTIHQPRsDLFRLFDRILLLSSGEIVYSG 226
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-227 |
1.08e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 79.01 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 20 AFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQR-----ARRHVGLALG-GDSGF 93
Cdd:PRK13643 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQkeikpVRKKVGVVFQfPESQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDnLLFFADVAGVSGRSRRREVDHALARVELTDA--AARPFqEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:PRK13643 98 FEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEfwEKSPF-ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 172 DPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13643 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-230 |
1.27e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 80.50 E-value: 1.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQmcSTL-LTP-----TSGTLTVNGINAIAHPQ 77
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTAL--SILrLLPdpaahPSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 78 RARRHVglaLGGDSGFY---PRASArdNLLF-----FADV----AGVSGRSRRREVDHALARVELTDAAAR----PFQeF 141
Cdd:COG4172 84 RELRRI---RGNRIAMIfqePMTSL--NPLHtigkqIAEVlrlhRGLSGAAARARALELLERVGIPDPERRldayPHQ-L 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 142 SRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAV 220
Cdd:COG4172 158 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHDLGVVRRFADRVAVMRQGEIVE 237
|
250
....*....|
gi 2538311617 221 SGSLEDIAAH 230
Cdd:COG4172 238 QGPTAELFAA 247
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
27-229 |
1.46e-16 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 79.39 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-----RRHVGLALGgDSGFYPRASARD 101
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIflppeKRRIGYVFQ-EARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFfaDVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRT 181
Cdd:TIGR02142 95 NLRY--GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 182 LIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:TIGR02142 173 YLERLhAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
23-227 |
1.56e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 78.11 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINA--IAHPQRARRHVGLALGGDSGFYPRASAR 100
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVGIVFQNPETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2538311617 181 TLIRSLAEDGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13644 177 ERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
14-216 |
1.77e-16 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 75.88 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRA--RRHVGLaLGGDS 91
Cdd:cd03228 8 FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-LRDLDLEslRKNIAY-VPQDP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 92 GFYPrASARDNLLffadvagvSGrsrrrevdhalarveltdaaarpfqefsrGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:cd03228 86 FLFS-GTIRENIL--------SG-----------------------------GQRQRIAIARALLRDPPILILDEATSAL 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2538311617 172 DPDIALTVRTLIRSLAeDGAAVLLTSHLLGEIEDlAHTITVLGAG 216
Cdd:cd03228 128 DPETEALILEALRALA-KGKTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
26-235 |
1.93e-16 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 77.10 E-value: 1.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 26 RVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGLaLGGDSGFYPRASARDNLLF 105
Cdd:COG3840 17 RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQD-LTALPPAERPVSM-LFQENNLFPHLTVAQNIGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 fadvaGVSGRSR-----RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:COG3840 95 -----GLRPGLKltaeqRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEML 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 181 TLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:COG3840 170 DLVDELCrERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPA 225
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
22-250 |
1.96e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 77.82 E-value: 1.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINA--IAHPQRARRHVGLALGGDsgfyprasa 99
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTsdEENLWDIRNKAGMVFQNP--------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 rDNLLFFA----DVA------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:PRK13633 95 -DNQIVATiveeDVAfgpenlGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 170 GLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAhagiaattvvQVEATATEG 248
Cdd:PRK13633 174 MLDPSGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK----------EVEMMKKIG 242
|
..
gi 2538311617 249 LD 250
Cdd:PRK13633 243 LD 244
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
23-212 |
3.85e-16 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 78.87 E-value: 3.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGInAIAHPQRARRHVGLALGGDSGFYPRASARDN 102
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV-PLADADADSWRDQIAWVPQHPFLFAGTIAEN 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSgrsrrrEVDHALARVELTD-AAARPF----------QEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:TIGR02857 416 IRLARPDASDA------EIREALERAGLDEfVAALPQgldtpigeggAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 172 DPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDLAHTITV 212
Cdd:TIGR02857 490 DAETEAEVLEALRALAQ-GRTVLLVTHRLALAALADRIVVL 529
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-227 |
4.79e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.57 E-value: 4.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSR-------IFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQmcsTL--LTPTSGTLTVNGINAIA 74
Cdd:COG4172 275 LLEARDLKVwfpikrgLFRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGL---ALlrLIPSEGEIRFDGQDLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 75 HPQRARRhvglALGGD---------SGFYPRASARD----NLLFFADvaGVSGRSRRREVDHALARVELT-DAAARPFQE 140
Cdd:COG4172 352 LSRRALR----PLRRRmqvvfqdpfGSLSPRMTVGQiiaeGLRVHGP--GLSAAERRARVAEALEEVGLDpAARHRYPHE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 141 FSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:COG4172 426 FSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLqREHGLAYLFISHDLAVVRALAHRVMVMKDGKVV 505
|
....*...
gi 2538311617 220 VSGSLEDI 227
Cdd:COG4172 506 EQGPTEQV 513
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-198 |
8.93e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 77.84 E-value: 8.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-----INAIAH 75
Cdd:PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGqdvatLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 76 PQRARRHVGLALGgDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARAL 155
Cdd:PRK10535 81 AQLRREHFGFIFQ-RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 156 LGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-198 |
1.44e-15 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 74.78 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRAR- 80
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGqdLFALDEDARARl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 --RHVGlalggdsgF-------YPRASARDNLLFFADVAGVSG-RSRRREvdhALARVELTD-AAARPFQeFSRGMKQRL 149
Cdd:COG4181 88 raRHVG--------FvfqsfqlLPTLTALENVMLPLELAGRRDaRARARA---LLERVGLGHrLDHYPAQ-LSGGEQQRV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2538311617 150 HIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSH 198
Cdd:COG4181 156 ALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTH 205
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
23-230 |
2.76e-15 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 75.64 E-value: 2.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGLALgGDSGFYPRASARDN 102
Cdd:PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD-LSHVPPYQRPINMMF-QSYALFPHMTVEQN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 183 IRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:PRK11607 192 VVDILERvGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
27-243 |
2.82e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 74.66 E-value: 2.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRA----RRHVGLALggdsgfypraSARDN 102
Cdd:PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGllalRQQVATVF----------QDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADV----------AGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:PRK13638 89 QIFYTDIdsdiafslrnLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 173 PDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA------HAGIAATTVVQVEA 243
Cdd:PRK13638 169 PAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFActeameQAGLTQPWLVKLHT 245
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
24-225 |
2.99e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.94 E-value: 2.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTtvqMCSTLL-----TPTSGTLTVNGINAIAHP--QRARRHVGLAlggdsgF-YP 95
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKST---LAKTIMghpkyEVTEGEILFKGEDITDLPpeERARLGIFLA------FqYP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 rasardnllffADVAGVSGRSRRREVDHAlarveltdaaarpfqeFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDI 175
Cdd:cd03217 87 -----------PEIPGVKNADFLRYVNEG----------------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 176 ALTVRTLIRSLAEDGAAVLLTSH---LLGEIE-DLAHtitVLGAGSVAVSGSLE 225
Cdd:cd03217 140 LRLVAEVINKLREEGKSVLIITHyqrLLDYIKpDRVH---VLYDGRIVKSGDKE 190
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
27-225 |
3.13e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 73.95 E-value: 3.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTtvqMCSTLL-----TPTSGTLTVNG--INAIAHPQRARRHVGLAlggdsgF-YPras 98
Cdd:COG0396 19 VNLTIKPGEVHAIMGPNGSGKST---LAKVLMghpkyEVTSGSILLDGedILELSPDERARAGIFLA------FqYP--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ardnllffADVAGVSGR--------SRRRE----------VDHALARVEL-TDAAARPFQE-FSRGMKQRLHIARALLGS 158
Cdd:COG0396 87 --------VEIPGVSVSnflrtalnARRGEelsareflklLKEKMKELGLdEDFLDRYVNEgFSGGEKKRNEILQMLLLE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 159 PALLLLDEPTNGLDPDiAL-TVRTLIRSLAEDGAAVLLTSH---LLGEIEdlAHTITVLGAGSVAVSGSLE 225
Cdd:COG0396 159 PKLAILDETDSGLDID-ALrIVAEGVNKLRSPDRGILIITHyqrILDYIK--PDFVHVLVDGRIVKSGGKE 226
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-227 |
3.50e-15 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 74.94 E-value: 3.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLvLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQ-MCStlLTPTSGTLTV-----NGINAIA 74
Cdd:COG4170 1 MPL-LDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKaICG--ITKDNWHVTAdrfrwNGIDLLK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 75 HPQRARRHVglaLGGD---------SGFYPRASARDNLLFFADVAGVSGR------SRRREVDHALARVELTD----AAA 135
Cdd:COG4170 78 LSPRERRKI---IGREiamifqepsSCLDPSAKIGDQLIEAIPSWTFKGKwwqrfkWRKKRAIELLHRVGIKDhkdiMNS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 136 RPFqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAE-DGAAVLLTSHLLGEIEDLAHTITVLG 214
Cdd:COG4170 155 YPH-ELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLISHDLESISQWADTITVLY 233
|
250
....*....|...
gi 2538311617 215 AGSVAVSGSLEDI 227
Cdd:COG4170 234 CGQTVESGPTEQI 246
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
23-213 |
5.23e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 75.33 E-value: 5.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALggdsgFY------PR 96
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI-----IYqelhlvPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLF--FADVAGVSGRSR-RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD- 172
Cdd:PRK11288 94 MTVAENLYLgqLPHKGGIVNRRLlNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSa 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 173 PDIALTVRtLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:PRK11288 174 REIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVF 213
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
13-230 |
5.52e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 74.38 E-value: 5.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 13 IFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----RRHVGL--- 85
Cdd:COG4608 23 LFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRElrplRRRMQMvfq 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 ----ALGgdsgfyPRASARDNLLFFADVAGV-SGRSRRREVDHALARVELTDAAARPF-QEFSRGMKQRLHIARALLGSP 159
Cdd:COG4608 103 dpyaSLN------PRMTVGDIIAEPLRIHGLaSKAERRERVAELLELVGLRPEHADRYpHEFSGGQRQRIGIARALALNP 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 160 ALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG4608 177 KLIVCDEPVSALDVSIQAQVLNLLEDLqDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELYAR 248
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
23-229 |
6.01e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 73.73 E-value: 6.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRA----RRHVGLALGGDSGFYPRAS 98
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG-KPIDYSRKGlmklRESVGMVFQDPDNQLFSAS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 179 VRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:PRK13636 180 IMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-259 |
8.38e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 73.23 E-value: 8.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTGERAFTaVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-INAIAHPQRA 79
Cdd:PRK13650 1 MSNIIEVKNLTFKYKEDQEKYT-LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdLLTEENVWDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGLALGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSP 159
Cdd:PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 160 ALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEdLAHTITVLGAGSVAVSGSLEDIAAHAG------ 232
Cdd:PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSRGNdllqlg 238
|
250 260
....*....|....*....|....*....
gi 2538311617 233 --IAATTVVqVEATATEGLDTLRGFLGER 259
Cdd:PRK13650 239 ldIPFTTSL-VQSLRQNGYDLPEGYLTEK 266
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-172 |
9.52e-15 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 74.21 E-value: 9.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGerafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHV 83
Cdd:PRK09452 14 LVELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD-ITHVPAENRHV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 -----GLALggdsgfYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGS 158
Cdd:PRK09452 89 ntvfqSYAL------FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162
|
170
....*....|....
