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Conserved domains on  [gi|2498269057|ref|WP_280753539|]
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MULTISPECIES: nucleotidyltransferase-like protein [unclassified Paenibacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NTF-like super family cl20560
Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this ...
 1-123 9.86e-21

Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this N-terminal domain resembles a nucleotidyltransferase fold.


The actual alignment was detected with superfamily member pfam14540:

Pssm-ID: 434028  Cd Length: 118  Bit Score: 85.35  E-value: 9.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498269057   1 MELSNVTLLSGETFDENVLGAVVLRQNGDipfQSALLQDFDMVVLVLHEEQDREHIVRHTIAGDQRTQSVHIGLFALEQA 80
Cdd:pfam14540   1 MEDLLRPIYQERASDPNTLGIIAIEKRSK---RSPLTDGFDVVLLVIVKESEEPWFVKHYEVGGKKAALHVVSESQLHEW 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2498269057  81 VMAGDNNELLISLMRGEVIWDPKGILEEMRREILQFegPIKER 123
Cdd:pfam14540  78 ILLGTNRRIIDWLLNGKILFDRNEYLENLRERLLEF--PEPER 118
HTH_52 super family cl39895
Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.
 229-275 5.38e-03

Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.


The actual alignment was detected with superfamily member pfam18576:

Pssm-ID: 436590  Cd Length: 64  Bit Score: 34.76  E-value: 5.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2498269057 229 LFNILNSRKEAWSIKELLQHSGLSQLESELPLVLRKLVSRSLIREIT 275
Cdd:pfam18576   3 LLEVMKEKEEPWTIQELMEHPELEDYSVDLEVLLEYLVEKGIIEVVK 49
 
Name Accession Description Interval E-value
NTF-like pfam14540
Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this ...
 1-123 9.86e-21

Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this N-terminal domain resembles a nucleotidyltransferase fold.


Pssm-ID: 434028  Cd Length: 118  Bit Score: 85.35  E-value: 9.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498269057   1 MELSNVTLLSGETFDENVLGAVVLRQNGDipfQSALLQDFDMVVLVLHEEQDREHIVRHTIAGDQRTQSVHIGLFALEQA 80
Cdd:pfam14540   1 MEDLLRPIYQERASDPNTLGIIAIEKRSK---RSPLTDGFDVVLLVIVKESEEPWFVKHYEVGGKKAALHVVSESQLHEW 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2498269057  81 VMAGDNNELLISLMRGEVIWDPKGILEEMRREILQFegPIKER 123
Cdd:pfam14540  78 ILLGTNRRIIDWLLNGKILFDRNEYLENLRERLLEF--PEPER 118
HTH_52 pfam18576
Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.
 229-275 5.38e-03

Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.


Pssm-ID: 436590  Cd Length: 64  Bit Score: 34.76  E-value: 5.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2498269057 229 LFNILNSRKEAWSIKELLQHSGLSQLESELPLVLRKLVSRSLIREIT 275
Cdd:pfam18576   3 LLEVMKEKEEPWTIQELMEHPELEDYSVDLEVLLEYLVEKGIIEVVK 49
 
Name Accession Description Interval E-value
NTF-like pfam14540
Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this ...
 1-123 9.86e-21

Nucleotidyltransferase-like; Structural comparisons with PDB:1kny indicate that this N-terminal domain resembles a nucleotidyltransferase fold.


Pssm-ID: 434028  Cd Length: 118  Bit Score: 85.35  E-value: 9.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498269057   1 MELSNVTLLSGETFDENVLGAVVLRQNGDipfQSALLQDFDMVVLVLHEEQDREHIVRHTIAGDQRTQSVHIGLFALEQA 80
Cdd:pfam14540   1 MEDLLRPIYQERASDPNTLGIIAIEKRSK---RSPLTDGFDVVLLVIVKESEEPWFVKHYEVGGKKAALHVVSESQLHEW 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2498269057  81 VMAGDNNELLISLMRGEVIWDPKGILEEMRREILQFegPIKER 123
Cdd:pfam14540  78 ILLGTNRRIIDWLLNGKILFDRNEYLENLRERLLEF--PEPER 118
HTH_52 pfam18576
Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.
 229-275 5.38e-03

Helix-turn-helix domain; This is a helix turn helix domain found in bacilli.


Pssm-ID: 436590  Cd Length: 64  Bit Score: 34.76  E-value: 5.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2498269057 229 LFNILNSRKEAWSIKELLQHSGLSQLESELPLVLRKLVSRSLIREIT 275
Cdd:pfam18576   3 LLEVMKEKEEPWTIQELMEHPELEDYSVDLEVLLEYLVEKGIIEVVK 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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