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Conserved domains on  [gi|2417405901|ref|WP_269471519|]
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HNH endonuclease family protein [Acidipropionibacterium jensenii]

Protein Classification

HNH endonuclease family protein( domain architecture ID 10539890)

HNH endonuclease family protein-containing a DUF1524 domain with a conserved HXXP motif, may function as an endonuclease

PubMed:  32807610

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1524 pfam07510
Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a ...
 231-325 5.29e-23

Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.


:

Pssm-ID: 462188 [Multi-domain]  Cd Length: 141  Bit Score: 95.22  E-value: 5.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2417405901 231 TIEHVMPQSLSAEWRkalegeiePGADVDEMHRQALHTLGNLTLT--GYNSEMSNGVFAVKRPRLQHSGLLMNQSIADQE 308
Cdd:pfam07510  53 QIEHILPQNPAWGWG--------AGQWDEEQREIYVNDLGNLTLLtgSLNSAASNKDFLPKRKAYEKSCLYLTRQLAVKD 124

                          90
                  ....*....|....*..
gi 2417405901 309 SWGPEQIAHRADTLAEE 325
Cdd:pfam07510 125 KWNEEVIEARQEALAKV 141
 
Name Accession Description Interval E-value
DUF1524 pfam07510
Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a ...
 231-325 5.29e-23

Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.


Pssm-ID: 462188 [Multi-domain]  Cd Length: 141  Bit Score: 95.22  E-value: 5.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2417405901 231 TIEHVMPQSLSAEWRkalegeiePGADVDEMHRQALHTLGNLTLT--GYNSEMSNGVFAVKRPRLQHSGLLMNQSIADQE 308
Cdd:pfam07510  53 QIEHILPQNPAWGWG--------AGQWDEEQREIYVNDLGNLTLLtgSLNSAASNKDFLPKRKAYEKSCLYLTRQLAVKD 124

                          90
                  ....*....|....*..
gi 2417405901 309 SWGPEQIAHRADTLAEE 325
Cdd:pfam07510 125 KWNEEVIEARQEALAKV 141
 
Name Accession Description Interval E-value
DUF1524 pfam07510
Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a ...
 231-325 5.29e-23

Protein of unknown function (DUF1524); This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.


Pssm-ID: 462188 [Multi-domain]  Cd Length: 141  Bit Score: 95.22  E-value: 5.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2417405901 231 TIEHVMPQSLSAEWRkalegeiePGADVDEMHRQALHTLGNLTLT--GYNSEMSNGVFAVKRPRLQHSGLLMNQSIADQE 308
Cdd:pfam07510  53 QIEHILPQNPAWGWG--------AGQWDEEQREIYVNDLGNLTLLtgSLNSAASNKDFLPKRKAYEKSCLYLTRQLAVKD 124

                          90
                  ....*....|....*..
gi 2417405901 309 SWGPEQIAHRADTLAEE 325
Cdd:pfam07510 125 KWNEEVIEARQEALAKV 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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