gi 2538311617 159 PALLLLDEPTNGLD 172
Cdd:PRK09452 163 PKVLLLDESLSALD 176
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
9-216 |
1.25e-14 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 71.83 E-value: 1.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIFGTGERAFTAVDrvsLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA----RRHVG 84
Cdd:PRK10908 6 HVSKAYLGGRQALQGVT---FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREvpflRRQIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LALGgDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:PRK10908 83 MIFQ-DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
5-222 |
1.96e-14 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 71.88 E-value: 1.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGerafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-----INAIAHPQRA 79
Cdd:PRK11701 7 LSVRGLTKLYGPR----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVglaLGGDSGF---YPRASARDNLLFFADVA----GVSGRSR---RREVDHALARVELtdAAAR----PfQEFSRGM 145
Cdd:PRK11701 83 RRRL---LRTEWGFvhqHPRDGLRMQVSAGGNIGerlmAVGARHYgdiRATAGDWLERVEI--DAARiddlP-TTFSGGM 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 146 KQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
6-225 |
2.48e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 71.84 E-value: 2.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 6 DAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGI--------NAIAH-- 75
Cdd:PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQptrqalqkNLVAYvp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 76 ---------PQRARRHVGLALGGDSGFYPRASARDnllffadvagvsgrsrRREVDHALARVELTDAAARPFQEFSRGMK 146
Cdd:PRK15056 85 qseevdwsfPVLVEDVVMMGRYGHMGWLRRAKKRD----------------RQIVTAALARVDMVEFRHRQIGELSGGQK 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAhTITVLGAGSVAVSGSLE 225
Cdd:PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKGTVLASGPTE 226
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
23-227 |
2.65e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 71.75 E-value: 2.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTS---GTLTVNGINAIAHPQ-RARRHVGLALGGDSGFYPRAS 98
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVwDIREKVGIVFQNPDNQFVGAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALT 178
Cdd:PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2538311617 179 VRTLIRSLAED-GAAVLLTSHLLGEIEdLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13640 182 ILKLIRKLKKKnNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI 230
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-227 |
3.59e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 72.08 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLvLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLT-P---TSGTLTVNGINAIAHP 76
Cdd:PRK11022 1 MAL-LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPgrvMAEKLEFNGQDLQRIS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 77 QRARRHVglaLGGD---------SGFYPRASARDNLLFFADV-AGVSGRSRRREVDHALARVELTDAAAR----PFQeFS 142
Cdd:PRK11022 80 EKERRNL---VGAEvamifqdpmTSLNPCYTVGFQIMEAIKVhQGGNKKTRRQRAIDLLNQVGIPDPASRldvyPHQ-LS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 143 RGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLA--EDGAAVLLTsHLLGEIEDLAHTITVLGAGSVAV 220
Cdd:PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQqkENMALVLIT-HDLALVAEAAHKIIVMYAGQVVE 234
|
....*..
gi 2538311617 221 SGSLEDI 227
Cdd:PRK11022 235 TGKAHDI 241
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-218 |
3.66e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 71.73 E-value: 3.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA-----HPQRARRHVGLALG-GDSGFY 94
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHktkdkYIRPVRKRIGMVFQfPESQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PRASARDNLL----FFADVAGVSGRSRRREVDHALARVELTDAaarPFQeFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:PRK13646 100 EDTVEREIIFgpknFKMNLDEVKNYAHRLLMDLGFSRDVMSQS---PFQ-MSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 171 LDPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
22-186 |
4.13e-14 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 72.06 E-value: 4.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGL-----ALggdsgfYPR 96
Cdd:PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED-VTHRSIQQRDICMvfqsyAL------FPH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIA 176
Cdd:PRK11432 93 MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172
|
170
....*....|
gi 2538311617 177 LTVRTLIRSL 186
Cdd:PRK11432 173 RSMREKIREL 182
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-227 |
6.97e-14 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 71.27 E-value: 6.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDaaQLSRIFGTgerafTAV-DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRA 79
Cdd:PRK10851 1 MSIEIA--NIKKSFGR-----TQVlNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTD-VSRLHAR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGLAlggdsgFYPRASAR-----DNLLFFADVagVSGRSR------RREVDHALARVELTDAAARPFQEFSRGMKQR 148
Cdd:PRK10851 73 DRKVGFV------FQHYALFRhmtvfDNIAFGLTV--LPRRERpnaaaiKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 149 LHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED--GAAVLLTsHLLGEIEDLAHTITVLGAGSVAVSGSLED 226
Cdd:PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEElkFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223
|
.
gi 2538311617 227 I 227
Cdd:PRK10851 224 V 224
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
26-223 |
7.32e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 72.00 E-value: 7.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 26 RVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTP---TSGTLTVNGINAIAHPQRARRHVglaLGGDSGFYPRASARDN 102
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPIDAKEMRAISAY---VQQDDLFIPTLTVREH 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADV---AGVSGRSRRREVDHALARVELTDAA------ARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:TIGR00955 120 LMFQAHLrmpRRVTKKEKRERVDEVLQALGLRKCAntrigvPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHL-LGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:TIGR00955 200 FMAYSVVQVLKGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGS 250
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
23-227 |
9.40e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 70.02 E-value: 9.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQR-ARRHVGLALGG-DSGFYPrASAR 100
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKeIRKKIGIIFQNpDNQFIG-ATVE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2538311617 181 TLIRSLAEDGAAVLLT-SHLLGEIEdLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13632 183 KIMVDLRKTRKKTLISiTHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
30-198 |
9.52e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 69.11 E-value: 9.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 30 RISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiAHPQRARRHVGLA-LGGDSGFYPRASARDNLLFfad 108
Cdd:PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMAyLGHLPGLKADLSTLENLHF--- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 109 VAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAE 188
Cdd:PRK13543 106 LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR 185
|
170
....*....|
gi 2538311617 189 DGAAVLLTSH 198
Cdd:PRK13543 186 GGGAALVTTH 195
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
25-198 |
9.83e-14 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 69.06 E-value: 9.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 25 DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHpQRARRHVGLA-LGGDSGFYPRASARDNL 103
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEP-IRR-QRDEYHQDLLyLGHQPGIKTELTALENL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFADVAGVSGRSRRRevdHALARVELT---DAAARpfqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:PRK13538 96 RFYQRLHGPGDDEALW---EALAQVGLAgfeDVPVR---QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169
|
170
....*....|....*...
gi 2538311617 181 TLIRSLAEDGAAVLLTSH 198
Cdd:PRK13538 170 ALLAQHAEQGGMVILTTH 187
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
21-223 |
1.02e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 70.42 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN------GINAIAHPQRARRHVGLALGGDSGFY 94
Cdd:PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGdyaipaNLKKIKEVKRLRKEIGLVFQFPEYQL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAAR--PFqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKrsPF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 173 PDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGS 223
Cdd:PRK13645 183 PKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
14-211 |
1.18e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.97 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAhPQRARRHVGL-----A 86
Cdd:PRK10247 15 YLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGedISTLK-PEIYRQQVSYcaqtpT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 87 LGGDsgfypraSARDNLLFFADVagvsgRSRRREVDH---ALARVELTDAA-ARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:PRK10247 92 LFGD-------TVYDNLIFPWQI-----RNQQPDPAIfldDLERFALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTIT 211
Cdd:PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREqNIAVLWVTHDKDEINHADKVIT 209
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
38-227 |
1.39e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 69.83 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 38 ALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAI-AHPQRARRHVGLALGG--DSGFYPraSARDNLLFFADVAGVSG 114
Cdd:PRK13652 34 AVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITkENIREVRKFVGLVFQNpdDQIFSP--TVEQDIAFGPINLGLDE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 115 RSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAV 193
Cdd:PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTV 191
|
170 180 190
....*....|....*....|....*....|....
gi 2538311617 194 LLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK13652 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
27-230 |
1.69e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 68.99 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTltvnginaIAHPQRARrhvglalggdSGFYPRASARDNLL-- 104
Cdd:PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV--------IKRNGKLR----------IGYVPQKLYLDTTLpl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 105 ----FFADVAGVsgrsRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:PRK09544 85 tvnrFLRLRPGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 181 TLIRSL-AEDGAAVLLTSHLLGEIedLAHTITVLGA-GSVAVSGSLEDIAAH 230
Cdd:PRK09544 161 DLIDQLrRELDCAVLMVSHDLHLV--MAKTDEVLCLnHHICCSGTPEVVSLH 210
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-223 |
1.78e-13 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 69.27 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTgERAFTAVDrvsLRISSGEIHALLGPNGAGKTTTVQMCSTLLT--PTSGTL------TVNGINA 72
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQ-HQALHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdKSAGSHiellgrTVQREGR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 73 IAHPQR-ARRHVGLALGgDSGFYPRASARDNLL--------FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSR 143
Cdd:PRK09984 77 LARDIRkSRANTGYIFQ-QFNLVNRLSVLENVLigalgstpFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 144 GMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAE-DGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
.
