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Standard Results
Full Results
flagellar biosynthesis protein FlhA [Salmonella sp. SA14318]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10012637 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1097.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 2 ANL V AMLRLP S NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T LDF A AFPT I LL F T 81
Cdd:PRK06012 1 ANL A AMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P LDF S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVFIILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVFIILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G S AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M VGQLF S NP RVMLL AA A VL G LLG M VPGMP N L V FLL FTAA L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I VGQLF A NP KALYI AA G VL F LLG L VPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 322 G LA WW LR G RE E KA P E EPQPVKMP E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQ DM GF 400
Cdd:PRK06012 321 F LA YR LR K RE K KA A E LAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQ EL GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE I GSG DAY PGR W LA I NPG TAA G T LPG EK T VD PAFGL D A I WI ES AL K EQAQ IQ G F T 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL G Y T 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 481 VV EA STVVATHL NHL I GQFS AEL F GRQE A QQLLDR VSQ E M PKL T E D LVP G V VT L T TL H KVLQNLL A E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KNHA AEL L GRQE V QQLLDR LAK E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 561 LA EH AP LQS DP H ELT AV VR VA LGR A I T QQ WFPGNE E VQ VI G LD TA LE R LLLQ A LQG G GG ----- LEPGLA A RLL AQT QEA 635
Cdd:PRK06012 561 LA DY AP ITK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2496540373 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1097.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 2 ANL V AMLRLP S NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T LDF A AFPT I LL F T 81
Cdd:PRK06012 1 ANL A AMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P LDF S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVFIILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVFIILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G S AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M VGQLF S NP RVMLL AA A VL G LLG M VPGMP N L V FLL FTAA L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I VGQLF A NP KALYI AA G VL F LLG L VPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 322 G LA WW LR G RE E KA P E EPQPVKMP E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQ DM GF 400
Cdd:PRK06012 321 F LA YR LR K RE K KA A E LAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQ EL GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE I GSG DAY PGR W LA I NPG TAA G T LPG EK T VD PAFGL D A I WI ES AL K EQAQ IQ G F T 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL G Y T 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 481 VV EA STVVATHL NHL I GQFS AEL F GRQE A QQLLDR VSQ E M PKL T E D LVP G V VT L T TL H KVLQNLL A E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KNHA AEL L GRQE V QQLLDR LAK E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 561 LA EH AP LQS DP H ELT AV VR VA LGR A I T QQ WFPGNE E VQ VI G LD TA LE R LLLQ A LQG G GG ----- LEPGLA A RLL AQT QEA 635
Cdd:PRK06012 561 LA DY AP ITK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2496540373 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
22-690
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1043.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 22 LA G P ILILL IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T LDF AA FPT I LL F TTL L RL A LNVASTR I IL M EGH 101
Cdd:COG1298 1 LA V P LGVIA IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P LDF SV FPT L LL I TTL F RL S LNVASTR L IL L EGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 102 T G AA AAGKV V EAFG H F L VGGN FAI G I VVF I ILVIINF M VITKGAGRIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA 181
Cdd:COG1298 81 E G TD AAGKV I EAFG E F V VGGN YVV G L VVF L ILVIINF V VITKGAGRIAEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 182 KK RR S E VTQ EADFYG S MDGASKFVRGDAIAGILI MV IN VV GGL LV GVLQHGMS M G S AA ES YTLLTIGDGLV A QIPAL V IS 261
Cdd:COG1298 161 RR RR E E IQR EADFYG A MDGASKFVRGDAIAGILI TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 262 TAAG V IVTR VSTDQ D V GEQ MV GQLF S NP RVMLL AA A VLGLLG MV PGMP N L V FLL FT A A L L GLA WW L RG R EEKAPE E PQPV 341
Cdd:COG1298 241 TAAG I IVTR AGSEG D L GEQ LS GQLF A NP KALYI AA G VLGLLG LI PGMP H L P FLL LA A L L G GLA YR L KK R QKEEEA E EAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 342 KMPEN -- NSVV E ATWN D VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF AQ DM GF LP P V V H IRDN MD L Q P AR YR 419
Cdd:COG1298 321 AAEAE aa AEPA E ESVD D LLPV D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL AQ EL GF VV P P V R IRDN LQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 420 I LM KGVE IGS G DAY P G R W LAINPG TAA G T LPG EK T VD PAFGL D A I WI ESALK E Q A QIQ G F TVV EA STV V ATHL NHL I GQF 499
Cdd:COG1298 401 I KI KGVE VAR G ELR P D R L LAINPG GVT G E LPG IP T KE PAFGL P A V WI DPEQR E E A ELL G Y TVV DP STV I ATHL SEV I KRH 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 500 S AEL F GRQE A QQLLDR VSQ E M PKL T E D LVP GVVT L TT L H KVLQNLL A E K V P IRD M RTILETLA EH AP LQS DP HE LT AV VR 579
Cdd:COG1298 481 A AEL L GRQE V QQLLDR LKK E Y PKL V E E LVP KLLS L GE L Q KVLQNLL R E R V S IRD L RTILETLA DY AP RTK DP DL LT EH VR 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 580 V ALGR A I T QQ WFPGNE E VQ VI G LD TA LE R LLL QA LQ GGG ----- G L E PGLA A RLL AQTQ EA LSRQ E ML G A PPVLLV NHA L 654
Cdd:COG1298 561 Q ALGR Q I V QQ YAGPDG E LP VI T LD PE LE Q LLL ES LQ QTE qgsyl A L D PGLA Q RLL QSLA EA VEKL E AQ G E PPVLLV SPQ L 640
650 660 670
....*....|....*....|....*....|....*.
