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Conserved domains on  [gi|2324760926|ref|WP_264507066|]
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ABC transporter permease subunit [Pararhodobacter zhoushanensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BatB super family cl34784
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 16-375 5.47e-99

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


The actual alignment was detected with superfamily member COG4597:

Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 298.98  E-value: 5.47e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  16 QAVVFAAVGLLLFWLFAITGAELRARGIETGFGFLFEPARTAIANAPFTFTPGvNSNALALLAGGLNTLKISALVIVLAT 95
Cdd:COG4597    29 QVLALALVVALVWYLVSNTLANLAARGIATGFGFLDRTAGFDISQSLIPYSPT-DTYGRAFLVGLLNTLLVAVLGIVLAT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  96 LLGLGLGLGRLSRNRLLRGVCLGYIELVRNVPVLIHISLCYAVAL-SLPGPRET-EPFLGALITNRGFFLPYPAPD---M 170
Cdd:COG4597   108 ILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVLeALPSPRQSlSLFDGVFLNNRGLYLPAPVFEpgfG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 171 LWLGSALTGLLAALAVARWRRH----GGRWHPGALVFVLLTLAAMALPWLVLGRAPDMVTPAVAGFRVNGGWSLSPELIA 246
Cdd:COG4597   188 WVLAALLAAIVAAFVLRRWARRrqeaTGQRFPVWWISLALLVGLPLLAFLLLGAPLSLDYPELKGFNFRGGLTLSPEFVA 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 247 IVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQE 326
Cdd:COG4597   268 LLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPD 347

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2324760926 327 IVGI-GNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTAWATR 375
Cdd:COG4597   348 LVSVfAGTTLNQTGQAIEIIAITMAVYLTISLLISLLMNWYNRRVALVER 397
 
Name Accession Description Interval E-value
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 16-375 5.47e-99

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 298.98  E-value: 5.47e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  16 QAVVFAAVGLLLFWLFAITGAELRARGIETGFGFLFEPARTAIANAPFTFTPGvNSNALALLAGGLNTLKISALVIVLAT 95
Cdd:COG4597    29 QVLALALVVALVWYLVSNTLANLAARGIATGFGFLDRTAGFDISQSLIPYSPT-DTYGRAFLVGLLNTLLVAVLGIVLAT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  96 LLGLGLGLGRLSRNRLLRGVCLGYIELVRNVPVLIHISLCYAVAL-SLPGPRET-EPFLGALITNRGFFLPYPAPD---M 170
Cdd:COG4597   108 ILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVLeALPSPRQSlSLFDGVFLNNRGLYLPAPVFEpgfG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 171 LWLGSALTGLLAALAVARWRRH----GGRWHPGALVFVLLTLAAMALPWLVLGRAPDMVTPAVAGFRVNGGWSLSPELIA 246
Cdd:COG4597   188 WVLAALLAAIVAAFVLRRWARRrqeaTGQRFPVWWISLALLVGLPLLAFLLLGAPLSLDYPELKGFNFRGGLTLSPEFVA 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 247 IVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQE 326
Cdd:COG4597   268 LLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPD 347

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2324760926 327 IVGI-GNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTAWATR 375
Cdd:COG4597   348 LVSVfAGTTLNQTGQAIEIIAITMAVYLTISLLISLLMNWYNRRVALVER 397
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 246-369 7.32e-17

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 78.56  E-value: 7.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 246 AIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQ 325
Cdd:PRK09494   92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVA 171

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2324760926 326 EIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:PRK09494  172 ELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 242-369 1.23e-16

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 77.97  E-value: 1.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 242 PELIAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVV 321
Cdd:TIGR03003  84 PALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSA 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2324760926 322 IGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:TIGR03003 164 ITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 195-360 2.11e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.44  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 195 RWHPGALVFVLLTLAAMALPWLVLGrapdmvTPAVAGFRVNGGWSLSPELI-AIVAALTLYTATFLGEIIRGAIQSVPRG 273
Cdd:cd06261    29 KRGKLDRLLRRIIDLLLSLPSLVLG------LLLVLLFGVLLGWGILPGLGlPALILALLLIAPFARLIRRAALESIPKD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 274 QWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFV 353
Cdd:cd06261   103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182