gi 2538311617 223 S 223
Cdd:PRK09984 236 S 236
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
24-227 |
2.08e-13 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 68.52 E-value: 2.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRaRRHVGLaLGGDSGFYPRASARDNL 103
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-KRDISY-VPQNYALFPHMTVYKNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFADVAGVSGRSRRREV---------DHALARVELTdaaarpfqeFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPD 174
Cdd:cd03299 93 AYGLKKRKVDKKEIERKVleiaemlgiDHLLNRKPET---------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 175 IALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:cd03299 164 TKEKLREELKKIrKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-199 |
2.47e-13 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 69.04 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 2 SLVLDAAQLSRIFGTgeraFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTL--LTPT---SGTLTVNGINAIA-- 74
Cdd:PRK14243 8 ETVLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGfrvEGKVTFHGKNLYApd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 75 -HPQRARRHVGLALGGDSGFyPRaSARDNLLFFADVAGVSG-------RSRRRevdhALARVELTDAAARPFQEFSRGMK 146
Cdd:PRK14243 84 vDPVEVRRRIGMVFQKPNPF-PK-SIYDNIAYGARINGYKGdmdelveRSLRQ----AALWDEVKDKLKQSGLSLSGGQQ 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHL 199
Cdd:PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
27-230 |
2.94e-13 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 69.74 E-value: 2.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG---------INAIAHpqraRRHVGLALGGDSGFyPRA 97
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlqdsargIFLPPH----RRRIGYVFQEARLF-PHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVAGvsGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:COG4148 93 SVRGNLLYGRKRAP--RAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 178 TVRTLIRSLAEDGA-AVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:COG4148 171 EILPYLERLRDELDiPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSR 224
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
14-222 |
3.23e-13 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 66.95 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVgLALGGDSGF 93
Cdd:cd03247 8 FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP-VSDLEKALSSL-ISVLNQRPY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDNLlffadvagvsGRsrrrevdhalarveltdaaarpfqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:cd03247 86 LFDTTLRNNL----------GR------------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHLLGeIEDlAHTITVLGAGSVAVSG 222
Cdd:cd03247 132 ITERQLLSLIFEVLKDKTLIWITHHLTG-IEH-MDKILFLENGKIIMQG 178
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
23-235 |
4.03e-13 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 69.75 E-value: 4.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGInAIAHPQRA--RRHVGLAlggdsgfyprasAR 100
Cdd:TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH-DLADYTLAslRRQVALV------------SQ 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQE----------------FSRGMKQRLHIARALLGSPALLLL 164
Cdd:TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDklplgldtpigengvlLSGGQRQRLAIARALLKDAPILIL 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:TIGR02203 494 DEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERGTHNELLARNGLYA 562
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
17-231 |
4.79e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 68.24 E-value: 4.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 17 GERAFTaVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP-QRARRHVGLALGGDSGFYP 95
Cdd:PRK13648 19 SDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNfEKLRKHIGIVFQNPDNQFV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 RASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDI 175
Cdd:PRK13648 98 GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 176 ALTVRTLIRSLAEDGAAVLLT-SHLLGEIEDLAHTItVLGAGSVAVSGSLEDIAAHA 231
Cdd:PRK13648 178 RQNLLDLVRKVKSEHNITIISiTHDLSEAMEADHVI-VMNKGTVYKEGTPTEIFDHA 233
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
24-236 |
9.15e-13 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 67.03 E-value: 9.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTvqmCSTLL-------TPTSGTLTVNGINAiaHPQRAR-RHVGLALGGD-SGFY 94
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLT---CAAALgilpagvRQTAGRVLLDGKPV--APCALRgRKIATIMQNPrSAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 P----RASARDNLLffadvaGVSGRSRRREVDHALARVELTDAA----ARPFqEFSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK10418 94 PlhtmHTHARETCL------ALGKPADDATLTAALEAVGLENAArvlkLYPF-EMSGGMLQRMMIALALLCEAPFIIADE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAAT 236
Cdd:PRK10418 167 PTTDLDVVAQARILDLLESIVQKrALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVT 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
24-216 |
9.17e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 67.55 E-value: 9.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHP-----QRARRHVGLALGgdsgfYPRAS 98
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETgnknlKKLRKKVSLVFQ-----FPEAQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFfADVA------GVSGRSRRREVDHALARVELTD--AAARPFqEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:PRK13641 98 LFENTVL-KDVEfgpknfGFSEDEAKEKALKWLKKVGLSEdlISKSPF-ELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2538311617 171 LDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
27-222 |
1.40e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 67.75 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAhPqrARRHVGL-----ALggdsgfYPRASA 99
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEkrMNDVP-P--AERGVGMvfqsyAL------YPHLSV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTV 179
Cdd:PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2538311617 180 RTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:PRK11000 173 RIEISRLHKRlGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
27-227 |
1.47e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 66.61 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-----------INAIahpqRARRHVGLALGGDSGFyP 95
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGkvlyfgkdifqIDAI----KLRKEVGMVFQQPNPF-P 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 RASARDNLLFFADVAGVS-GRSRRREVDHALARV----ELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIKeKREIKKIVEECLRKVglwkEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 171 LDPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK14246 184 IDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
23-222 |
1.48e-12 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 65.69 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINA-IAHPQRARRHVGLaLGGDSG-FYprASAR 100
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIrQLDPADLRRNIGY-VPQDVTlFY--GTLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFADVAgvsgrsRRREVDHALARVELTDAAAR-------PFQE----FSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:cd03245 96 DNITLGAPLA------DDERILRAAELAGVTDFVNKhpngldlQIGErgrgLSGGQRQAVALARALLNDPPILLLDEPTS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDGAAVLLT--SHLLgeieDLAHTITVLGAGSVAVSG 222
Cdd:cd03245 170 AMDMNSEERLKERLRQLLGDKTLIIIThrPSLL----DLVDRIIVMDSGRIVADG 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-213 |
1.72e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 67.74 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRifgTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHV 83
Cdd:COG3845 257 VLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRL 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 84 GLA------LGgdSGFYPRASARDNLLF-FADVAGVSGR---SRRREVDHALARVE----LTDAAARPFQEFSRGMKQRL 149
Cdd:COG3845 334 GVAyipedrLG--RGLVPDMSVAENLILgRYRRPPFSRGgflDRKAIRAFAEELIEefdvRTPGPDTPARSLSGGNQQKV 411
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 150 HIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:COG3845 412 ILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVM 475
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-194 |
1.72e-12 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 65.92 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIF---GTGERAFTAVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLL-------TPTSGTLTVNGI 70
Cdd:COG4778 1 MTTLLEVENLSKTFtlhLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGK-------STLLkciygnyLPDSGSILVRHD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 71 N-----AIAHPQ---RARRHVglaLGGDSGFY---PRASARDnllffadVagVSGRSRRREVDHALARVELTDAAAR--- 136
Cdd:COG4778 74 GgwvdlAQASPReilALRRRT---IGYVSQFLrviPRVSALD-------V--VAEPLLERGVDREEARARARELLARlnl 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 137 -------PFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVL 194
Cdd:COG4778 142 perlwdlPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAII 206
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
23-200 |
3.54e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 67.00 E-value: 3.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGGDSGFYPrASARDN 102
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD-TTVREN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFA-DVAGvsgrsrrREVDHALARVELTD-AAARPF----------QEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:TIGR02868 429 LRLARpDATD-------EELWAALERVGLADwLRALPDgldtvlgeggARLSGGERQRLALARALLADAPILLLDEPTEH 501
|
170 180 190
....*....|....*....|....*....|
gi 2538311617 171 LDPDIALTVRTLIRSlAEDGAAVLLTSHLL 200
Cdd:TIGR02868 502 LDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-227 |
4.12e-12 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 64.95 E-value: 4.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLtPTSGTLTVNGIN--AIAHPQRARRhvglalggdsgfypRA--SARDN 102
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPleAWSAAELARH--------------RAylSQQQT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFADV---------AGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQR-------LHIARALLGSPALLLLDE 166
Cdd:PRK03695 80 PPFAMPVfqyltlhqpDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINPAGQLLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK03695 160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
27-227 |
6.04e-12 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 64.61 E-value: 6.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-------------AIAHPQRARRHVGLALGGDSGF 93
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTinlvrdkdgqlkvADKNQLRLLRTRLTMVFQHFNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDNLLFF-ADVAGVSGRSRRREVDHALARVELTDAAARPFQ-EFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:PRK10619 104 WSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 172 DPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
18-218 |
6.47e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.11 E-value: 6.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 18 ERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA-HPQRARRHVGLALGGDSGFYPR 96
Cdd:PRK13642 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAeNVWNLRRKIGMVFQNPDNQFVG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIA 176
Cdd:PRK13642 97 ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 177 LTVRTLIRSLAED-GAAVLLTSHLLGEIEDlAHTITVLGAGSV 218
Cdd:PRK13642 177 QEIMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEI 218
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
27-231 |
7.44e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 65.04 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVnGINAIAHPQRA------RRHVGLALGgdsgfYPRASar 100
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNkklkplRKKVGIVFQ-----FPEHQ-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 dnlLFFADVA----------GVSGRSRRREVDHALARVELTDA--AARPFqEFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:PRK13634 98 ---LFEETVEkdicfgpmnfGVSEEDAKQKAREMIELVGLPEEllARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 169 NGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHA 231
Cdd:PRK13634 174 AGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
27-218 |
8.22e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 64.03 E-value: 8.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLALGGDSGFYPRaSARDNLLF- 105
Cdd:cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYg 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 -----FADVAGVSGRSRRREVDHALARVELTDAAARPFQeFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:cd03248 112 lqscsFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ-LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
|
170 180 190
....*....|....*....|....*....|....*...
gi 2538311617 181 TLIRSLAEDgAAVLLTSHLLGEIEDlAHTITVLGAGSV 218
Cdd:cd03248 191 QALYDWPER-RTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
23-235 |
1.00e-11 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 63.66 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHVGLALGGDSGFypRASARD 101
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDlALADPAWLRRQVGVVLQENVLF--NRSIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLlffadVAGVSGRSRRREVdhALARVELTDAAARPFQE------------FSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:cd03252 95 NI-----ALADPGMSMERVI--EAAKLAGAHDFISELPEgydtivgeqgagLSGGQRQRIAIARALIHNPRILIFDEATS 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 170 GLDPDialTVRTLIRSLAE--DGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:cd03252 168 ALDYE---SEHAIMRNMHDicAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENGLYA 231
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
23-229 |
1.02e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 65.59 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN-GINAIAHPQ-------RARRHVGLaLGGDSGFY 94
Cdd:TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKpgpdgrgRAKRYIGI-LHQEYDLY 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PRASARDNL-----LFFADVAGvsgrsRRREVdHALARVELTDAAARPF-----QEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:TIGR03269 378 PHRTVLDNLteaigLELPDELA-----RMKAV-ITLKMVGFDEEKAEEIldkypDELSEGERHRVALAQVLIKEPRIVIL 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 165 DEPTNGLDPDIALTV-RTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:TIGR03269 452 DEPTGTMDPITKVDVtHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
27-227 |
1.30e-11 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 63.71 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKtttvqmcSTLL------TPTSGTLTVNG--INAIAHPQRARRhvglalggdsgfypRA- 97
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGK-------STLLarmaglLPGQGEILLNGrpLSDWSAAELARH--------------RAy 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 -SARDNLLFFADV---------AGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARA-------LLGSPA 160
Cdd:COG4138 74 lSQQQSPPFAMPVfqylalhqpAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVllqvwptINPEGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 161 LLLLDEPTNGLdpDIA--LTVRTLIRSLAEDGAAVLLTSHllgeieDLAHT------ITVLGAGSVAVSGSLEDI 227
Cdd:COG4138 154 LLLLDEPMNSL--DVAqqAALDRLLRELCQQGITVVMSSH------DLNHTlrhadrVWLLKQGKLVASGETAEV 220
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
1-230 |
1.69e-11 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 63.32 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGT-----GERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAH 75
Cdd:COG4167 1 MSALLEVRNLSKTFKYrtglfRRQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILING-HKLEY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 76 ---PQRARrHVGLAL-GGDSGFYPRASARDNL---LFFAdvAGVSGRSRRREVDHALARVEL-TDAAARPFQEFSRGMKQ 147
Cdd:COG4167 80 gdyKYRCK-HIRMIFqDPNTSLNPRLNIGQILeepLRLN--TDLTAEEREERIFATLRLVGLlPEHANFYPHMLSSGQKQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 148 RLHIARALLGSPALLLLDEPTNGLDPdialTVRT----LIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSG 222
Cdd:COG4167 157 RVALARALILQPKIIIADEALAALDM----SVRSqiinLMLELQEKlGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYG 232
|
....*...
gi 2538311617 223 SLEDIAAH 230
Cdd:COG4167 233 KTAEVFAN 240
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
28-222 |
2.04e-11 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 64.74 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 28 SLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHpQRARRHVGLaLGGDSGFYPRaSARDNLLF 105
Cdd:TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGvpLVQYDH-HYLHRQVAL-VGQEPVLFSG-SVRENIAY 577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 ---FADVAGVSGRSRRREVDHALARVELT-DAAARPF-QEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:TIGR00958 578 gltDTPDEEIMAAAKAANAHDFIMEFPNGyDTEVGEKgSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2538311617 181 TLiRSLAedGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSG 222
Cdd:TIGR00958 658 ES-RSRA--SRTVLLIAHRLSTVER-ADQILVLKKGSVVEMG 695
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
26-208 |
2.46e-11 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 62.68 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 26 RVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQrARRHVGLaLGGDSGFYPRASARDNLLF 105
Cdd:PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRRPVSM-LFQENNLFSHLTVAQNIGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 FADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRS 185
Cdd:PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
|
170 180
....*....|....*....|....