gi 2496540373 655 RP L L S R F L R R S LP Q L V VLS NL E LSDNRH I RMTA T I G 690
Cdd:COG1298 641 RP Y L R R L L E R F LP D L P VLS YN E IPPDVE I ESVG T V G 676
FHIPEP
pfam00771 FHIPEP family;
31-680
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 944.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 31 IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T LDF AA FPT I LL F TTL L RLALNVASTR I IL ME GH T gaa AAGKV 110
Cdd:pfam00771 1 IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P LDF SV FPT L LL I TTL F RLALNVASTR L IL LH GH E --- AAGKV 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 111 V EAFG H F L VGGN FAI G I VVF I ILVI IN F M VITKGA G R I AEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA KK RR S E VTQ 190
Cdd:pfam00771 78 I EAFG Q F V VGGN YVV G L VVF L ILVI VQ F I VITKGA E R V AEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA RR RR E E LQR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 191 EADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GVLQHGMS M G S AA ES YTLLTIGDGLV A QIPAL V ISTAAG V IVTR 270
Cdd:pfam00771 158 EADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L ISTAAG I IVTR 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 271 V STDQDV GE QM VGQLF S NP RVMLL AA A VL G LLG MV PG M P N L V FLL FT A A L LG LA WW LR G R EE KA PE E PQPVKMPENNS V V 350
Cdd:pfam00771 238 V ASEGNL GE EI VGQLF A NP KALYI AA G VL L LLG LI PG L P T L P FLL LA A L L GF LA YR LR R R KK KA AA E EAEAEEAAAAA V L 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 351 EA twndvqle D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF A QDM GF LP P VVH IRDN MD L Q P AR YRI LM KGVE IGS G 430
Cdd:pfam00771 318 PV -------- D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL A LEL GF VV P PIR IRDN LQ L K P NE YRI KI KGVE VAR G 389
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 431 DAY P GRW LA I NPG TAA G TL PG EK T VD PAFGL D A I WI ESALK E Q A QIQ G F TVV EAS TV V ATHL NHL I GQFS AEL F GRQE A Q 510
Cdd:pfam00771 390 ELL P DHL LA M NPG GVL G EI PG IP T KE PAFGL P A V WI DEEQR E E A ELA G Y TVV DPP TV I ATHL TEV I KRHA AEL L GRQE V Q 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 511 Q LLD RVSQ E M PKL T E D LVP GVVT L TTLH KVLQNLL A E K V P IRD M RTILETLA EH AP LQS DP HE LT AV VR V ALGR A I T QQ W 590
Cdd:pfam00771 470 A LLD NLKK E Y PKL V E E LVP KLLS L GEIQ KVLQNLL R E R V S IRD L RTILETLA DY AP KTK DP DL LT EY VR Q ALGR Q I C QQ Y 549
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 591 FPGNEEVQ VI G LD TA LE R LL LQA LQ GGG G ------ L E P G LA A RLL AQTQ EA LSRQ E ML G A PPVLL VNHAL R PL L S R F L R R 664
Cdd:pfam00771 550 AGEDGTLP VI T LD PE LE Q LL RES LQ QSE G qgsyla L D P D LA Q RLL EALS EA VEKL E QQ G E PPVLL TSPDI R RY L R R L L E R 629
650
....*....|....*.
gi 2496540373 665 S LP Q L V VLS NL E LSDN 680
Cdd:pfam00771 630 F LP D L P VLS YN E IPPD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
19-689
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 929.36
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 19 WQI L AGP I LILL IL SM M V LPLPAF I LD L L FTF NIALS IMV LLV AM F T Q RT LDF AA FPT I LL FT TL L RL A LNVASTR I IL M 98
Cdd:TIGR01398 1 GRD L LLA I GVVA IL AV M I LPLPAF L LD I L LAL NIALS LLI LLV TL F I Q KP LDF SS FPT L LL IA TL F RL S LNVASTR L IL T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 99 E GH T G AA AAGKV V EAFG H F L VGGN FA IG IV VFIIL V I I NF M VITKGA G RIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E 178
Cdd:TIGR01398 81 H GH E G PN AAGKV I EAFG Q F V VGGN YV IG LI VFIIL I I V NF I VITKGA T RIAEV A ARF T LD A MPGKQMAIDADLNAGLI T E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 179 D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GV L QHGMS MGS AA ES YT L LTIGDGLVAQIPAL 258
Cdd:TIGR01398 161 E EAKKRR E E LE QEADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GV V QHGMS LSD AA ST YT I LTIGDGLVAQIPAL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 259 V ISTA A G V IVTR V S TDQDV G EQM V G QL FS NPR VM L LA AAVLGLL GM VPG M P NLV FL LFTA AL LG LAW W LR G R EEKAP E EP 338
Cdd:TIGR01398 241 I ISTA T G L IVTR A S SEGSF G KAI V T QL GA NPR AL L IV AAVLGLL AL VPG L P TFP FL FLAG AL AF LAW Y LR R R SKQEE E AA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 339 Q -- PVKMP E NNSVV E ATW ND VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RIRSIRK KF AQ DM GF LP PV VH IRDN MD L Q P A 416
Cdd:TIGR01398 321 A ea AKAQE E AAEEE E ESI ND ILAL D D L EL E L GY G LIP L VD DS Q G G D LL D RIRSIRK QL AQ EY GF VM PV IR IRDN LR L P P N 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 417 R YRI LM KGVE IGS G DAY PG RW LA I NPG T A A G TL PGE K T VD PAFGL D A I WI ESAL KE Q A QIQ G F TVV EAS TV V ATHL NHL I 496
Cdd:TIGR01398 401 E YRI KI KGVE VAR G ELR PG KY LA M NPG N A D G EI PGE E T RE PAFGL P A Y WI SEKN KE E A ERL G Y TVV DPA TV L ATHL SEV I 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 497 GQFS AEL FG RQE A Q Q LLDR VSQ E M PKL T E D L V P GV V T L T T LH KVLQ N LL A E K V P IR DMR TILETLA EH AP LQS DP HE L TA 576
Cdd:TIGR01398 481 KNNA AEL LT RQE V Q N LLDR LKE E Y PKL V E E L I P DK V P L G T IQ KVLQ L LL R E R V S IR NLP TILETLA DY AP ITK DP DL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 577 V VR VA LGR A ITQQ WFPGNEEVQ VI G LD TA LE RL L LQ AL QGG G ----- G LEP G L AAR L LAQTQE A LSRQEML G AP PVLL VN 651
Cdd:TIGR01398 561 H VR QR LGR Q ITQQ YLDEDGVLP VI T LD PD LE AA L AE AL KRD G egell D LEP A L LEE L VRAVRK A VEKLANN G ER PVLL TS 640
650 660 670
....*....|....*....|....*....|....*...
