|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
93-392 |
1.12e-180 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 504.25 E-value: 1.12e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 93 SAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKD 168
Cdd:PRK10416 11 EKKEGWFERLKKGLSKTrenfGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 169 ALHDLLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV 248
Cdd:PRK10416 91 LLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 249 TVVQQESG-DPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALT 327
Cdd:PRK10416 171 PVIAQKEGaDPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2461891133 328 QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:PRK10416 251 QAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
98-392 |
2.36e-163 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 459.87 E-value: 2.36e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 98 WLARLKTGLAKT----GSSITGVFVNT-KIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKDALHD 172
Cdd:COG0552 1 FFERLKEGLSKTrsglGEKLKSLFSGKkKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 173 LLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV- 251
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIa 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 252 QQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKA 331
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2461891133 332 FDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
121-391 |
2.85e-120 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 349.63 E-value: 2.85e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 121 KIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-----QPLVM 195
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELiveenKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 196 MIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARARKI 274
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGaDPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 275 DVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGI 354
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2461891133 355 LAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALL 391
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
194-390 |
1.92e-105 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 309.12 E-value: 1.92e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGaDPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
192-392 |
5.16e-93 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 277.37 E-value: 5.16e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 192 PLVMMIAGVNGAGKTTSIGKLAKHLQSFDQ-SVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAA 269
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGkKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGaDPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 270 RARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGT 349
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2461891133 350 AKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
194-390 |
2.57e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 267.87 E-value: 2.57e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGaDPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
93-392 |
1.12e-180 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 504.25 E-value: 1.12e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 93 SAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKD 168
Cdd:PRK10416 11 EKKEGWFERLKKGLSKTrenfGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 169 ALHDLLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV 248
Cdd:PRK10416 91 LLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 249 TVVQQESG-DPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALT 327
Cdd:PRK10416 171 PVIAQKEGaDPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2461891133 328 QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:PRK10416 251 QAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
98-392 |
2.36e-163 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 459.87 E-value: 2.36e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 98 WLARLKTGLAKT----GSSITGVFVNT-KIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKDALHD 172
Cdd:COG0552 1 FFERLKEGLSKTrsglGEKLKSLFSGKkKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 173 LLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV- 251
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIa 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 252 QQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKA 331
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2461891133 332 FDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
121-391 |
2.85e-120 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 349.63 E-value: 2.85e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 121 KIDEDLYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-----QPLVM 195
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELiveenKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 196 MIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARARKI 274
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGaDPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 275 DVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGI 354
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2461891133 355 LAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALL 391
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
194-390 |
1.92e-105 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 309.12 E-value: 1.92e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGaDPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
192-392 |
5.16e-93 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 277.37 E-value: 5.16e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 192 PLVMMIAGVNGAGKTTSIGKLAKHLQSFDQ-SVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAA 269
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGkKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGaDPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 270 RARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGT 349
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2461891133 350 AKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
194-390 |
2.57e-89 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 267.87 E-value: 2.57e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGaDPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
77-392 |
8.07e-80 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 248.73 E-value: 8.07e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 77 EVVETVEIVPPPLQDASAKKSwlarlKTGLAKTGSSITGVFVNTKIDE----DLYEELETALLMSDAGVDATEYLLGALR 152
Cdd:PRK14974 18 EKIEEEEEEEAPEAEEEEEEE-----DEEEKKEKPGFFDKAKITEIKEkdieDLLEELELELLESDVALEVAEEILESLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 153 EKV---RTGRLTDPQQ-VKDALHDLLVELLTPLEKSLMLGRAQ----PLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVL 224
Cdd:PRK14974 93 EKLvgkKVKRGEDVEEiVKNALKEALLEVLSVGDLFDLIEEIKskgkPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 225 LAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIa 303
Cdd:PRK14974 173 IAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGaDPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVT- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 304 kahdgAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 383
Cdd:PRK14974 252 -----KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDP 326
|
....*....
gi 2461891133 384 VEFADALLG 392
Cdd:PRK14974 327 DWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
194-390 |
3.63e-75 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 231.49 E-value: 3.63e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGtDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
150-392 |
7.49e-72 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 230.68 E-value: 7.49e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 150 ALREKVRTGrLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGD 229
Cdd:COG0541 59 ALGEEVLKS-LTPGQQVIKIVHDELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAAD 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 230 TFRAAAREQLAVWGERNNVTVVQ-QESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIakahdg 308
Cdd:COG0541 138 VYRPAAIEQLKTLGEQIGVPVFPeEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAV------ 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 309 APHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGilAAI-ARQRP-VPVYFIGVGEKVEDLQPFSAVEF 386
Cdd:COG0541 212 NPDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGG--AALsIRAVTgKPIKFIGTGEKLDDLEPFHPDRM 289
|
....*.