                  ....*..
gi 2324760926 354 AVSLAFS 360
Cdd:cd06261   183 LILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 202-370 8.85e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 8.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 202 VFVLLTLAAMALPWLVLgrAPDMVTPAVAGFRVNGGWslspeliAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEAL 281
Cdd:pfam00528  19 LLRPLIDLLQALPSFVL--AILLVVIAILSILGHGIL-------PAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 282 ALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGyqEIVGIGNTVL-----FDTGQAVEVMAVLAAFFVAVS 356
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG--SWPGLGLLLIeailgYDYPEIQGPVLAAALILLLLN 167

                         170
                  ....*....|....
gi 2324760926 357 LAFSALMNFLNTRT 370
Cdd:pfam00528 168 LLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 16-375 5.47e-99

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 298.98  E-value: 5.47e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  16 QAVVFAAVGLLLFWLFAITGAELRARGIETGFGFLFEPARTAIANAPFTFTPGvNSNALALLAGGLNTLKISALVIVLAT 95
Cdd:COG4597    29 QVLALALVVALVWYLVSNTLANLAARGIATGFGFLDRTAGFDISQSLIPYSPT-DTYGRAFLVGLLNTLLVAVLGIVLAT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  96 LLGLGLGLGRLSRNRLLRGVCLGYIELVRNVPVLIHISLCYAVAL-SLPGPRET-EPFLGALITNRGFFLPYPAPD---M 170
Cdd:COG4597   108 ILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVLeALPSPRQSlSLFDGVFLNNRGLYLPAPVFEpgfG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 171 LWLGSALTGLLAALAVARWRRH----GGRWHPGALVFVLLTLAAMALPWLVLGRAPDMVTPAVAGFRVNGGWSLSPELIA 246
Cdd:COG4597   188 WVLAALLAAIVAAFVLRRWARRrqeaTGQRFPVWWISLALLVGLPLLAFLLLGAPLSLDYPELKGFNFRGGLTLSPEFVA 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 247 IVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQE 326
Cdd:COG4597   268 LLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPD 347

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2324760926 327 IVGI-GNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTAWATR 375
Cdd:COG4597   348 LVSVfAGTTLNQTGQAIEIIAITMAVYLTISLLISLLMNWYNRRVALVER 397
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 76-373 4.81e-38

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 135.97  E-value: 4.81e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926  76 LLAGGLNTLKISALVIVLATLLGLGLGLGRLSRNRLLRGVCLGYIELVRNVPVLIHISLCYavalslpgpretepflgal 155
Cdd:COG0765    15 LLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIY------------------- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 156 itnrgFFLPYPapdmlwlgsaltgllaalavarwrrhggrwhpgalvfvlltlaamalpwlvlgrapdmvtpavagfrvn 235
Cdd:COG0765    76 -----FGLPLL--------------------------------------------------------------------- 81

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 236 gGWSLSPELIAIVAaLTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKN 315
Cdd:COG0765    82 -GIDLSPFVAAVIA-LTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKD 159

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2324760926 316 SSLAVVIGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTAWA 373
Cdd:COG0765   160 TSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARG 217
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 250-369 1.21e-24

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 100.55  E-value: 1.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 250 ALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQEIVG 329
Cdd:COG4160   101 ALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLKATALASTITVMDLTG 180

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2324760926 330 IGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:COG4160   181 VARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERR 220
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
242-376 1.50e-17

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 80.94  E-value: 1.50e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 242 PELIAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVV 321
Cdd:COG4215   101 NPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTALVSV 180

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2324760926 322 IGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTAWATRT 376
Cdd:COG4215   181 IGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERRASRGVRR 235
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 246-369 7.32e-17

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 78.56  E-value: 7.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 246 AIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQ 325
Cdd:PRK09494   92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVA 171

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2324760926 326 EIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:PRK09494  172 ELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 242-369 1.23e-16

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 77.97  E-value: 1.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 242 PELIAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVV 321
Cdd:TIGR03003  84 PALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSA 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2324760926 322 IGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:TIGR03003 164 ITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
PRK15100 PRK15100
cystine ABC transporter permease;
243-327 3.78e-14