gi 2496540373 652 HAL RP LLS R F L R R SL P Q L V VLS NL E LS DN RHIRMTATI 689
Cdd:TIGR01398 641 PRV RP YVR R I L E R FF P E L P VLS YN E IP DN VRVETVGVV 678
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1097.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 2 ANL V AMLRLP S NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T LDF A AFPT I LL F T 81
Cdd:PRK06012 1 ANL A AMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P LDF S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVFIILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVFIILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G S AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M VGQLF S NP RVMLL AA A VL G LLG M VPGMP N L V FLL FTAA L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I VGQLF A NP KALYI AA G VL F LLG L VPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 322 G LA WW LR G RE E KA P E EPQPVKMP E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQ DM GF 400
Cdd:PRK06012 321 F LA YR LR K RE K KA A E LAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQ EL GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE I GSG DAY PGR W LA I NPG TAA G T LPG EK T VD PAFGL D A I WI ES AL K EQAQ IQ G F T 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL G Y T 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 481 VV EA STVVATHL NHL I GQFS AEL F GRQE A QQLLDR VSQ E M PKL T E D LVP G V VT L T TL H KVLQNLL A E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KNHA AEL L GRQE V QQLLDR LAK E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 561 LA EH AP LQS DP H ELT AV VR VA LGR A I T QQ WFPGNE E VQ VI G LD TA LE R LLLQ A LQG G GG ----- LEPGLA A RLL AQT QEA 635
Cdd:PRK06012 561 LA DY AP ITK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2496540373 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
22-690
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1043.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 22 LA G P ILILL IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T LDF AA FPT I LL F TTL L RL A LNVASTR I IL M EGH 101
Cdd:COG1298 1 LA V P LGVIA IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P LDF SV FPT L LL I TTL F RL S LNVASTR L IL L EGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 102 T G AA AAGKV V EAFG H F L VGGN FAI G I VVF I ILVIINF M VITKGAGRIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA 181
Cdd:COG1298 81 E G TD AAGKV I EAFG E F V VGGN YVV G L VVF L ILVIINF V VITKGAGRIAEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 182 KK RR S E VTQ EADFYG S MDGASKFVRGDAIAGILI MV IN VV GGL LV GVLQHGMS M G S AA ES YTLLTIGDGLV A QIPAL V IS 261
Cdd:COG1298 161 RR RR E E IQR EADFYG A MDGASKFVRGDAIAGILI TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 262 TAAG V IVTR VSTDQ D V GEQ MV GQLF S NP RVMLL AA A VLGLLG MV PGMP N L V FLL FT A A L L GLA WW L RG R EEKAPE E PQPV 341
Cdd:COG1298 241 TAAG I IVTR AGSEG D L GEQ LS GQLF A NP KALYI AA G VLGLLG LI PGMP H L P FLL LA A L L G GLA YR L KK R QKEEEA E EAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 342 KMPEN -- NSVV E ATWN D VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF AQ DM GF LP P V V H IRDN MD L Q P AR YR 419
Cdd:COG1298 321 AAEAE aa AEPA E ESVD D LLPV D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL AQ EL GF VV P P V R IRDN LQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 420 I LM KGVE IGS G DAY P G R W LAINPG TAA G T LPG EK T VD PAFGL D A I WI ESALK E Q A QIQ G F TVV EA STV V ATHL NHL I GQF 499
Cdd:COG1298 401 I KI KGVE VAR G ELR P D R L LAINPG GVT G E LPG IP T KE PAFGL P A V WI DPEQR E E A ELL G Y TVV DP STV I ATHL SEV I KRH 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 500 S AEL F GRQE A QQLLDR VSQ E M PKL T E D LVP GVVT L TT L H KVLQNLL A E K V P IRD M RTILETLA EH AP LQS DP HE LT AV VR 579
Cdd:COG1298 481 A AEL L GRQE V QQLLDR LKK E Y PKL V E E LVP KLLS L GE L Q KVLQNLL R E R V S IRD L RTILETLA DY AP RTK DP DL LT EH VR 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 580 V ALGR A I T QQ WFPGNE E VQ VI G LD TA LE R LLL QA LQ GGG ----- G L E PGLA A RLL AQTQ EA LSRQ E ML G A PPVLLV NHA L 654
Cdd:COG1298 561 Q ALGR Q I V QQ YAGPDG E LP VI T LD PE LE Q LLL ES LQ QTE qgsyl A L D PGLA Q RLL QSLA EA VEKL E AQ G E PPVLLV SPQ L 640
650 660 670
....*....|....*....|....*....|....*.