gi 2461891133 387 ADALLG 392
Cdd:COG0541 290 ASRILG 295
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
194-381 |
1.40e-60 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 193.97 E-value: 1.40e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGqSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKG 352
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 2461891133 353 GILAAIARQRPVPVYFIGVGEKVEDLQPF 381
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
102-392 |
1.65e-55 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 188.49 E-value: 1.65e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 102 LKTGLAKTGSSITGVfvnTKIDEDLYEE----LETALLMSDAGVDATEYLLG-----ALREKVRTGrLTDPQQVKDALHD 172
Cdd:PRK00771 1 LGESLRDALKKLAGK---SRIDEKTVKEvvkdIQRALLQADVNVKLVKELSKsikerALEEEPPKG-LTPREHVIKIVYE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 173 LLVELL----TPLEKSLmlgraQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV 248
Cdd:PRK00771 77 ELVKLLgeetEPLVLPL-----KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 249 TVVqqesGDPAAVifDAVSAAR-----ARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQ 323
Cdd:PRK00771 152 PFY----GDPDNK--DAVEIAKeglekFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQ 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 324 NALTQVKAFDDALGLTGLIVTKLDGTAKGG-ILAAIARQRpVPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:PRK00771 220 QAKNQAKAFHEAVGIGGIIITKLDGTAKGGgALSAVAETG-APIKFIGTGEKIDDLERFDPDRFISRLLG 288
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
194-386 |
4.35e-49 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 164.29 E-value: 4.35e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEkDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVKRVIAkahdgaPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAK- 351
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKg 155
|
170 180 190
....*....|....*....|....*....|....*
gi 2461891133 352 GGILAAIARQRpVPVYFIGVGEKVEDLQPFSAVEF 386
Cdd:cd17875 156 GGALSAVAATG-APIIFIGTGEHIDDLEPFDPKRF 189
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
106-392 |
3.58e-45 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 161.16 E-value: 3.58e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 106 LAKTGSSITGVFVN----TKIDED----LYEELETALLMSDAGVDATEYLLGALREKVRTGRLTDP----QQVKDALHDL 173
Cdd:TIGR01425 2 LAQLGSSLVTALRSmssaTVIDEEvintMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGinkrKLIQDAVFEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 174 LVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-Q 252
Cdd:TIGR01425 82 LCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYgS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 253 QESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIakahdgAPHEVLLVIDANTGQNALTQVKAF 332
Cdd:TIGR01425 162 YEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAI------KPDSIIFVMDGSIGQAAFGQAKAF 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2461891133 333 DDALGLTGLIVTKLDGTAK-GGILAAIARQRPvPVYFIGVGEKVEDLQPFSAVEFADALLG 392
Cdd:TIGR01425 236 KDSVEVGSVIITKLDGHAKgGGALSAVAATKS-PIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
194-390 |
1.05e-35 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 129.66 E-value: 1.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDAVSAARAR 272
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGkDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 273 KIDVMMADTAGRLPTQLHLMEELKKVkrviakAHDGAPHEVLLVIDANTGQNALTQVKAFDDAL----------GLTGLI 342
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKL------IKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIV 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2461891133 343 VTKLD------GTAKGgiLAAIARQrpvPVYFIGVGEKVEDLQPFSAVEFADAL 390
Cdd:cd17876 156 LTKFDtiddkvGAALS--MVYATGQ---PIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
96-392 |
1.15e-31 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 123.05 E-value: 1.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 96 KSWLARLKTGLAKTGSSITGVFVntkideDLYEELEtallmsDAGVDatEYLLGALREKVRTGrlTDPQQVKDALHDLLV 175
Cdd:COG1419 87 KELLEEQLSGLAGESARLPPELA------ELLERLL------EAGVS--PELARELLEKLPED--LSAEEAWRALLEALA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 176 ELLTPLEKSLMlgrAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQ-SVLLAAGDTFRAAAREQLAVWGERNNVtvvqqe 254