gi 2538311617 186 L-AEDGAAVLLTSHllgEIEDLAH 208
Cdd:PRK10771 175 VcQERQLTLLMVSH---SLEDAAR 195
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
7-198 |
3.47e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 61.90 E-value: 3.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 7 AAQLSRIFGTGERA--FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLL--TPTSGTLTVNGINaiahpqrarrh 82
Cdd:COG2401 27 VAIVLEAFGVELRVveRYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQ----------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 vglalggdsgFYPRASARDNLLFFADVAgvsgrsrrrEVDHALARVELTDAAA--RPFQEFSRGMKQRLHIARALLGSPA 160
Cdd:COG2401 96 ----------FGREASLIDAIGRKGDFK---------DAVELLNAVGLSDAVLwlRRFKELSTGQKFRFRLALLLAERPK 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 161 LLLLDEPTNGLDPDIALTVRTLIRSLA-EDGAAVLLTSH 198
Cdd:COG2401 157 LLVIDEFCSHLDRQTAKRVARNLQKLArRAGITLVVATH 195
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
24-198 |
3.81e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 61.50 E-value: 3.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRARRHVGLALGGDSGFYPRASARDNL 103
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS-IKKDLCTYQKQLCFVGHRSGINPYLTLRENC 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFfaDVAGVSGRsrrREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLI 183
Cdd:PRK13540 96 LY--DIHFSPGA---VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
|
170
....*....|....*
gi 2538311617 184 RSLAEDGAAVLLTSH 198
Cdd:PRK13540 171 QEHRAKGGAVLLTSH 185
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
11-218 |
4.23e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 63.72 E-value: 4.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 11 SRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHP--QRARRHVGLA 86
Cdd:PRK10261 327 SGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGqrIDTLSPGklQALRRDIQFI 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 87 LGGD-SGFYPRASARDNLLFFADVAGV-SGRSRRREVDHALARVELT-DAAARPFQEFSRGMKQRLHIARALLGSPALLL 163
Cdd:PRK10261 407 FQDPyASLDPRQTVGDSIMEPLRVHGLlPGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVII 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 164 LDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:PRK10261 487 ADEAVSALDVSIRGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
23-218 |
5.15e-11 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 60.52 E-value: 5.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHvGLAL-GGD---SGFYPRA 97
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPvTRRSPRDAIRA-GIAYvPEDrkrEGLVLDL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLlffadvagvsgrsrrrevdhALARVeltdaaarpfqeFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:cd03215 94 SVAENI--------------------ALSSL------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 178 TVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:cd03215 142 EIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-227 |
9.09e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 61.08 E-value: 9.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGEraftAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTL--LTP---TSGTLTVNGINAIAHP-Q 77
Cdd:PRK14247 3 KIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLieLYPearVSGEVYLDGQDIFKMDvI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 78 RARRHVGLalggdsgFYPRASARDNLLFFADVA-GV-------SGRSRRREVDHALARVELTDAAAR----PFQEFSRGM 145
Cdd:PRK14247 79 ELRRRVQM-------VFQIPNPIPNLSIFENVAlGLklnrlvkSKKELQERVRWALEKAQLWDEVKDrldaPAGKLSGGQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 146 KQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTsHLLGEIEDLAHTITVLGAGSVAVSGSLE 225
Cdd:PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVT-HFPQQAARISDYVAFLYKGQIVEWGPTR 230
|
..
gi 2538311617 226 DI 227
Cdd:PRK14247 231 EV 232
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
14-233 |
9.13e-11 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 61.09 E-value: 9.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRA--RRHVGLALggds 91
Cdd:cd03251 8 FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD-VRDYTLAslRRQIGLVS---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 92 gfyprasaRDNLLFFADVA-----GVSGRSrRREVDHAlARVeltdAAARPFQE----------------FSRGMKQRLH 150
Cdd:cd03251 83 --------QDVFLFNDTVAeniayGRPGAT-REEVEEA-ARA----ANAHEFIMelpegydtvigergvkLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 151 IARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ 226
|
...
gi 2538311617 231 AGI 233
Cdd:cd03251 227 GGV 229
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-216 |
1.07e-10 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 61.24 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLvLDAAQLSRIFGTG-----ERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAI 73
Cdd:PRK10419 1 MTL-LNVSGLSHHYAHGglsgkHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGepLAKL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 74 AHPQRA--RRHVGLAL-GGDSGFYPRASARDNLLF-FADVAGVSGRSRRREVDHALARVELTDAAA--RPfQEFSRGMKQ 147
Cdd:PRK10419 80 NRAQRKafRRDIQMVFqDSISAVNPRKTVREIIREpLRHLLSLDKAERLARASEMLRAVDLDDSVLdkRP-PQLSGGQLQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 148 RLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLqQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
31-198 |
1.41e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 59.56 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 31 ISSGEIHALLGPNGAGKTTTVQMCSTLLTP--TSGTLTVNGinaIAHPQRARRHVGLALGGDSgFYPRASARDNLLFFAD 108
Cdd:cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAgvITGEILING---RPLDKNFQRSTGYVEQQDV-HSPNLTVREALRFSAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 109 VAGVSGRSRRReVDHAlarVELtdaAARPFQEFsrgmkqrlhiarallgspalllLDEPTNGLDPDIALTVRTLIRSLAE 188
Cdd:cd03232 106 LRGLSVEQRKR-LTIG---VEL---AAKPSILF----------------------LDEPTSGLDSQAAYNIVRFLKKLAD 156
|
170
....*....|
gi 2538311617 189 DGAAVLLTSH 198
Cdd:cd03232 157 SGQAILCTIH 166
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-241 |
1.93e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 61.02 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTG-ERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGI----------NA 72
Cdd:PRK13631 21 ILRVKNLYCVFDEKqENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIyigdkknnheLI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 73 IAHPQRA-------RRHVGLALGgdsgfYPRASA-RDNL---LFFADVA-GVSGRSRRREVDHALARVELTDA--AARPF 138
Cdd:PRK13631 101 TNPYSKKiknfkelRRRVSMVFQ-----FPEYQLfKDTIekdIMFGPVAlGVKKSEAKKLAKFYLNKMGLDDSylERSPF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 139 qEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:PRK13631 176 -GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
250 260
....*....|....*....|....*....
gi 2538311617 219 AVSGSL------EDIAAHAGIAATTVVQV 241
Cdd:PRK13631 255 LKTGTPyeiftdQHIINSTSIQVPRVIQV 283
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
22-173 |
1.96e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 61.68 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLL-------TPTSGTLTVNGINaIAHPqRARRHVG--LA-----L 87
Cdd:NF033858 15 VALDDVSLDIPAGCMVGLIGPDGVGK-------SSLLsliagarKIQQGRVEVLGGD-MADA-RHRRAVCprIAympqgL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 88 GGDsgFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRL-------H-----Iaral 155
Cdd:NF033858 86 GKN--LYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLglccaliHdpdllI---- 159
|
170
....*....|....*...
gi 2538311617 156 lgspalllLDEPTNGLDP 173
Cdd:NF033858 160 --------LDEPTTGVDP 169
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
23-229 |
2.56e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 59.89 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIAHPQRA---RRHVGLALGGDSGFyPRASA 99
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG-KDITDWQTAkimREAVAIVPEGRRVF-SRMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLL---FFADvagvsgrsrRREVDHALARV-----ELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:PRK11614 98 EENLAmggFFAE---------RDQFQERIKWVyelfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 172 DPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAvsgsLEDIAA 229
Cdd:PRK11614 169 APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV----LEDTGD 222
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
27-224 |
2.58e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 61.22 E-value: 2.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLA-LGGD---SGFYPRASAR-- 100
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVyLPEDrqsSGLYLDAPLAwn 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 ------DNLLFFADvagvSGRSRRR-EVDHALARVELTDAAaRPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:PRK15439 362 vcalthNRRGFWIK----PARENAVlERYRRALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSvaVSGSL 224
Cdd:PRK15439 437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE--ISGAL 485
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
24-207 |
2.61e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 60.05 E-value: 2.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQmCSTLLTPTSGTLTVNG----INAIAHPQRA-----RRHVGLALGgDSGFY 94
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLK-CLNRMNELESEVRVEGrvefFNQNIYERRVnlnrlRRQVSMVHP-KPNLF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 PrASARDNLLFFADVAGVSGRSRRRE-VDHALARVELTDAAARPFQ----EFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:PRK14258 101 P-MSVYDNVAYGVKIVGWRPKLEIDDiVESALKDADLWDEIKHKIHksalDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 170 GLDPDIALTVRTLIRSLA-EDGAAVLLTSHLLGEIEDLA 207
Cdd:PRK14258 180 GLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQVSRLS 218
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
27-236 |
2.98e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 61.01 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLtPTSGTLTVNGI--NAIAHPQrARRHvgLALGGDSGFYPRASARDNLL 104
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIelRELDPES-WRKH--LSWVGQNPQLPHGTLRDNVL 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 105 FfadvagvsGRSRRRE--VDHALARV---------------ELTDAAARpfqeFSRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:PRK11174 445 L--------GNPDASDeqLQQALENAwvseflpllpqgldtPIGDQAAG----LSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 168 TNGLDpdiALTVRTLIRSL--AEDGAAVLLTSHLLgeiEDLAH--TITVLGAGSVAVSGSLEDIAAHAGIAAT 236
Cdd:PRK11174 513 TASLD---AHSEQLVMQALnaASRRQTTLMVTHQL---EDLAQwdQIWVMQDGQIVQQGDYAELSQAGGLFAT 579
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
23-223 |
4.76e-10 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 58.78 E-value: 4.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLALgGDSGFYPRaSARD 101
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSlRSMIGVVL-QDTFLFSG-TIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFFADVAgvsgrsRRREVDHALARVELTD-----------AAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:cd03254 96 NIRLGRPNA------TDEEVIEAAKEAGAHDfimklpngydtVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSN 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 171 LDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGS 223
Cdd:cd03254 170 IDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGT 220
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
2-215 |
6.16e-10 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 58.67 E-value: 6.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 2 SLVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRA 79
Cdd:PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpMSKLSSAAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 --RRHvglALGGDSGFY---PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARA 154
Cdd:PRK11629 83 elRNQ---KLGFIYQFHhllPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 155 LLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLG---------EIED--LAHTITVLGA 215
Cdd:PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDLQlakrmsrqlEMRDgrLTAELSLMGA 232
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
23-233 |
8.71e-10 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 59.79 E-value: 8.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLAL-------Ggdsgfy 94
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESlRRQIGVVPqdtflfsG------ 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 praSARDNLLFFADVAGvsgrsrRREVDHALARVELTD-AAARPFQ----------EFSRGMKQRLHIARALLGSPALLL 163
Cdd:COG1132 429 ---TIRENIRYGRPDAT------DEEVEEAAKAAQAHEfIEALPDGydtvvgergvNLSGGQRQRIAIARALLKDPPILI 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 164 LDEPTNGLDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGI 233
Cdd:COG1132 500 LDEATSALDTETEALIQEALERLMK-GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEELLARGGL 567
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-227 |
8.71e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 58.57 E-value: 8.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSG-------TLTVNGINAIAHPQRARRHVGLALGGDSGFy 94
Cdd:PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgdvLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 pRASARDNLLFFADVAGVSGRSRRREVDHA-LARVELTDA-----AARPFQeFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:PRK14271 114 -PMSIMDNVLAGVRAHKLVPRKEFRGVAQArLTEVGLWDAvkdrlSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPT 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 169 NGLDPDIALTVRTLIRSLAeDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK14271 192 SALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-227 |
9.44e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 59.05 E-value: 9.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQ-MCSTL---LTPTSGTLTVNGINAIAHPQRA 79
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKaICGVTkdnWRVTADRMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVglaLGGD---------SGFYPRASARDNLLFFADVAGVSGRS------RRREVDHALARVELTD--AAARPFQ-EF 141
Cdd:PRK15093 83 RRKL---VGHNvsmifqepqSCLDPSERVGRQLMQNIPGWTYKGRWwqrfgwRKRRAIELLHRVGIKDhkDAMRSFPyEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 142 SRGMKQRLHIARALLGSPALLLLDEPTNGLDPDI-ALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAV 220
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTqAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
|
....*..
gi 2538311617 221 SGSLEDI 227
Cdd:PRK15093 240 TAPSKEL 246
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
23-232 |
9.62e-10 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 59.75 E-value: 9.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAiahpQRARRHvglALGGDSGFYPR------ 96
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL----KDIDRH---TLRQFINYLPQepyifs 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLFFADvAGVSgrsrRREVDHALARVELTDAAARPFQEF-----------SRGMKQRLHIARALLGSPALLLLD 165
Cdd:TIGR01193 562 GSILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYqtelseegssiSGGQKQRIALARALLTDSKVLILD 636
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 166 EPTNGLDpdiALTVRTLIRSLAE-DGAAVLLTSHLLgEIEDLAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:TIGR01193 637 ESTSNLD---TITEKKIVNNLLNlQDKTIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
27-198 |
1.04e-09 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 58.27 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGiNAIA---------HP------QRARRHVGLALggdS 91
Cdd:COG4598 27 VSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGG-EEIRlkpdrdgelVPadrrqlQRIRTRLGMVF---Q 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 92 GF--YPRASARDNLLFfADVAgVSGRSRRREVDHA---LARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:COG4598 103 SFnlWSHMTVLENVIE-APVH-VLGRPKAEAIERAealLAKVGLADKRDAYPAHLSGGQQQRAAIARALAMEPEVMLFDE 180
|
170 180 190
....*....|....*....|....*....|..