gi 2496540373 655 RP L L S R F L R R S LP Q L V VLS NL E LSDNRH I RMTA T I G 690
Cdd:COG1298 641 RP Y L R R L L E R F LP D L P VLS YN E IPPDVE I ESVG T V G 676
FHIPEP
pfam00771 FHIPEP family;
31-680
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 944.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 31 IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T LDF AA FPT I LL F TTL L RLALNVASTR I IL ME GH T gaa AAGKV 110
Cdd:pfam00771 1 IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P LDF SV FPT L LL I TTL F RLALNVASTR L IL LH GH E --- AAGKV 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 111 V EAFG H F L VGGN FAI G I VVF I ILVI IN F M VITKGA G R I AEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA KK RR S E VTQ 190
Cdd:pfam00771 78 I EAFG Q F V VGGN YVV G L VVF L ILVI VQ F I VITKGA E R V AEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA RR RR E E LQR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 191 EADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GVLQHGMS M G S AA ES YTLLTIGDGLV A QIPAL V ISTAAG V IVTR 270
Cdd:pfam00771 158 EADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L ISTAAG I IVTR 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 271 V STDQDV GE QM VGQLF S NP RVMLL AA A VL G LLG MV PG M P N L V FLL FT A A L LG LA WW LR G R EE KA PE E PQPVKMPENNS V V 350
Cdd:pfam00771 238 V ASEGNL GE EI VGQLF A NP KALYI AA G VL L LLG LI PG L P T L P FLL LA A L L GF LA YR LR R R KK KA AA E EAEAEEAAAAA V L 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 351 EA twndvqle D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF A QDM GF LP P VVH IRDN MD L Q P AR YRI LM KGVE IGS G 430
Cdd:pfam00771 318 PV -------- D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL A LEL GF VV P PIR IRDN LQ L K P NE YRI KI KGVE VAR G 389
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 431 DAY P GRW LA I NPG TAA G TL PG EK T VD PAFGL D A I WI ESALK E Q A QIQ G F TVV EAS TV V ATHL NHL I GQFS AEL F GRQE A Q 510
Cdd:pfam00771 390 ELL P DHL LA M NPG GVL G EI PG IP T KE PAFGL P A V WI DEEQR E E A ELA G Y TVV DPP TV I ATHL TEV I KRHA AEL L GRQE V Q 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 511 Q LLD RVSQ E M PKL T E D LVP GVVT L TTLH KVLQNLL A E K V P IRD M RTILETLA EH AP LQS DP HE LT AV VR V ALGR A I T QQ W 590
Cdd:pfam00771 470 A LLD NLKK E Y PKL V E E LVP KLLS L GEIQ KVLQNLL R E R V S IRD L RTILETLA DY AP KTK DP DL LT EY VR Q ALGR Q I C QQ Y 549
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 591 FPGNEEVQ VI G LD TA LE R LL LQA LQ GGG G ------ L E P G LA A RLL AQTQ EA LSRQ E ML G A PPVLL VNHAL R PL L S R F L R R 664
Cdd:pfam00771 550 AGEDGTLP VI T LD PE LE Q LL RES LQ QSE G qgsyla L D P D LA Q RLL EALS EA VEKL E QQ G E PPVLL TSPDI R RY L R R L L E R 629
650
....*....|....*.
gi 2496540373 665 S LP Q L V VLS NL E LSDN 680
Cdd:pfam00771 630 F LP D L P VLS YN E IPPD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
19-689
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 929.36
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 19 WQI L AGP I LILL IL SM M V LPLPAF I LD L L FTF NIALS IMV LLV AM F T Q RT LDF AA FPT I LL FT TL L RL A LNVASTR I IL M 98
Cdd:TIGR01398 1 GRD L LLA I GVVA IL AV M I LPLPAF L LD I L LAL NIALS LLI LLV TL F I Q KP LDF SS FPT L LL IA TL F RL S LNVASTR L IL T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 99 E GH T G AA AAGKV V EAFG H F L VGGN FA IG IV VFIIL V I I NF M VITKGA G RIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E 178
Cdd:TIGR01398 81 H GH E G PN AAGKV I EAFG Q F V VGGN YV IG LI VFIIL I I V NF I VITKGA T RIAEV A ARF T LD A MPGKQMAIDADLNAGLI T E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 179 D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GV L QHGMS MGS AA ES YT L LTIGDGLVAQIPAL 258
Cdd:TIGR01398 161 E EAKKRR E E LE QEADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GV V QHGMS LSD AA ST YT I LTIGDGLVAQIPAL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 259 V ISTA A G V IVTR V S TDQDV G EQM V G QL FS NPR VM L LA AAVLGLL GM VPG M P NLV FL LFTA AL LG LAW W LR G R EEKAP E EP 338
Cdd:TIGR01398 241 I ISTA T G L IVTR A S SEGSF G KAI V T QL GA NPR AL L IV AAVLGLL AL VPG L P TFP FL FLAG AL AF LAW Y LR R R SKQEE E AA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 339 Q -- PVKMP E NNSVV E ATW ND VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RIRSIRK KF AQ DM GF LP PV VH IRDN MD L Q P A 416
Cdd:TIGR01398 321 A ea AKAQE E AAEEE E ESI ND ILAL D D L EL E L GY G LIP L VD DS Q G G D LL D RIRSIRK QL AQ EY GF VM PV IR IRDN LR L P P N 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 417 R YRI LM KGVE IGS G DAY PG RW LA I NPG T A A G TL PGE K T VD PAFGL D A I WI ESAL KE Q A QIQ G F TVV EAS TV V ATHL NHL I 496
Cdd:TIGR01398 401 E YRI KI KGVE VAR G ELR PG KY LA M NPG N A D G EI PGE E T RE PAFGL P A Y WI SEKN KE E A ERL G Y TVV DPA TV L ATHL SEV I 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 497 GQFS AEL FG RQE A Q Q LLDR VSQ E M PKL T E D L V P GV V T L T T LH KVLQ N LL A E K V P IR DMR TILETLA EH AP LQS DP HE L TA 576
Cdd:TIGR01398 481 KNNA AEL LT RQE V Q N LLDR LKE E Y PKL V E E L I P DK V P L G T IQ KVLQ L LL R E R V S IR NLP TILETLA DY AP ITK DP DL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 577 V VR VA LGR A ITQQ WFPGNEEVQ VI G LD TA LE RL L LQ AL QGG G ----- G LEP G L AAR L LAQTQE A LSRQEML G AP PVLL VN 651
Cdd:TIGR01398 561 H VR QR LGR Q ITQQ YLDEDGVLP VI T LD PD LE AA L AE AL KRD G egell D LEP A L LEE L VRAVRK A VEKLANN G ER PVLL TS 640
650 660 670
....*....|....*....|....*....|....*...