Cdd:COG1419 151 RRLPVAEDPLL---DEGGVIALVGPTGVGKTTTIAKLAARFVLRGKkKVALITTDTYRIGAVEQLKTYARILGV------ 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 255 sgdPAAVIFDAVSAARA----RKIDVMMADTAGRLPTQLHLMEELKKVkrviakAHDGAPHEVLLVIDANT-GQNALTQV 329
Cdd:COG1419 222 ---PVEVAYDPEELKEAlerlRDKDLVLIDTAGRSPRDPELIEELKAL------LDAGPPIEVYLVLSATTkYEDLKEIV 292
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2461891133 330 KAFDDaLGLTGLIVTKLDGTAK-GGILAAIARQRpVPVYFIGVGEKV-EDLQPFSAVEFADALLG 392
Cdd:COG1419 293 EAFSS-LGLDGLILTKLDETASlGSILNLLIRTG-LPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
194-387 |
5.72e-25 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 100.32 E-value: 5.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLA-KHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVtvvqqesgdPAAVIFDAVSAARA- 271
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAaRYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI---------PVEVAEDPEDLADAl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 272 ---RKIDVMMADTAGRLPTQLHLMEELKKvkrvIAKAHDGAphEVLLVIDANT-GQNALTQVKAFDdALGLTGLIVTKLD 347
Cdd:cd17873 73 erlSDRDLILIDTAGRSPRDKEQLEELKE----LLGAGEDI--EVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKLD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2461891133 348 GTAKGGILAAIARQRPVPVYFIGVGEKV-EDLQPFSAVEFA 387
Cdd:cd17873 146 ETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
147-392 |
6.96e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 87.64 E-value: 6.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 147 LLGALREKV--RTGRLTDPQQ--VKDALHDLLVELLTPLEKSLMLGRAqplVMMIAGVNGAGKTTSIGKLAKHLQSFD-- 220
Cdd:PRK05703 175 LSPEIAEKLlkLLLEHMPPRErtAWRYLLELLANMIPVRVEDILKQGG---VVALVGPTGVGKTTTLAKLAARYALLYgk 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 221 QSVLLAAGDTFRAAAREQLAVWGERNNVtvvqqesgdPAAVIFDAVSAARA----RKIDVMMADTAGRLPTQLHLMEELK 296
Cdd:PRK05703 252 KKVALITLDTYRIGAVEQLKTYAKIMGI---------PVEVVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRLIEELK 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 297 KVkrviaKAHDGAPHEVLLVIDANTGQNALTQ-VKAFDDaLGLTGLIVTKLDGTAK-GGILAAIARQRpVPVYFIGVGEK 374
Cdd:PRK05703 323 AL-----IEFSGEPIDVYLVLSATTKYEDLKDiYKHFSR-LPLDGLIFTKLDETSSlGSILSLLIESG-LPISYLTNGQR 395
|
250
....*....|....*....
gi 2461891133 375 V-EDLQPFSAVEFADALLG 392
Cdd:PRK05703 396 VpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
110-178 |
2.15e-15 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 70.66 E-value: 2.15e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2461891133 110 GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVR---TGRLTDPQQVKDALHDLLVELL 178
Cdd:smart00963 6 GKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKgevLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
177-383 |
1.16e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 66.17 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 177 LLTPLEKSLMLGRAQPL----VMMIAGVNGAGKTTSIGKLAKHL--QSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTV 250
Cdd:PRK12727 331 MLGLLSKRLPVAPVDPLerggVIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 251 VQQESGDPAAVIFDavsaaRARKIDVMMADTAG------RLPTQLHLMEELKKVKRviakahdgaphevLLVIDANTGQN 324
Cdd:PRK12727 411 HEADSAESLLDLLE-----RLRDYKLVLIDTAGmgqrdrALAAQLNWLRAARQVTS-------------LLVLPANAHFS 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 325 ALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKV-EDLQPFSA 383
Cdd:PRK12727 473 DLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANA 532
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
110-174 |
2.06e-11 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 59.40 E-value: 2.06e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2461891133 110 GSSITGVFVN----TKIDEDLYEE----LETALLMSDAGVDATEYLLGALREK-VRTGRLTDPQQVKDALHDLL 174
Cdd:pfam02881 2 GEKLSSLFKGlrgkGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
194-377 |
8.21e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 59.73 E-value: 8.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLA-KHLQSFDQS-VLLAAGDTFRAAAREQLAVWGERNNVTV-VQQESGDPAavifdaVSAAR 270
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAaRCVMRFGASkVALLTTDSYRIGGHEQLRIFGKILGVPVhAVKDGGDLQ------LALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 271 ARKIDVMMADTAGrlptqlhLMEELKKVKRVIAKAHDG-APHEVLLVIDANTGQNALTQV-KAFDDALG--------LTG 340
Cdd:PRK14722 213 LRNKHMVLIDTIG-------MSQRDRTVSDQIAMLHGAdTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAG 285
|
170 180 190
....*....|....*....|....*....|....*...