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:COG4598 181 PTSALDPELVGEVLKVMRDLAEEGRTMLVVTH 212
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-227 |
1.51e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 59.10 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG----------INAI 73
Cdd:PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmllrrrsrqvIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 74 AHPQRARRHVglaLGGDSGFY---PRASARDNLLFFADVA-------GVSGRSRRREVDHALARVELTDAAA---RPFQE 140
Cdd:PRK10261 92 EQSAAQMRHV---RGADMAMIfqePMTSLNPVFTVGEQIAesirlhqGASREEAMVEAKRMLDQVRIPEAQTilsRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 141 FSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGA-AVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
....*...
gi 2538311617 220 VSGSLEDI 227
Cdd:PRK10261 249 ETGSVEQI 256
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
21-189 |
1.70e-09 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 57.35 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLL---------TP---TSGTLTVNGINaIAHPQ----RARRHVG 84
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGK-------STLLrclnrmndlIPgarVEGEILLDGED-IYDPDvdvvELRRRVG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 LAlggdsgF-----YPRaSARDNLLFfadvaG--VSGRSRRREVDhalARVE--LTDAA---------ARPFQEFSRGMK 146
Cdd:COG1117 96 MV------FqkpnpFPK-SIYDNVAY-----GlrLHGIKSKSELD---EIVEesLRKAAlwdevkdrlKKSALGLSGGQQ 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED 189
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD 203
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
24-198 |
1.95e-09 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 56.07 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIaHPQRARRHVGLALGGDSGFypRASARD 101
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGadISQW-DPNELGDHVGYLPQDDELF--SGSIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLffadvagvsgrsrrrevdhalarveltdaaarpfqefSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRT 181
Cdd:cd03246 95 NIL-------------------------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
|
170
....*....|....*..
gi 2538311617 182 LIRSLAEDGAAVLLTSH 198
Cdd:cd03246 138 AIAALKAAGATRIVIAH 154
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
27-198 |
2.80e-09 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 54.76 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHpqrarrhvglalggdsgfyprasardnllff 106
Cdd:cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGY------------------------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 107 advagvsgrsrrrevdhalarveltdaaarpFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDialTVRTLIRSL 186
Cdd:cd03221 68 -------------------------------FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE---SIEALEEAL 113
|
170
....*....|..
gi 2538311617 187 AEDGAAVLLTSH 198
Cdd:cd03221 114 KEYPGTVILVSH 125
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
23-219 |
3.54e-09 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 57.72 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHvGLAL----GGDSGFYPRA 97
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPvRIRSPRDAIRA-GIAYvpedRKGEGLVLDL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDN--LLFFADVAG---VSGRSRRREVDHALARVEL-TDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:COG1129 346 SIRENitLASLDRLSRgglLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGI 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 172 DpdialtVRT------LIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:COG1129 426 D------VGAkaeiyrLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
22-216 |
3.80e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.53 E-value: 3.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLT--PTSGTLTVNGINAIAHPQRARRHVGLAL-GGDSGFYPRAS 98
Cdd:TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKASNIRDTERAGIVIiHQELTLVPELS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFFADVAGVSGRSRRREVDHA----LARVELTDA-AARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRaknlLRELQLDADnVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 174 DIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:TIGR02633 175 KETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
23-232 |
4.30e-09 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 57.66 E-value: 4.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHPQRA--RRHVGLALgGDSGFYPRaSAR 100
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD-IRTVTRAslRRNIAVVF-QDAGLFNR-SIE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFfadvagvsGR--SRRREVDHALARVELTDAAARPFQEF-----------SRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:PRK13657 427 DNIRV--------GRpdATDEEMRAAAERAQAHDFIERKPDGYdtvvgergrqlSGGERQRLAIARALLKDPPILILDEA 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 168 TNGLDpdiALTVRTLIRSLAE--DGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAG 232
Cdd:PRK13657 499 TSALD---VETEAKVKAALDElmKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELVARGG 561
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
27-196 |
4.82e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 56.00 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLL-----TPTSGTLTVNGINAIA---HPQRARRHVGLALGGDSGFyPRAS 98
Cdd:PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGRNIYSpdvDPIEVRREVGMVFQYPNPF-PHLT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFFADVAG-VSGRSRRRE-VDHALARVELTDAAARPFQEF----SRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:PRK14267 102 IYDNVAIGVKLNGlVKSKKELDErVEWALKKAALWDEVKDRLNDYpsnlSGGQRQRLVIARALAMKPKILLMDEPTANID 181
|
170 180
....*....|....*....|....
gi 2538311617 173 PDIALTVRTLIRSLAEDGAAVLLT 196
Cdd:PRK14267 182 PVGTAKIEELLFELKKEYTIVLVT 205
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-227 |
4.93e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 56.66 E-value: 4.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTP---TSGTLTVNGINAIAHPQ 77
Cdd:PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREILNLPE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 78 RARRhvglalggdsgfypRASARDNLLFFADV---------------------AGVSGRSRRREVDHALARVELTDAAAR 136
Cdd:PRK09473 89 KELN--------------KLRAEQISMIFQDPmtslnpymrvgeqlmevlmlhKGMSKAEAFEESVRMLDAVKMPEARKR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 137 ----PfQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTIT 211
Cdd:PRK09473 155 mkmyP-HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITHDLGVVAGICDKVL 233
|
250
....*....|....*.
gi 2538311617 212 VLGAGSVAVSGSLEDI 227
Cdd:PRK09473 234 VMYAGRTMEYGNARDV 249
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
27-227 |
5.30e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 56.81 E-value: 5.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN---------GINAIAHpqraRRHVGLALGgDSGFYPRA 97
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNgrvlfdaekGICLPPE----KRRIGYVFQ-DARLFPHY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLF---------FADVAGVSGrsrrreVDHALARVELTdaaarpfqeFSRGMKQRLHIARALLGSPALLLLDEPT 168
Cdd:PRK11144 92 KVRGNLRYgmaksmvaqFDKIVALLG------IEPLLDRYPGS---------LSGGEKQRVAIGRALLTAPELLLMDEPL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 169 NGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK11144 157 ASLDLPRKRELLPYLERLAREiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
14-223 |
5.64e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 57.14 E-value: 5.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQmcstLLT----PTSGTLTVNGINAIAHPQRARR-------- 81
Cdd:PRK11160 346 FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ----LLTrawdPQQGEILLNGQPIADYSEAALRqaisvvsq 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 82 --HVglalggdsgFypRASARDNLLFFADVAGVSgrsrrrEVDHALARVELT---------DA----AARPFqefSRGMK 146
Cdd:PRK11160 422 rvHL---------F--SATLRDNLLLAAPNASDE------ALIEVLQQVGLEklleddkglNAwlgeGGRQL---SGGEQ 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDLAHtITVLGAGSVAVSGS 223
Cdd:PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITHRLTGLEQFDR-ICVMDNGQIIEQGT 556
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
19-248 |
5.67e-09 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 55.99 E-value: 5.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 19 RAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPT--------SGTLTVNG--INAIAHPQRARRHVGLALG 88
Cdd:PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGepLAAIDAPRLARLRAVLPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 89 GDSGFypRASARDNLLF----FADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARA---------L 155
Cdd:PRK13547 92 AQPAF--AFSAREIVLLgrypHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVlaqlwpphdA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 156 LGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIA 234
Cdd:PRK13547 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIA 249
|
250
....*....|....
gi 2538311617 235 ATTVVQVEATATEG 248
Cdd:PRK13547 250 RCYGFAVRLVDAGD 263
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
9-213 |
6.76e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 56.94 E-value: 6.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 9 QLSRIfgtgERAF---TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGL 85
Cdd:PRK10762 6 QLKGI----DKAFpgvKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 AL-GGDSGFYPRASARDNLL----FFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPA 160
Cdd:PRK10762 82 GIiHQELNLIPQLTIAENIFlgreFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 161 LLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-233 |
7.16e-09 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 55.24 E-value: 7.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIaHPQRARRHVGL-----ALggdsgFYprASA 99
Cdd:cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGvdIRDL-NLRWLRSQIGLvsqepVL-----FD--GTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSgrsrrrEVDHALARVEL------------TDAAARPFQeFSRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:cd03249 94 AENIRYGKPDATDE------EVEEAAKKANIhdfimslpdgydTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 168 TNGLDPDIALTVRTLIRSLAEdGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGI 233
Cdd:cd03249 167 TSALDAESEKLVQEALDRAMK-GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQKGV 230
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
22-213 |
8.11e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 56.48 E-value: 8.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLLTPTSG----------------TLTVNGINAIAHPQRARRHVGL 85
Cdd:PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGK-------STLMKVLSGvyphgtyegeiifegeELQASNIRDTERAGIAIIHQEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 86 ALggdsgfYPRASARDNLlFFADVAGVSGR----SRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPAL 161
Cdd:PRK13549 92 AL------VKELSVLENI-FLGNEITPGGImdydAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 162 LLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
113-236 |
1.27e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 55.87 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 113 SGRSRRREVDHALARVELtDAAAR---PfQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED 189
Cdd:PRK15134 397 SAAQREQQVIAVMEEVGL-DPETRhryP-AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2538311617 190 -GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAHAGIAAT 236
Cdd:PRK15134 475 hQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYT 522
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-198 |
1.38e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 55.84 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 3 LVLDAAQLSriFGTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVnGINA-IAH-PQRAr 80
Cdd:COG0488 314 KVLELEGLS--KSYGDK--TLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVkIGYfDQHQ- 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 rhvglalggdSGFYPRASARDNLlffadvAGVSGRSRRREVDHALARVELT-DAAARPFQEFSRGMKQRLHIARALLGSP 159
Cdd:COG0488 388 ----------EELDPDKTVLDEL------RDGAPGGTEQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPP 451
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2538311617 160 ALLLLDEPTNGLDPDialTVRTLIRSLAE-DGaAVLLTSH 198
Cdd:COG0488 452 NVLLLDEPTNHLDIE---TLEALEEALDDfPG-TVLLVSH 487
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
19-230 |
1.56e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 54.82 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 19 RAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG-INAIAHpqrarrhvglalggDSGFYPRA 97
Cdd:PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGeVSVIAI--------------SAGLSGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIAL 177
Cdd:PRK13546 101 TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 178 TVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:PRK13546 181 KCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
21-227 |
2.08e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 54.22 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRARRhVGL-----ALGGD--- 90
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGehIQHYASKEVARR-IGLlaqnaTTPGDitv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 91 -----SGFYPRASardnlLFfadvagvsGRSRRRE---VDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:PRK10253 99 qelvaRGRYPHQP-----LF--------TRWRKEDeeaVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
21-229 |
2.44e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 55.19 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 21 FTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTL--LTPTSG------------------------------TLTVN 68
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGriiyhvalcekcgyverpskvgepcpvcggTLEPE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 69 GINAI----AHPQRARRHVGLALGGDSGFYPRASARDNLLFFADVAGVSGRsrrREVDHALARVELTDAAARPF---QEF 141
Cdd:TIGR03269 93 EVDFWnlsdKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGK---EAVGRAVDLIEMVQLSHRIThiaRDL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 142 SRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAV 220
Cdd:TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAsGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
|
....*....