gi 2496540373 652 HAL RP LLS R F L R R SL P Q L V VLS NL E LS DN RHIRMTATI 689
Cdd:TIGR01398 641 PRV RP YVR R I L E R FF P E L P VLS YN E IP DN VRVETVGVV 678
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
22-689
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 570.97
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 22 L AGPI L ILL I LS MM V LPLP AFIL D L L FTF NI AL S IMV L L VAM FTQRT L D F AA FP TI LL F TTL L RLAL NVAS TR I IL ME gh 101
Cdd:COG4789 11 L VLAA L LVA I IF MM I LPLP TYLV D I L IAL NI TI S VLL L M VAM YIPSP L A F ST FP SV LL I TTL F RLAL SIST TR L IL LQ -- 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 102 tga A A AG KVV E A FG H F L VGGN FAI G I V V F I I LVIIN F M VITKG AG R I AEV G ARF V LD G MPGKQM A IDADL N AG L I GE DEA 181
Cdd:COG4789 89 --- A D AG HII E T FG N F V VGGN LVV G L V I F L I ITVVQ F I VITKG SE R V AEV A ARF S LD A MPGKQM S IDADL R AG V I DA DEA 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 182 KK RR SEVTQ E ADF YG S MDGA S KFV R GDAIAGI L I MVI N VV GG LLV GVLQHGMS MGS A AES Y TL LTIGDGLVAQIPAL V IS 261
Cdd:COG4789 166 RR RR ALLEK E SQL YG A MDGA M KFV K GDAIAGI I I ILV N II GG IAI GVLQHGMS ASE A LHT Y SI LTIGDGLVAQIPAL L IS 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 262 TA AG V IVTRVS T D -- QDV G EQM V G QL FSN P RVM L L AA AV L G L LGMV PG M P N LVFLL FT A A L L GL AWW L RG R EEK A PEEPQ 339
Cdd:COG4789 246 IT AG I IVTRVS G D ed SNL G REI V S QL LAQ P KAL L I AA VL L L L FALI PG F P T LVFLL LA A L L G GL GFK L LR R KRR A AAAAE 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 340 PVKM P ENNSVVEATWNDVQLEDS ------- L GMEVGYR L I P MVDFQQ dge L LGR IR SI R KKFAQ D M G FLP P VV HIR D N MD 412
Cdd:COG4789 326 SEPL P ALQAAGAKGSEAGLIDGD dfpptvp L ILRLSPS L A P ALEAEA --- L NQE IR RL R NRLFE D L G VPL P GI HIR F N PG 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 413 L QPAR Y R IL MKG V EIGS G DAY PG RW L AINPGT -- A A GTL P G E KTVD P AFGLDAI W IESALK E QAQIQ G FT V VE A ST V V A T 490
Cdd:COG4789 403 L PDDE Y S IL LNE V PVAR G TLP PG HL L VRDDVD el E A LGI P A E EGEL P LGEGPSL W VPAEHA E LLEKA G IK V RD A ED V L A L 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 491 HL NHLIGQFS AE LF G R QE AQQ LLD RVSQEM P klte D LV PG V VTLTT L HK --- VLQ N L LA E KVP IR DM R T ILE T L A E HA P L 567
Cdd:COG4789 483 HL SLVLRRHA AE FI G I QE TRY LLD QMEKKY P ---- E LV KE V QRVLP L QR iae VLQ R L VE E GIS IR NL R L ILE A L I E WG P K 558
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 568 QS D PHE LT AV VR V AL G R A I TQQWFP G NEEVQVIG LD TAL E RLLLQ A L - Q GGG G ---- L E P GLAARL L A Q TQE AL SRQEML 642
Cdd:COG4789 559 EK D VVM LT EY VR I AL K R Y I CHRYSG G QGTLPALL LD PEI E EMIRG A I r Q TSA G sfla L D P EQSQAI L E Q LRQ AL GPLPPG 638
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2496540373 643 G AP PVLL VNHAL R PLLSRFLR R SL P Q L V VLS NL EL SDNRHIRMTAT I 689
Cdd:COG4789 639 G QD PVLL TSMDI R RFVRKLIE R EF P D L P VLS YQ EL TPEIRVQPLGR I 685
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
27-689
3.77e-165
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 490.32
E-value: 3.77e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 27 L I L L I L SMM V LPLP AFIL D L L FTF NI AL S IMV L LV A MFTQ R T L DFAA FP TI LL F TTL L RLAL NVAS TR I IL ME ghtga A A 106
Cdd:TIGR01399 10 L L L A I I SMM I LPLP TLLV D I L IAI NI TI S VLL L MI A IYIP R P L ALST FP SV LL I TTL F RLAL SIST TR L IL LH ----- A D 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 107 AG KVV EAFG H F L VGGN F A I G I V V F I I LV I IN F M VITKG AG R I AEV G ARF V LD G MPGKQM A IDADL N AG L I GE DEA KK RRS 186
Cdd:TIGR01399 85 AG NII EAFG Q F V VGGN L A V G L V I F L I IT I VQ F I VITKG SE R V AEV S ARF S LD A MPGKQM S IDADL R AG V I DA DEA RR RRS 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 187 EVTQ E ADF YG S MDGA S KFV R GDAIAGI L I MV IN VV GG LLV GV L QHGMS MGS A AES YT L LTIGDGLV A QIPAL V IS TA AG V 266
Cdd:TIGR01399 165 TLEK E SQL YG A MDGA M KFV K GDAIAGI I I VL IN II GG ISI GV T QHGMS ASE A LHL YT V LTIGDGLV S QIPAL L IS VT AG I 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 267 IVTRV STD -- QDV G EQMVG QL F S N PR VM LLAA AV L GLLGMV PG M P N LVF L L FTAA L LGLAWW L RG R EEKAPEEPQPVKMP 344