gi 2461891133 341 LIVTKLDGTAK-GGILAAIARQRpVPVYFIGVGEKVED 377
Cdd:PRK14722 286 CILTKLDEASNlGGVLDTVIRYK-LPVHYVSTGQKVPE 322
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
191-321 |
1.39e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.23 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 191 QPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLavwgeRNNVTVVQQESGDPAAVIFDAVSAAR 270
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL-----LLIIVGGKKASGSGELRLRLALALAR 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2461891133 271 ARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHdgAPHEVLLVIDANT 321
Cdd:smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL--KSEKNLTVILTTN 124
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
151-375 |
4.42e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 54.52 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 151 LREKVRTGRLTDPQQVKDALHDLLVEllTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAK----HLQSFDQSVLLA 226
Cdd:PRK12723 135 IKKEFSLSDLDDYDKVRDSVIIYIAK--TIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAiygiNSDDKSLNIKII 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 227 AGDTFRAAAREQLAVWGERNNVTVVQQES-GDPAAVIFDavsaarARKIDVMMADTAGRLPTQLHLMEELKKVKRVIaka 305
Cdd:PRK12723 213 TIDNYRIGAKKQIQTYGDIMGIPVKAIESfKDLKEEITQ------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNAC--- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2461891133 306 hdGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAK-GGILAAIARQRPVpVYFIGVGEKV 375
Cdd:PRK12723 284 --GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCvGNLISLIYEMRKE-VSYVTDGQIV 351
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
188-381 |
1.38e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 53.04 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 188 GRAQPLVMMIAGVNGAGKTTSIGKL-AKHLQSFDQSVLLAAGDTFRAAAREQLAVWgernnvtvvqqesGDPAAVIFDAV 266
Cdd:PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLaAKYFLHMGKSVSLYTTDNYRIAAIEQLKRY-------------ADTMGMPFYPV 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 267 SAARARK-------IDVMMADTAGRLPTQLHLMEELKKVKRVIAKaHDGAphEVLLVIDANTG-QNALTQVKAFdDALGL 338
Cdd:PRK12724 286 KDIKKFKetlardgSELILIDTAGYSHRNLEQLERMQSFYSCFGE-KDSV--ENLLVLSSTSSyHHTLTVLKAY-ESLNY 361
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2461891133 339 TGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVedlqPF 381
Cdd:PRK12724 362 RRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV----PF 400
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
125-283 |
1.38e-07 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 52.34 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 125 DLYEELEtallmsDAGVDatEYLLGALREKVRTGrlTDPQQVKDALHDLLVELLT--PLEKSLMlgrAQPLVMMIAGVNG 202
Cdd:TIGR03499 138 KLYERLL------EAGVS--EELARELLEKLPED--ADAEDAWRWLREALEGMLPvkPEEDPIL---EQGGVIALVGPTG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 203 AGKTTSIGKLA-KHLQSFD-QSVLLAAGDTFRAAAREQLAVWGERNNVtvvqqesgdPAAVIFDAVSAARA----RKIDV 276
Cdd:TIGR03499 205 VGKTTTLAKLAaRFALEHGkKKVALITTDTYRIGAVEQLKTYAEILGI---------PVKVARDPKELREAldrlRDKDL 275
|
....*..