gi 2538311617 221 SGSLEDIAA 229
Cdd:TIGR03269 250 EGTPDEVVA 258
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
23-213 |
2.54e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 55.18 E-value: 2.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLLTPTSG----------------TLTVNGINA-------IAHPQra 79
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGK-------STLMKVLSGvyphgsyegeilfdgeVCRFKDIRDsealgivIIHQE-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 rrhvgLALggdsgfYPRASARDNLLFFADVA--GVSGRSR-RREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALL 156
Cdd:NF040905 87 -----LAL------IPYLSIAENIFLGNERAkrGVIDWNEtNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALS 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:NF040905 156 KDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVL 212
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-216 |
4.01e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 54.33 E-value: 4.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 5 LDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLL-TP----TSGTLTVNGINAIAHPQRA 79
Cdd:PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLpSPpvvyPSGDIRFHGESLLHASEQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 RRHVGlalgGD----------SGFYPRASARDNLlffADV----AGVSGRSRRREVDHALARVELTDAAAR----PFQeF 141
Cdd:PRK15134 86 LRGVR----GNkiamifqepmVSLNPLHTLEKQL---YEVlslhRGMRREAARGEILNCLDRVGIRQAAKRltdyPHQ-L 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 142 SRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELqQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
19-219 |
9.18e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 53.25 E-value: 9.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 19 RAFTAVDRVSLRISSGEIHALLGPNGAGKTTTvqMCSTLLTP--TSGTLTVNGI------------NAIAHPQRARRhvg 84
Cdd:PRK09700 274 RDRKKVRDISFSVCRGEILGFAGLVGSGRTEL--MNCLFGVDkrAGGEIRLNGKdisprspldavkKGMAYITESRR--- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 lalggDSGFYPRASARDNL--LFFADVAGVSG-------RSRRREVDHALARVELTDAAA-RPFQEFSRGMKQRLHIARA 154
Cdd:PRK09700 349 -----DNGFFPNFSIAQNMaiSRSLKDGGYKGamglfheVDEQRTAENQRELLALKCHSVnQNITELSGGNQQKVLISKW 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 155 LLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
14-247 |
9.94e-08 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 52.46 E-value: 9.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 14 FGTGERAFtaVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAiahPQRARRHVGLALGGDSGF 93
Cdd:PRK11831 15 FTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI---PAMSRSRLYTVRKRMSML 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 YPRASARDNLLFFADVA-------GVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK11831 90 FQSGALFTDMNVFDNVAyplrehtQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 167 PTNGLDPdiaLTVRTLIRSlaedgaavlltshllgeIEDLAHTitvLGAGSVAVSGSLED---IAAHAGIAATTVVQVEA 243
Cdd:PRK11831 170 PFVGQDP---ITMGVLVKL-----------------ISELNSA---LGVTCVVVSHDVPEvlsIADHAYIVADKKIVAHG 226
|
....
gi 2538311617 244 TATE 247
Cdd:PRK11831 227 SAQA 230
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
27-225 |
1.09e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 51.95 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKtttvqmcSTLL---------TPTSGTLTVNGINAIAHPQRARRHVGLALggdsGF-YPr 96
Cdd:CHL00131 26 LNLSINKGEIHAIMGPNGSGK-------STLSkviaghpayKILEGDILFKGESILDLEPEERAHLGIFL----AFqYP- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 asardnllffADVAGVSG--------RSRRR-----EVD---------HALARVELTDA-AARPFQE-FSRGMKQRLHIA 152
Cdd:CHL00131 94 ----------IEIPGVSNadflrlayNSKRKfqglpELDplefleiinEKLKLVGMDPSfLSRNVNEgFSGGEKKRNEIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 153 RALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH---LLGEIE-DLAHTIT---VLGAGSVAVSGSLE 225
Cdd:CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHyqrLLDYIKpDYVHVMQngkIIKTGDAELAKELE 243
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
23-196 |
1.39e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 51.70 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTL--LTP---TSGTLTVNGINaIAHPQ----RARRHVGLALGGDSGF 93
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPevtITGSIVYNGHN-IYSPRtdtvDLRKEIGMVFQQPNPF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 yPrASARDNLLFFADVAGVSGRSRrreVDHAlarVELTDAAARPFQE-----------FSRGMKQRLHIARALLGSPALL 162
Cdd:PRK14239 99 -P-MSIYENVVYGLRLKGIKDKQV---LDEA---VEKSLKGASIWDEvkdrlhdsalgLSGGQQQRVCIARVLATSPKII 170
|
170 180 190
....*....|....*....|....*....|....
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLT 196
Cdd:PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
22-230 |
1.46e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 52.96 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKtttvqmcSTLLTPTSGTLTVNG------INAIAHPQRARRHVGLaLGGDSGFYP 95
Cdd:PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGK-------STLLNALAGRIQGNNftgtilANNRKPTKQILKRTGF-VTQDDILYP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 RASARDNLLFFADVAGVSGRSRRREVDHA--------LARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:PLN03211 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAesviselgLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 168 TNGLDPDIALTVRTLIRSLAEDGAAVLLTSHL-LGEIEDLAHTITVLGAGSVAVSGSLEDIAAH 230
Cdd:PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
17-202 |
1.57e-07 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 51.60 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 17 GERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLtvnginaiahpqrarrhvgLAlggdsGFYPR 96
Cdd:PRK11247 23 GER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-------------------LA-----GTAPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNL-LFFADVA-------------GVSGRSRRREVDhALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALL 162
Cdd:PRK11247 77 AEAREDTrLMFQDARllpwkkvidnvglGLKGQWRDAALQ-ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2538311617 163 LLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHLLGE 202
Cdd:PRK11247 156 LLDEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSE 196
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
20-200 |
1.97e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 51.63 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 20 AFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTL-----------------TVNGINAIAHPQRA--- 79
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkkktkekeKVLEKLVIQKTRFKkik 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 80 -----RRHVGLALGGDSGFYPRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAAR--PFqEFSRGMKQRLHIA 152
Cdd:PRK13651 99 kikeiRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQrsPF-ELSGGQKRRVALA 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2538311617 153 RALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLL 200
Cdd:PRK13651 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-198 |
2.40e-07 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 50.93 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 4 VLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIAHPQRAR- 80
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGqpLHQMDEEARAKl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 81 --RHVGLALggdSGFY--PRASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALL 156
Cdd:PRK10584 86 raKHVGFVF---QSFMliPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVL-LTSH 198
Cdd:PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLiLVTH 205
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-213 |
2.46e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.21 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 33 SGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVN-------------------------GINAIAHPQrarrHVGLal 87
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPpdwdeildefrgselqnyftkllegDVKVIVKPQ----YVDL-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 88 ggdsgfYPRA---SARDNLlffadvagvSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:cd03236 99 ------IPKAvkgKVGELL---------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFF 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:cd03236 164 DEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
25-211 |
3.05e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.55 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 25 DRVSLRISSGEIHALLGPNGAGKtttvqmcSTLLTPTSGTltvnginaiaHPQ----------RAR----------RHVG 84
Cdd:PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGK-------STLLSLITGD----------HPQgysndltlfgRRRgsgetiwdikKHIG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 85 L---ALGGDsgFYPRASARDNLL--FFaDVAG----VSGRSRRReVDHALARVELTDAAAR-PFQEFSRGmKQRLH-IAR 153
Cdd:PRK10938 340 YvssSLHLD--YRVSTSVRNVILsgFF-DSIGiyqaVSDRQQKL-AQQWLDILGIDKRTADaPFHSLSWG-QQRLAlIVR 414
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 154 ALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLL-TSHllgEIEDLAHTIT 211
Cdd:PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLfVSH---HAEDAPACIT 470
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
25-198 |
3.18e-07 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 51.60 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 25 DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAH-PQrarrhvglalggDSGFYPRASARDNL 103
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGLRIGYlPQ------------EPPLDDDLTVLDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LffadvAGVSGRSR-RREVDHALARVELTDAAA-------------------------------------RPFQEFSRGM 145
Cdd:COG0488 83 L-----DGDAELRAlEAELEELEAKLAEPDEDLerlaelqeefealggweaearaeeilsglgfpeedldRPVSELSGGW 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 146 KQRLHIARALLGSPALLLLDEPTNGLDpdiALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:COG0488 158 RRRVALARALLSEPDLLLLDEPTNHLD---LESIEWLEEFLKNYPGTVLVVSH 207
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
34-198 |
3.58e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.03 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 34 GEIHALLGPNGAGKTTTVQMCSTLLTP---TSGTLTVNGI-------NAIAHPQRARRHVglalggdsgfyPRASARDNL 103
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRpldssfqRSIGYVQQQDLHL-----------PTSTVRESL 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 LFFADV---AGVSGRSRRREVDHALARVELTDAA----ARPFQEFSRGMKQRLHIA-RALLGSPALLLLDEPTNGLDPDI 175
Cdd:TIGR00956 858 RFSAYLrqpKSVSKSEKMEYVEEVIKLLEMESYAdavvGVPGEGLNVEQRKRLTIGvELVAKPKLLLFLDEPTSGLDSQT 937
|
170 180
....*....|....*....|...
gi 2538311617 176 ALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:TIGR00956 938 AWSICKLMRKLADHGQAILCTIH 960
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-229 |
4.04e-07 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 50.56 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 1 MSLVLDAAQLSRIF--GTG---ERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGinaiaH 75
Cdd:PRK15112 1 VETLLEVRNLSKTFryRTGwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD-----H 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 76 P-------QRARRHVGLALGGDSGFYPRASARDNLLFFADV-AGVSGRSRRREVDHALARVEL-TDAAARPFQEFSRGMK 146
Cdd:PRK15112 76 PlhfgdysYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLnTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 147 QRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAED-GAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLE 225
Cdd:PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235
|
....
gi 2538311617 226 DIAA 229
Cdd:PRK15112 236 DVLA 239
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-207 |
4.77e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 51.32 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 33 SGEIHALLGPNGAGKTTTVQMCSTLLTPT-----------------SGT--------LTVNGINAIAHPQrarrHVGLAl 87
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNlgdydeepswdevlkrfRGTelqdyfkkLANGEIKVAHKPQ----YVDLI- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 88 ggdsgfyPRA---SARDnLLFFADVAGVsgrsrrreVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLL 164
Cdd:COG1245 173 -------PKVfkgTVRE-LLEKVDERGK--------LDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFF 236
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2538311617 165 DEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHllgeieDLA 207
Cdd:COG1245 237 DEPSSYLDIYQRLNVARLIRELAEEGKYVLVVEH------DLA 273
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
27-223 |
6.10e-07 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 49.41 E-value: 6.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAH--PQRARRHVG------LALGGdsgfypraS 98
Cdd:cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVD-ISKigLHDLRSRISiipqdpVLFSG--------T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 99 ARDNLLFFadvagvsGRSRRREVDHALARVELTDA-AARPFQE----------FSRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:cd03244 94 IRSNLDPF-------GEYSDEELWQALERVGLKEFvESLPGGLdtvveeggenLSVGQRQLLCLARALLRKSKILVLDEA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 168 TNGLDPDIALTVRTLIRSlAEDGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGS 223
Cdd:cd03244 167 TASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
24-218 |
6.88e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 50.59 E-value: 6.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQ-MCSTLLTPTSGTLTVNGIN-AIAHPQRARRHvGLALGGDS----GFYPRA 97
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGKPvDIRNPAQAIRA-GIAMVPEDrkrhGIVPIL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 98 SARDNLLF-----FADVAGVSGRSRRREVDHALARVELTDAAAR-PFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:TIGR02633 355 GVGKNITLsvlksFCFKMRIDAAAELQIIGSAIQRLKVKTASPFlPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2538311617 172 DPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSV 218
Cdd:TIGR02633 435 DVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
34-207 |
8.73e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.19 E-value: 8.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 34 GEIHALLGPNGAGKTTTVQMCSTLLTPT-----------------SGT--------LTVNGINAIAHPQrarrHVGLAlg 88
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSGELIPNlgdyeeepswdevlkrfRGTelqnyfkkLYNGEIKVVHKPQ----YVDLI-- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 89 gdsgfyPRA---SARDnLLFFADVAGVsgrsrRREVdhaLARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLD 165
Cdd:PRK13409 173 ------PKVfkgKVRE-LLKKVDERGK-----LDEV---VERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2538311617 166 EPTNGLDPDIALTVRTLIRSLAEdGAAVLLTSHllgeieDLA 207
Cdd:PRK13409 238 EPTSYLDIRQRLNVARLIRELAE-GKYVLVVEH------DLA 272
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
2-216 |
1.51e-06 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 48.03 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 2 SLVLDAAQLSRIFGTGERAFTAVDRVSLRISSGEIHALLGPNGAGKTTTVqMCSTLLTPT----SGTLTVNGINAIAHPQ 77
Cdd:cd03233 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLL-KALANRTEGnvsvEGDIHYNGIPYKEFAE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 78 RARRHVGLALGGDSGFyPRASARDNLLFFAD------VAGVSGrsrrrevdhalarveltdaaarpfqefsrGMKQRLHI 151
Cdd:cd03233 80 KYPGEIIYVSEEDVHF-PTLTVRETLDFALRckgnefVRGISG-----------------------------GERKRVSI 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538311617 152 ARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTShLL---GEIEDLAHTITVLGAG 216
Cdd:cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS-LYqasDEIYDLFDKVLVLYEG 196
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
41-199 |
4.22e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 46.79 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 41 GPNGAGKTTTVQMCSTLLTPTSGTLTV--NGINAIAHPQRARrhvglaLGGDSGFYPRASARDNLLFFADVAGVSgrsrr 118
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYknCNINNIAKPYCTY------IGHNLGLKLEMTVFENLKFWSEIYNSA----- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 119 REVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
|
.