Cdd:TIGR01399 245 IVTRV PGE ae RNL G REIGH QL T S Q PR AL LLAA VL L LGFALI PG F P L LVF A L LAVL L AAAGYL L SR R KRSRAKANKAQASG 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 345 ENN S VVE A TWNDVQ L EDSLGME - VGY RL I P - MVDFQQDGE L LGR I RSI R KKFAQ D M G FLP P VVH IR DNMD L QPARY RIL M 422
Cdd:TIGR01399 325 AVA S APG A AAPIKN L DPFAEAC p LIL RL S P d LQSSADKDT L DQE I ERM R WALFE D L G IPL P GII IR VGDS L PDNEF RIL L 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 423 KG V EIGSGDAY PG R w L A I N P G TAA --- GTL P GEKTVDPAFGLDAI W IESALK E QA Q IQ G FTVVEA S T V VATH L NHLIGQF 499
Cdd:TIGR01399 405 YE V PVLRDTIP PG H - V A L N D G VDN iev AGI P AISGKRWPGESQRV W VTEEGA E KL Q GA G LGYFSD S Q V ITHR L KATLLRN 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 500 SA E LF G R QE AQQ LLD RVSQ E M P K L TED l V PG V VT L TTLHK VLQ N L LA E K V P IR DM R T ILETL A E H A PLQS D PHE LT AV VR 579
Cdd:TIGR01399 484 AQ E FI G I QE TRY LLD QMER E Y P E L VKE - V QR V LP L QRIAE VLQ R L VS E Q V S IR NL R L ILETL I E W A QREK D VVM LT EY VR 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 580 V AL G R A I TQQWFP G NEEVQVIGL D TAL E R L LLQ A L - Q GGG G ---- L E P GLAAR LL A Q TQE A LSRQEMLGAP PVLL VNHAL 654
Cdd:TIGR01399 563 I AL K R Y I CHRYAN G GRQLSAVLI D PEI E E L IRG A I r Q TST G tyla L D P DDSEQ LL D Q IRQ A VGDLPRAPSQ PVLL TSMDI 642
650 660 670
....*....|....*....|....*....|....*
gi 2496540373 655 R PLLSRFLRRSL P Q L V VLS NL EL SDNRHIRMTAT I 689
Cdd:TIGR01399 643 R RYVRKMIESEF P D L P VLS YQ EL GEEIEVQVLGR I 677
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
28-689
4.26e-148
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 446.87
E-value: 4.26e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 28 I LL IL SMMV LP L PA FIL D LLFT F N IALS IMV L L VA MFT QR T L D F A AFPT I LL FT TLLRLALN V A S TR I IL ME G HT G AA AA 107
Cdd:PRK12792 24 I VA IL AVLF LP V PA VLI D IGLA F S IALS VLI L M VA LWI QR P L E F S AFPT V LL IA TLLRLALN I A T TR L IL SN G QE G VD AA 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 108 G K V VEA F GH F LVG G N F A IG I VVF I IL VII NF M VITKGA G RIAEVGARF V LD GM PGKQMAIDADL N AGLI GED EA KK RR S E 187
Cdd:PRK12792 104 G H V IAG F SQ F VMS G D F V IG L VVF A IL ITV NF L VITKGA T RIAEVGARF T LD AI PGKQMAIDADL S AGLI DDK EA QR RR R E 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 188 VTQ E AD F Y GSMDGASKFVRGDAIA GIL I MVI N VV GG LLV GV LQ HGM SM G S AA ESY T L L TI GDGLV A QIPAL VI S T AAG VI 267
Cdd:PRK12792 184 LEE E SA F F GSMDGASKFVRGDAIA SLI I IAV N IF GG III GV TR HGM PL G Q AA DVF T K L SV GDGLV S QIPAL IV S L AAG LL 263
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 268 V ---- TR V S TD Q D V geqm V GQL FSN PR VMLL AA AVLGL L GM VPG M P N L V F L L FTAALLGL A WWLRG R EEKAPEEPQPVKM 343
Cdd:PRK12792 264 V skgg TR G S AE Q A V ---- L GQL GAY PR ALSV AA LLMFV L AI VPG L P F L P F A L LGGVMAFV A YTIPR R RAARAAAEAAKVK 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 344 P E NN S VVEATWND V ------- QL E DS LG MEVGYR L IP mvdfq QDG EL LG R IRSI R K KFA QDM GF LP P VVHIR D NMD L Q P A 416
Cdd:PRK12792 340 R E EE S AQAEAKDS V keqlrta EI E LC LG KQLAAQ L QG ----- AHA EL AH R VAKM R R KFA KQY GF VV P EIKLT D SLS L P P K 414
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 417 R Y R I LMK G VEIGSGDAY PG RW L AINPGTAAGTL PGE KTVD PAFG LD A I W IES A LKEQAQIQ GF TV V EAST V VA THL NHL I 496
Cdd:PRK12792 415 T Y Q I KIH G TVVATQELR PG EL L VVVGDGPRPDV PGE EVRE PAFG MK A L W VPD A FANEVRRD GF EP V DNAS V LL THL SEV I 494
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 497 GQFSAE L FGRQEAQQ LLDR VSQ E MPK L TE D LV P GVVTLTT L HK VL QN LLAE K V P IR DMRT ILE TL AE H AP LQSDPHELTA 576
Cdd:PRK12792 495 RNNLPQ L LSYKDMRA LLDR LDP E YKR L ID D IC P SQISYSG L QA VL KL LLAE R V S IR NLHL ILE AV AE I AP HARRAEQIAE 574
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 577 V VR VALGRA I TQQ w FPG N EEVQ V IG L DTALERLLL Q A L QGGG ------- GLE P G L AARLLAQTQ EA LSRQEML G APP VL L 649
Cdd:PRK12792 575 H VR MRIAQQ I CGD - LSD N GVLK V LR L GNRWDLAFH Q S L KRDA kgevvef DID P R L VEQFGTEAS EA IRERMDQ G HQF VL V 653
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2496540373 650 VNHAL RP LLSRFLR R SL P Q L V VLS N LE LSDNRH I RMTA TI 689