gi 2461891133 277 MMADTAG 283
Cdd:TIGR03499 276 ILIDTAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
190-388 |
2.50e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 52.88 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 190 AQPLVMMIAGVNGAGKTTSIGKLAKHL---QSFDQSVLLAAgDTFRAAAREQLAVWGERNNVTVvqqESGDPAAVIFDAV 266
Cdd:PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCvarEGADQLALLTT-DSFRIGALEQLRIYGRILGVPV---HAVKDAADLRFAL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 267 SAARARKIdvMMADTAGrlptqlhLMEELKKVKRVIAK-AHDGAPHEVLLVIDANTGQNALTQV-KAF--DDALGLTGLI 342
Cdd:PRK14723 259 AALGDKHL--VLIDTVG-------MSQRDRNVSEQIAMlCGVGRPVRRLLLLNAASHGDTLNEVvHAYrhGAGEDVDGCI 329
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2461891133 343 VTKLD-GTAKGGILAAIARQRpVPVYFIGVGEKV-EDLQPFSAVEFAD 388
Cdd:PRK14723 330 ITKLDeATHLGPALDTVIRHR-LPVHYVSTGQKVpEHLELAQADELVD 376
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
194-377 |
3.92e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 48.58 E-value: 3.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESgdPAAVIFDAVSAARARK 273
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS--PAELEEAVQYMTYVNC 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 274 IDVMMADTAGRlptqLHLMEElkKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGG 353
Cdd:PRK12726 286 VDHILIDTVGR----NYLAEE--SVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIG 359
|
170 180
....*....|....*....|....
gi 2461891133 354 ILAAIARQRPVPVYFIGVGEKVED 377
Cdd:PRK12726 360 DLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
194-379 |
6.77e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 48.02 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 194 VMMIAGVNGAGKTTSIGKLAKH--LQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESGDPAAVIFDAVSAARA 271
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHM 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 272 RKID-VMMADTAGRLPTQLHLMEEL-KKVKRviakahdgaphevLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGT 349
Cdd:PRK14721 273 VLIDtVGMSQRDQMLAEQIAMLSQCgTQVKH-------------LLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEA 339
|
170 180 190
....*....|....*....|....*....|..
gi 2461891133 350 AKGGI-LAAIARQRPVpVYFIGVGEKV-EDLQ 379
Cdd:PRK14721 340 ASLGIaLDAVIRRKLV-LHYVTNGQKVpEDLH 370
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
142-376 |
1.59e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 46.60 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 142 DATEYLLGALREKVR-----TGRLTDPQQVKDALHDLLVELLTP--LEKSLMlgraqplVMMIAGVNGAGKTTSIGKLAK 214
Cdd:PRK11889 191 DVEQYFIHAYAEKLKvkfenATMITEEEVIEYILEDMRSHFNTEnvFEKEVQ-------TIALIGPTGVGKTTTLAKMAW 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 215 HLQSFDQSVLLAAGDTFRAAAREQLavwgeRNNVTVVqqesGDPAAVIFDAVSAARA-------RKIDVMMADTAGR-LP 286
Cdd:PRK11889 264 QFHGKKKTVGFITTDHSRIGTVQQL-----QDYVKTI----GFEVIAVRDEAAMTRAltyfkeeARVDYILIDTAGKnYR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 287 TQLHLMEELKKVKRViakahdgAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPV 366
Cdd:PRK11889 335 ASETVEEMIETMGQV-------EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPI 407
|
250
....*....|
gi 2461891133 367 YFIGVGEKVE 376
Cdd:PRK11889 408 VLMTDGQDVK 417
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
142-376 |
1.96e-05 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 45.89 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 142 DATEYLLGALREKVRTgRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQ 221
Cdd:PRK06731 26 DVEQYFIHAYAEKLKV-KFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 222 SVLLAAGDTFRAAAREQLAVWGERNNVTVVQQEsgDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELkkvkrv 301
Cdd:PRK06731 105 TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR--DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM------ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2461891133 302 IAKAHDGAPHEVLLVIDANTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVE 376
Cdd:PRK06731 177 IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
199-378 |
6.13e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 41.88 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 199 GVNGAGKTTSIGKLA-----KHLQSfdqSVLLAAGDTFRAAAREQLAVWGERNNVTV--VQQEsGDPAAvifdAVSAARA 271
Cdd:PRK06995 263 GPTGVGKTTTTAKLAarcvmRHGAS---KVALLTTDSYRIGGHEQLRIYGKILGVPVhaVKDA-ADLRL----ALSELRN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461891133 272 RKIdvMMADTAG-----RLptqlhlmeelkkVKRVIAKAHD-GAPHEVLLVIDANTGQNALTQV-KAFDDAlGLTGLIVT 344
Cdd:PRK06995 335 KHI--VLIDTIGmsqrdRM------------VSEQIAMLHGaGAPVKRLLLLNATSHGDTLNEVvQAYRGP-GLAGCILT 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 2461891133 345 KLD-GTAKGGILAAIARQRpVPVYFIGVGEKV-EDL 378
Cdd:PRK06995 400 KLDeAASLGGALDVVIRYK-LPLHYVSNGQRVpEDL 434
|
|
| |