gi 2538311617 199 L 199
Cdd:PRK13541 182 L 182
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-198 |
4.39e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 3 LVLDAAQLSRIFGtgERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRh 82
Cdd:TIGR03719 321 KVIEAENLTKAFG--DK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVKLAYVDQSRD- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 83 vglALGGDSGFYPRASARDNLLffaDVAGVSGRSRRRevdhaLARVELTDAA-ARPFQEFSRGMKQRLHIARALLGSPAL 161
Cdd:TIGR03719 396 ---ALDPNKTVWEEISGGLDII---KLGKREIPSRAY-----VGRFNFKGSDqQKKVGQLSGGERNRVHLAKTLKSGGNV 464
|
170 180 190
....*....|....*....|....*....|....*..
gi 2538311617 162 LLLDEPTNGLDPDialTVRTLIRSLAEDGAAVLLTSH 198
Cdd:TIGR03719 465 LLLDEPTNDLDVE---TLRALEEALLNFAGCAVVISH 498
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-233 |
4.72e-06 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLAlggdsgfyPRasarDNLLF 105
Cdd:cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSlRRAIGVV--------PQ----DTVLF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 FADVagvsgrsrrrEVDHALARVELTD----AAAR-----------PFQ----------EFSRGMKQRLHIARALLGSPA 160
Cdd:cd03253 88 NDTI----------GYNIRYGRPDATDeeviEAAKaaqihdkimrfPDGydtivgerglKLSGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 161 LLLLDEPTNGLDpdiALTVRTLIRSLAE--DGAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGI 233
Cdd:cd03253 158 ILLLDEATSALD---THTEREIQAALRDvsKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAKGGL 228
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
27-230 |
5.09e-06 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 47.82 E-value: 5.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGInAIAH--PQRARRHVGLaLGGDSGFYPrASARDNLL 104
Cdd:COG4618 351 VSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGA-DLSQwdREELGRHIGY-LPQDVELFD-GTIAENIA 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 105 FFADVagvsgrsRRREVDHA--LARV-------------ELTDAAARpfqeFSRGMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:COG4618 428 RFGDA-------DPEKVVAAakLAGVhemilrlpdgydtRIGEGGAR----LSGGQRQRIGLARALYGDPRLVVLDEPNS 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDGAAVLLTSH---LLGEIEDLAhtitVLGAGSVAVSGSLEDIAAH 230
Cdd:COG4618 497 NLDDEGEAALAAAIRALKARGATVVVITHrpsLLAAVDKLL----VLRDGRVQAFGPRDEVLAR 556
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
27-198 |
8.41e-06 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 46.32 E-value: 8.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGI-------NAIAH-----PQRARRHVGLALGG--DSG 92
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQpleswssKAFARkvaylPQQLPAAEGMTVRElvAIG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 93 FYPRASArdnllffadvAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:PRK10575 110 RYPWHGA----------LGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
170 180
....*....|....*....|....*..
gi 2538311617 173 PDIALTVRTLIRSLA-EDGAAVLLTSH 198
Cdd:PRK10575 180 IAHQVDVLALVHRLSqERGLTVIAVLH 206
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
23-227 |
8.55e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.03 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVGLAL-GGDSGFYPRASARD 101
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMvHQELNLVLQRSVMD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFfadvagvsGRSRRRE--VDHAlarvELTDAAARPFQE-------------FSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK10982 93 NMWL--------GRYPTKGmfVDQD----KMYRDTKAIFDEldididprakvatLSVSQMQMIEIAKAFSYNAKIVIMDE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVAVSGSLEDI 227
Cdd:PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
38-198 |
9.23e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 47.16 E-value: 9.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 38 ALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAhpQRARRHV-GLALGGDSGFY--------PRASARDNLLFFad 108
Cdd:PLN03073 539 AMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA--VFSQHHVdGLDLSSNPLLYmmrcfpgvPEQKLRAHLGSF-- 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 109 vaGVSGrsrrrevdhalarveltDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDialTVRTLIRSLAE 188
Cdd:PLN03073 615 --GVTG-----------------NLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALIQGLVL 672
|
170
....*....|
gi 2538311617 189 DGAAVLLTSH 198
Cdd:PLN03073 673 FQGGVLMVSH 682
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
27-219 |
1.44e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 46.44 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGIN-AIAHPQRARRHvGLALGGDS----GFYPRASARD 101
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPiDIRSPRDAIRA-GIMLCPEDrkaeGIIPVHSVAD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLlffadvaGVSGR----------SRRREVDHALARVEL----TDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEP 167
Cdd:PRK11288 351 NI-------NISARrhhlragcliNNRWEAENADRFIRSlnikTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 168 TNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAGSVA 219
Cdd:PRK11288 424 TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
31-94 |
1.52e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.87 E-value: 1.52e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 31 ISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQR--------ARRHVGLALGGDSGFY 94
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYidlsggelQRVAIAAALLRNATFY 93
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
22-198 |
2.37e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.10 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 22 TAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRhvglALGgdsgfyPRASARD 101
Cdd:PRK11147 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA----ELD------PEKTVMD 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLlffADvaG-----VSGRSRrrevdHALARveLTD------AAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNG 170
Cdd:PRK11147 403 NL---AE--GkqevmVNGRPR-----HVLGY--LQDflfhpkRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470
|
170 180
....*....|....*....|....*...
gi 2538311617 171 LDPDialTVRTLIRSLAEDGAAVLLTSH 198
Cdd:PRK11147 471 LDVE---TLELLEELLDSYQGTVLLVSH 495
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
23-207 |
3.27e-05 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 45.08 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHV----------GLA-LG--- 88
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVrsdiqmifqdPLAsLNprm 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 89 --GD------SGFYPRASArdnllffADVagvsgrsrRREVDHALARVEL-TDAAARPFQEFSRGMKQRLHIARALLGSP 159
Cdd:PRK15079 116 tiGEiiaeplRTYHPKLSR-------QEV--------KDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEP 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2538311617 160 ALLLLDEPTNGLDPDIALTVRTLIRSL-AEDGAAVLLTSHllgeieDLA 207
Cdd:PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLqREMGLSLIFIAH------DLA 223
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
23-219 |
5.86e-05 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 43.56 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIAHP--QRARRHVGLALGGDSGFypRASAR 100
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID-ISTIplEDLRSSLTIIPQDPTLF--SGTIR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 101 DNLLFFadvagvsGRSRRREVDHALARVELTDaaarpfqEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:cd03369 100 SNLDPF-------DEYSDEEIYGALRVSEGGL-------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ 165
|
170 180 190
....*....|....*....|....*....|....*....
gi 2538311617 181 TLIRSLAEDgAAVLLTSHLLGEIEDLAHtITVLGAGSVA 219
Cdd:cd03369 166 KTIREEFTN-STILTIAHRLRTIIDYDK-ILVMDAGEVK 202
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-67 |
1.12e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 43.57 E-value: 1.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 2 SLVLDAAQLSRIFGtgERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTV 67
Cdd:PRK11819 322 DKVIEAENLSKSFG--DR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
15-226 |
1.16e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 43.62 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 15 GTGERafTAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTltvnginaiahpqrarrhVGLALGGDSGFY 94
Cdd:PRK10636 321 GYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE------------------IGLAKGIKLGYF 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 95 prasARDNLLFF-ADVAGVSGRSR--RREVDHALaRVELT------DAAARPFQEFSRGMKQRLHIARALLGSPALLLLD 165
Cdd:PRK10636 381 ----AQHQLEFLrADESPLQHLARlaPQELEQKL-RDYLGgfgfqgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 166 EPTNGLDPDI--ALTvRTLIRSlaeDGAAVLLT--SHLLGEIED---LAHTitvlgaGSVAV-SGSLED 226
Cdd:PRK10636 456 EPTNHLDLDMrqALT-EALIDF---EGALVVVShdRHLLRSTTDdlyLVHD------GKVEPfDGDLED 514
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
27-217 |
1.17e-04 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 42.46 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTtvqMCSTLL---TPTSGTLTVNGinAIAH-PQRArrhvglalggdsgFYPRASARDN 102
Cdd:cd03250 24 INLEVPKGELVAIVGPVGSGKSS---LLSALLgelEKLSGSVSVPG--SIAYvSQEP-------------WIQNGTIREN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFAdvagvsgrsrrrEVDHALARVELTDAAARP-FQEF---------------SRGMKQRLHIARALLGSPALLLLDE 166
Cdd:cd03250 86 ILFGK------------PFDEERYEKVIKACALEPdLEILpdgdlteigekginlSGGQKQRISLARAVYSDADIYLLDD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 167 PTNGLDPDIALTV-RTLIRSLAEDGAAVLLTSHLLGEIEDlAHTITVLGAGS 217
Cdd:cd03250 154 PLSAVDAHVGRHIfENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
23-235 |
1.23e-04 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 43.47 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRA-RRHVGLAlggdsgfyprasaRD 101
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASlRNQVALV-------------SQ 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 NLLFFAD-VA-----GVSGRSRRREVDHAlARVeltdAAARPFQE----------------FSRGMKQRLHIARALLGSP 159
Cdd:PRK11176 425 NVHLFNDtIAnniayARTEQYSREQIEEA-ARM----AYAMDFINkmdngldtvigengvlLSGGQRQRIAIARALLRDS 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538311617 160 ALLLLDEPTNGLDPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGIAA 235
Cdd:PRK11176 500 PILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELLAQNGVYA 573
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
24-216 |
1.67e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 42.99 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQmCSTLLTP--TSGTLTVNGINA-IAHPQRARRHvGLALGGDS----GFYPR 96
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQ-CLFGAYPgrWEGEIFIDGKPVkIRNPQQAIAQ-GIAMVPEDrkrdGIVPV 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 97 ASARDNLLFfADVAGVSGRSR---RREVDHALARV-ELTDAAARPFQEFSR---GMKQRLHIARALLGSPALLLLDEPTN 169
Cdd:PRK13549 356 MGVGKNITL-AALDRFTGGSRiddAAELKTILESIqRLKVKTASPELAIARlsgGNQQKAVLAKCLLLNPKILILDEPTR 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK13549 435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
31-188 |
1.94e-04 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 42.40 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 31 ISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARrhvglalggdsgfyPRASARDNLLFFADVA 110
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK--------------ADYEGTVRDLLSSITK 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 111 GVSGRSR-RREVDHALARVELTDaaaRPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTLIRSLAE 188
Cdd:cd03237 88 DFYTHPYfKTEIAKPLQIEQILD---REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
23-172 |
2.05e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 42.52 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 23 AVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG--INAIahpQRARRHVGL-----ALggdsgfYP 95
Cdd:PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGrvVNEL---EPADRDIAMvfqnyAL------YP 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538311617 96 RASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLD 172
Cdd:PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
27-222 |
2.06e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 42.09 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTtvqMCSTL-----LTPTSGTLTVNGIN--AIAHPQRARRHVGLALGgdsgfYPRASA 99
Cdd:PRK09580 20 LNLEVRPGEVHAIMGPNGSGKST---LSATLagredYEVTGGTVEFKGKDllELSPEDRAGEGIFMAFQ-----YPVEIP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSGRSRRRE--------VDHALARVELTDAAARPFQE-----FSRGMKQRLHIARALLGSPALLLLDE 166
Cdd:PRK09580 92 GVSNQFFLQTALNAVRSYRGQepldrfdfQDLMEEKIALLKMPEDLLTRsvnvgFSGGEKKRNDILQMAVLEPELCILDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 167 PTNGLDPDIALTVRTLIRSLAEDGAAVLLTSH---LLGEIE-DLAHtitVLGAGSVAVSG 222
Cdd:PRK09580 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHyqrILDYIKpDYVH---VLYQGRIVKSG 228
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
96-198 |
2.22e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 42.38 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 96 RASARDNLLFFADVAGVSGRSRRREVDHALARVELTDAAARPFQEFSRGMKQ------RLHIARallGSPALLLLDEPTN 169
Cdd:pfam13304 192 LKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRllallaALLSAL---PKGGLLLIDEPES 268
|
90 100
....*....|....*....|....*....