Cdd:PRK12792 654 TAPEA RP YVRMIIE R LF P T L P VLS H LE IARGVE I KSLG TI 693
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
27-689
2.84e-136
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 415.93
E-value: 2.84e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 27 L ILL I LS M MVL PLP AFIL D L L FTF NI A L S I M V LLVAMFTQ R T L D F AA FP T ILL F TTL L RLAL NVAST R I IL MEGH tgaaa 106
Cdd:PRK15337 20 L MVM I IA M LII PLP TYLV D F L IGL NI V L A I L V FMGSFYID R I L S F ST FP S ILL I TTL F RLAL SISTS R L IL LDAD ----- 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 107 AG KVVEA FG H F LV G GNFAI G I V V F I I LVIIN F M VITKG AG R I AEV G ARF V LDGMPGKQM A IDADL N AG L I GE D EA K K RRS 186
Cdd:PRK15337 95 AG EIITT FG Q F VI G DSLVV G F V I F S I VTVVQ F I VITKG SE R V AEV A ARF S LDGMPGKQM S IDADL K AG I I DA D GV K E RRS 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 187 EVTQ E ADF YGS M DGA S KF VR GDAIAGI L I MVI N VV GG LL VG VL QHGM SMG SA AES YT L LTIGDGLVAQIPAL V IS TA AG V 266
Cdd:PRK15337 175 VLER E SQL YGS F DGA M KF IK GDAIAGI I I IFV N LI GG IS VG MT QHGM DLS SA LST YT I LTIGDGLVAQIPAL L IS IS AG F 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 267 IVTRV ST D Q D - V G EQMVG QL F SNP R V MLLA A AVLGLL G MV PG M P NL VFLL FTAA L LG L AWWLRG R EE K - APE EP QPVKMP 344
Cdd:PRK15337 255 IVTRV NG D S D n L G RNIMS QL L SNP F V LVVT A ILALSI G LL PG F P LP VFLL LAVV L GV L FYFKKF R KK K k SAA EP DTSGGE 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 345 ENNSV veatwn D VQLED SLG MEVGYRLI ----- P MV ----- DFQQ D G E LLGRIRSI R KK F AQ D M G FLP P VVHI R DNMD L Q 414
Cdd:PRK15337 335 APLDI ------ D EKAGS SLG LIGDLDKV ipetv P LI llvpe ARRP D L E KENLAERL R SQ F FI D Y G VRL P DILL R YSEG L D 408
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 415 PARYRI L MKGVEIGSGDA Y PGRWLAI N PGTAAGT L PGEK T VDPAF G LDAI W IESALK E QAQIQ G FTVVE A stvvath LNH 494
Cdd:PRK15337 409 DNSIVV L INEIRAAQFTI Y FDLHRVV N YSDELVS L GINP T IIDSG G EQYY W VPHEDT E KLAKL G YVLRS A ------- IDE 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 495 L IGQF S A ------- E L FG R QE AQQ LLD RVSQEM P K L TED l V PGVV T LTTLHK VLQ N LL A E KVP IR D M RT I L E T LA EH AP L 567
Cdd:PRK15337 482 L YHCL S V lllhnin E F FG I QE TKH LLD QLEKKY P D L LKE - V YRHA T VQRISE VLQ R LL S E RIS IR N M KL I M E A LA LW AP R 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 568 QS D PHE L TAV VR V AL G R A I TQQ w F PGNE E VQVIG L DTAL E RLLLQAL - Q GG GG ---- L E P GLAAR L LAQTQE AL SRQEML 642
Cdd:PRK15337 561 EK D VIM L VEH VR G AL A R Y I CHK - F AAGG E LRAVV L SAEV E DAIRKGI r Q TS GG tfln L D P AESEN L MDLLTL AL DDLGIA 639
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2496540373 643 GAPP VLLV NHAL R PLLSRFLRRSL P Q L V VLS NL E LS D NRHIRMTA TI 689
Cdd:PRK15337 640 HRDI VLLV SVDI R RFVKKLIEGRF P E L E VLS FG E IA D SVEVNVIK TI 686
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
21-689
4.41e-128
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 394.47
E-value: 4.41e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 21 I LA gp ILI L LILS MM V LPLP AFIL D L L FTF N IAL S IMV L LV A MFTQRT L D F AA FP TI LL F TTL L RLAL NVAST R II L ME g 100
Cdd:PRK12720 18 V LA -- VML L VAVF MM I LPLP TWMV D I L IAI N LMF S VIL L MI A IYLRDP L E F SV FP SL LL I TTL Y RLAL TISTS R LV L LQ - 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 101 htga AA AG KV V E AFG H F L VGGN F A I G IV VF I I LV I IN F M VITKG AG R I AEV G ARF V LDGMPGKQM A ID A D LN AG L I GE DE 180
Cdd:PRK12720 95 ---- HD AG EI V D AFG K F V VGGN L A V G LI VF T I IT I VQ F I VITKG SE R V AEV S ARF S LDGMPGKQM S ID G D MR AG V I DA DE 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 181 A KKR R SE V TQ E ADFY G S MDGA S KFV R GDAIAGI LIMVI N VV GG LLV GV L QH G MS MGS A AES Y TL L T IGDGL VA QIP A L V I 260
Cdd:PRK12720 171 A RRL R QH V QK E SRLL G A MDGA M KFV K GDAIAGI IVILV N II GG III GV M QH D MS ASE A VNT Y AV L S IGDGL CG QIP S L L I 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 261 S TA AG V IVTRV -- STD Q DVGEQMVG Q LFSN P RVML LAA A VL G L LGMV PG M P NLV F LLFT A ALLGL A WW LR GREEKAPEEP 338