gi 2538311617 170 GLDPDIALTVRTLIRSLAEDGAAVLLTSH 198
Cdd:pfam13304 269 GLHPKLLRRLLELLKELSRNGAQLILTTH 297
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
28-198 |
5.25e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 41.72 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 28 SLRISSGEIHA-----LLGPNGAGKTTTVQMCSTLLTPTSGtlTVNGINAIAH-PQRarrhvglaLGGDSGfyprASARD 101
Cdd:PRK13409 354 SLEVEGGEIYEgevigIVGPNGIGKTTFAKLLAGVLKPDEG--EVDPELKISYkPQY--------IKPDYD----GTVED 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 102 nllFFADVAGVSGRSR-RREVDHALARVELTDaaaRPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVR 180
Cdd:PRK13409 420 ---LLRSITDDLGSSYyKSEIIKPLQLERLLD---KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493
|
170
....*....|....*....
gi 2538311617 181 TLIRSLAED-GAAVLLTSH 198
Cdd:PRK13409 494 KAIRRIAEErEATALVVDH 512
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-65 |
6.43e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 41.31 E-value: 6.43e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2538311617 28 SLRISSGEIH-----ALLGPNGAGKTTTVQMCSTLLTPTSGTL 65
Cdd:COG1245 355 SLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEGEV 397
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
24-198 |
6.66e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 39.83 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTltvnginaiahpqrarrhVGLALGGDSGFYPRASArdnl 103
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR------------------IGMPEGEDLLFLPQRPY---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 104 lffadvagvsgrsrrrevdhaLARVELTDAAARP-FQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:cd03223 75 ---------------------LPLGTLREQLIYPwDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
|
170
....*....|....*.
gi 2538311617 183 IRslaEDGAAVLLTSH 198
Cdd:cd03223 134 LK---ELGITVISVGH 146
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
27-229 |
6.90e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 41.69 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTltVNGINAIAH-PQRArrhvglalggdsgFYPRASARDNLLF 105
Cdd:PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR--VWAERSIAYvPQQA-------------WIMNATVRGNILF 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 F-----ADVAGVSgRSRRREVDHALARVELTDAAARPFQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIA-LTV 179
Cdd:PTZ00243 744 FdeedaARLADAV-RVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGeRVV 822
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2538311617 180 RTLIRSLAEDGAAVLLTSHLlgEIEDLAHTITVLGAGSVAVSGSLEDIAA 229
Cdd:PTZ00243 823 EECFLGALAGKTRVLATHQV--HVVPRADYVVALGDGRVEFSGSSADFMR 870
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
24-216 |
7.36e-04 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 41.14 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG------------INAIAHPQRARRHVGLALGgds 91
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGhevvtrspqdglANGIVYISEDRKRDGLVLG--- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 92 gfyprASARDN-----LLFFADVAGvsgrsrrrEVDHALARVELTD----------AAARPFQEFSRGMKQRLHIARALL 156
Cdd:PRK10762 345 -----MSVKENmsltaLRYFSRAGG--------SLKHADEQQAVSDfirlfniktpSMEQAIGLLSGGNQQKVAIARGLM 411
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 157 GSPALLLLDEPTNGLDPDIALTVRTLIRSLAEDGAAVLLTSHLLGEIEDLAHTITVLGAG 216
Cdd:PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
24-198 |
1.30e-03 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 40.56 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEihALL--GPNGAGKTTTVQMCSTLLTPTSGTLTV-NGINAIAHPQRArrhvglalggdsgfY-PRASA 99
Cdd:COG4178 379 LEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPQRP--------------YlPLGTL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 100 RDNLLFFADVAGVSgrsrRREVDHALARVELTDAAARPFQE------FSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:COG4178 443 REALLYPATAEAFS----DAELREALEAVGLGHLAERLDEEadwdqvLSLGEQQRLAFARLLLHKPDWLFLDEATSALDE 518
|
170 180
....*....|....*....|....*
gi 2538311617 174 DIALTVRTLIRSLAEDgAAVLLTSH 198
Cdd:COG4178 519 ENEAALYQLLREELPG-TTVISVGH 542
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
27-228 |
1.60e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 40.34 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQ-MCSTLLTPTSGTLTVNGINAIAhPQRArrhvglalggdsgFYPRASARDNLLF 105
Cdd:PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRGSVAYV-PQVS-------------WIFNATVRENILF 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 106 FADVagvsgRSRR--REVDHALARVELTDAAARPFQEF-------SRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIA 176
Cdd:PLN03232 702 GSDF-----ESERywRAIDVTALQHDLDLLPGRDLTEIgergvniSGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2538311617 177 LTV-RTLIRSLAEDGAAVLLTS--HLLGEIEdlahTITVLGAGSVAVSGSLEDIA 228
Cdd:PLN03232 777 HQVfDSCMKDELKGKTRVLVTNqlHFLPLMD----RIILVSEGMIKEEGTFAELS 827
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
25-62 |
1.65e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 36.42 E-value: 1.65e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2538311617 25 DRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTS 62
Cdd:pfam13555 13 DGHTIPIDPRGNTLLTGPSGSGKSTLLDAIQTLLVPAK 50
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
14-82 |
1.81e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 39.96 E-value: 1.81e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538311617 14 FGTGERAFtAVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRH 82
Cdd:PRK10522 330 FAYQDNGF-SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
27-259 |
1.93e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 39.96 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIAHPQRARRHVgLALGGDSGFYPRASARDNLLFF 106
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV-LSIIPQSPVLFSGTVRFNIDPF 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 107 advagvsgrSRRREVD--HALARVELTDAAAR-PF----------QEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDP 173
Cdd:PLN03232 1334 ---------SEHNDADlwEALERAHIKDVIDRnPFgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 174 DIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDlAHTITVLGAGSVAVSGSLEDIAAHAGIAATTVVQveATATEGLDTLR 253
Cdd:PLN03232 1405 RTDSLIQRTIREEFKS-CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVH--STGPANAQYLS 1480
|
....*.
gi 2538311617 254 GFLGER 259
Cdd:PLN03232 1481 NLVFER 1486
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
27-233 |
2.52e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 39.93 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 27 VSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINaIA----HPQRARRHVglaLGGDSGFYpRASARDN 102
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN-IAkiglHDLRFKITI---IPQDPVLF-SGSLRMN 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 103 LLFFadvagvsGRSRRREVDHALARVELTD-AAARPF----------QEFSRGMKQRLHIARALLGSPALLLLDEPTNGL 171
Cdd:TIGR00957 1380 LDPF-------SQYSDEEVWWALELAHLKTfVSALPDkldhecaeggENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2538311617 172 DPDIALTVRTLIRSLAEDgAAVLLTSHLLGEIEDLAHTItVLGAGSVAVSGSLEDIAAHAGI 233
Cdd:TIGR00957 1453 DLETDNLIQSTIRTQFED-CTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQQRGI 1512
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
17-69 |
5.08e-03 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 38.63 E-value: 5.08e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2538311617 17 GERAFTaVDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNG 69
Cdd:COG4615 342 GDEGFT-LGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDG 393
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
24-174 |
7.56e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 37.84 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 24 VDRVSLRISSGEIHALLGPNGAGKTTTVQMCSTLLTPTSGTLTVNGINAIA-----HPQRARRHVGLALGGDSGF----- 93
Cdd:PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAwvnqeTPALPQPALEYVIDGDREYrqlea 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 94 -YPRASARDNLLFFADVAGV-------SGRSRRREVDHALARVEltDAAARPFQEFSRGMKQRLHIARALLGSPALLLLD 165
Cdd:PRK10636 97 qLHDANERNDGHAIATIHGKldaidawTIRSRAASLLHGLGFSN--EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174
|
....*....
gi 2538311617 166 EPTNGLDPD 174
Cdd:PRK10636 175 EPTNHLDLD 183
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
34-198 |
7.57e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 38.29 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 34 GEIHALLGPNGAGKTTtvqMCSTLLTPTSGTLTVNGINAIAHPQRAR---RHVGLALGGDSgFYPRASARDNLLFFADV- 109
Cdd:PLN03140 906 GVLTALMGVSGAGKTT---LMDVLAGRKTGGYIEGDIRISGFPKKQEtfaRISGYCEQNDI-HSPQVTVRESLIYSAFLr 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 110 --AGVSGRSRRREVDHALARVE---LTDA-AARP-FQEFSRGMKQRLHIARALLGSPALLLLDEPTNGLDPDIALTVRTL 182
Cdd:PLN03140 982 lpKEVSKEEKMMFVDEVMELVEldnLKDAiVGLPgVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1061
|
170
....*....|....*.
gi 2538311617 183 IRSLAEDGAAVLLTSH 198
Cdd:PLN03140 1062 VRNTVDTGRTVVCTIH 1077
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
31-213 |
9.74e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 36.18 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 31 ISSGEIHALLGPNGAGKTTTVqmcstlltptsgtltvnginaiahpqrarRHVGLALGGdsgfyprASARDNLLFFADVA 110
Cdd:cd03227 18 FGEGSLTIITGPNGSGKSTIL-----------------------------DAIGLALGG-------AQSATRRRSGVKAG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538311617 111 GVSGRSrrrEVDHALARVELtdaaarpfqefSRGMKQRLHIARALLGSPALLLL----DEPTNGLDPDIALTVRTLIRSL 186
Cdd:cd03227 62 CIVAAV---SAELIFTRLQL-----------SGGEKELSALALILALASLKPRPlyilDEIDRGLDPRDGQALAEAILEH 127
|
170 180
....*....|....*....|....*..
gi 2538311617 187 AEDGAAVLLTSHLLGEIEDLAHTITVL 213
Cdd:cd03227 128 LVKGAQVIVITHLPELAELADKLIHIK 154
|
|
| |