Cdd:PRK12720 251 S IT AG I IVTRV pg EKR Q NLANELSS Q IGRQ P QALW LAA V VL M L FALI PG F P FIT F AFLA A LVAAP A IL LR RKKSVVSANG 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 339 QPVKMP E ----- NNS V VE A TWNDVQ L EDS L gmevgyrlipmvdfq QDGE L LGR I RSI R KKFAQ D M G FLP P V V H I RDNMD L 413
Cdd:PRK12720 331 VEAGGS E egpeg DSM V PG A CPLMLR L APT L --------------- HSAD L IRD I DAL R WFLFE D L G VPL P E V N I EVDPE L 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 414 QPARYRI L MKGVEIG S GDAY P GRW L AINPGT A ag T L P G EKTVD P AFGLDAI W IESALK EQAQ IQ G FT V VEA S TVVATH L N 493
Cdd:PRK12720 396 TEKTLTV L LYQEPVL S LSLP P QAL L LLIGPD A -- S L V G DSQTL P NGMGQIC W LTKDQA EQAQ GF G LD V FAG S QRISAL L K 473
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 494 HLIGQFSA E LF G R QE AQQ L L D RVSQEMPK L TED L v PGVVTLTTLHKV LQ N L LA E K V P IRD M RTI LE TL A E H AP LQS D PHE 573
Cdd:PRK12720 474 CVLLRYMG E FI G V QE TRY L M D AMEKRYGE L VKE L - QRQLPVGKIAEI LQ R L VS E R V S IRD L RTI FG TL V E W AP REK D VVM 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 574 LT AV VR V AL G R A I TQQWFPGNEEVQ V IGLDTAL E R L LLQAL - Q GGG G ---- L EPGLAARL L AQTQE AL SRQEM L gapp VL 648
Cdd:PRK12720 553 LT EY VR I AL R R H I LRRFNHEGKWLP V LRIGEGI E N L IRESI r Q TSA G tysa L SSRHSTQI L QLIEQ AL KQSQK L ---- VL 628
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 2496540373 649 LVNHAL R PL L SRFLR R S L PQ L V VLS NL EL S D NRH I RMTAT I 689
Cdd:PRK12720 629 VTSVDV R RF L RKIIE R T L FD L P VLS WQ EL G D EAE I KVVGS I 669
PRK05910
PRK05910 type III secretion system protein; Validated
12-677
1.33e-50
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 185.76
E-value: 1.33e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 12 S N LKSTQ W QIL A G P IL IL LI L smm VL PLP AFI LD LLFTF N I ALS IMVLLVAMFTQRTLDFAA FP TIL L FTT LLRL A LN V A 91
Cdd:PRK05910 3 N N KRGSS W KMV A I P LC IL FT L --- IF PLP QWL LD FGLCI N F ALS LSIVFWVFSLRSSASARL FP SLF L YLC LLRL G LN L A 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 92 STR I IL ME G htgaa A A GKVVEAF G H F LVG G NFAIGIVVFII L VII NF M VITKG AG RIAEV G ARF V L DGM PGKQM AI DADL 171
Cdd:PRK05910 80 STR W IL SS G ----- W A SPLIFSL G N F FSL G SLPAALTACLL L FLV NF L VITKG SE RIAEV R ARF S L EAL PGKQM SL DADL 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 172 NA G LIGEDEAK K RRSEVTQ E A DF YGS M D G ASK FV R GDAI AGILIMVI N VVGGLLV gvlqh G MSM G S A AESYT L LTI GD G L 251
Cdd:PRK05910 155 VS G RASYSRVS K QKNSLLE E S DF FSA M E G VFR FV K GDAI MSCILLGV N ILAATFL ----- G RAT G Y A VGDLW L TVL GD A L 229
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 252 V A Q I PAL VI S T AA GVIVTR V STDQDVGEQMV g QLFSNP R V - MLLA A AV L GL L GMV PG M P NLVF L L F TAA L lglaw W L RGR 330
Cdd:PRK05910 230 V S Q V PAL LT S C AA ATLISK V GEKESLLQHLL - DYYEQS R Q h FRFI A LL L CS L ACI PG A P KAPI L G F SVL L ----- F L AYK 303
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 331 EEKAP E EPQPV K mpenn SVV E atwndv QL E DS L GM E vgyrlipmvdfq QD G ELLGRI R SI R KKFA Q DM G - FL P PVVHI R d 409
Cdd:PRK05910 304 NPSSG E TLLFQ K ----- ERF E ------ FV E LA L PD E ------------ GV G NPANLY R AA R EEIF Q EL G v VF P EEIVV R - 359
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 410 nmd LQPARY R ILMK G V E IGSGDAYPGRW L AINPGT A AGTLPGE ktvdpafgldaiw IESA L K E QA Q IQGFTVV eastvva 489
Cdd:PRK05910 360 --- HVESSP R LIFS G Q E VYLRELSCPAI L PSLRNL A PEAISER ------------- FVKR L V E EF Q EVAGISI ------- 416
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 490 thlnhligqfsaelfgrqeaqqlldrvsqempklt E DLV P GVVTLTT L HKV L QN L LA E K V PIRDMRT ILE TL A EHAPLQS 569
Cdd:PRK05910 417 ----------------------------------- E EII P KKISENS L VFL L RA L VR E R V SLHLFPK ILE AI A VYGSQGK 461
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496540373 570 DPH EL TAV VR VA LG RA I TQQWFPGNEEVQ VI GL D TAL E RLL -- LQA lqggg GLE P GLAARLL AQ TQEA L S R q EML G APPV 647
Cdd:PRK05910 462 SSE EL VEK VR KY LG KQ I GRSLWNRQDTLE VI TI D SHV E QFI rd SYS ----- KSN P DMNEKVV AQ VKSL L E R - SGE G NFRA 535
650 660 670
....*....|....*....|....*....|
gi 2496540373 648 LLVNHAL R PL L SRFLRRSL P Q L V VLS NL EL 677
Cdd:PRK05910 536 IVTGCET R FE L KKMVDPYF P D L L VLS HS EL 565
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