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 70.93  E-value: 3.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 243 ELIAIVAAL---TLYTATFLGEIIRGAIQSVPRGQWEATEALAL-PLRTVRRsVIYPQAIRVALPALSNEYIGVIKNSSL 318
Cdd:PRK15100   84 ELDPIPAAMiglSLNTAAYAAETLRAAISSIDKGQWEAAASIGMtRWQTLRR-AILPQAARTALPPLSNSFISLVKDTSL 162


                  ....*....
gi 2324760926 319 AVVIGYQEI 327
Cdd:PRK15100  163 AATIQVPEL 171
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
248-370 1.16e-11

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 63.93  E-value: 1.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 248 VAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQEI 327
Cdd:PRK11123  108 VIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDL 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2324760926 328 VGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRT 370
Cdd:PRK11123  188 MLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRA 230
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
240-371 1.31e-11

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 63.70  E-value: 1.31e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 240 LSPE----LIAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKN 315
Cdd:PRK15107   89 LSPKtdirLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQD 168

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2324760926 316 SSLAVVIGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTA 371
Cdd:PRK15107  169 TSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKRTV 224
artM PRK11122
arginine ABC transporter permease ArtM;
238-369 1.82e-10

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 60.36  E-value: 1.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 238 WSL--SPELIAIVAaLTLYTATFLGEIIRGAIQSVPRGQWEATEALAL-PLRTVRrsVIYPQAIRVALPALSNEYIGVIK 314
Cdd:PRK11122   84 WHLlsQPWLCAMLA-LALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMsKKQTLR--ILLPYAFKRALSSYSNEVVLVFK 160

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2324760926 315 NSSLAVVIGYQEIVGIGNtVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTR 369
Cdd:PRK11122  161 STSLAYTITLMDVMGYSQ-LLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERK 214
PRK15069 PRK15069
histidine ABC transporter permease HisM;
248-362 9.09e-10

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 58.52  E-value: 9.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 248 VAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQEI 327
Cdd:PRK15069  106 ILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTATVPDI 185

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2324760926 328 VGIG---NTVLFDTGQAVEVMAVLaafFVAVSLAFSAL 362
Cdd:PRK15069  186 LKIArdiNSATYQPFQAFGIAAVL---YLIISFVLISL 220
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 237-371 3.12e-09

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 56.40  E-value: 3.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 237 GWSLSPELIAIVAaLTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNS 316
Cdd:TIGR03004  74 GLSLDPVTTGVMV-LGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLT 152

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2324760926 317 SLAVVIGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFVAVSLAFSALMNFLNTRTA 371
Cdd:TIGR03004 153 SLVSLISLADLTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 195-360 2.11e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.44  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 195 RWHPGALVFVLLTLAAMALPWLVLGrapdmvTPAVAGFRVNGGWSLSPELI-AIVAALTLYTATFLGEIIRGAIQSVPRG 273
Cdd:cd06261    29 KRGKLDRLLRRIIDLLLSLPSLVLG------LLLVLLFGVLLGWGILPGLGlPALILALLLIAPFARLIRRAALESIPKD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 274 QWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGYQEIVGIGNTVLFDTGQAVEVMAVLAAFFV 353
Cdd:cd06261   103 LVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVA 182


                  ....*..
gi 2324760926 354 AVSLAFS 360
Cdd:cd06261   183 LILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 202-370 8.85e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 8.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 202 VFVLLTLAAMALPWLVLgrAPDMVTPAVAGFRVNGGWslspeliAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEAL 281
Cdd:pfam00528  19 LLRPLIDLLQALPSFVL--AILLVVIAILSILGHGIL-------PAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 282 ALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIGyqEIVGIGNTVL-----FDTGQAVEVMAVLAAFFVAVS 356
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG--SWPGLGLLLIeailgYDYPEIQGPVLAAALILLLLN 167

                         170
                  ....*....|....
gi 2324760926 357 LAFSALMNFLNTRT 370
Cdd:pfam00528 168 LLVDILQRLLDPRV 181
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
244-328 3.50e-05

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 44.78  E-value: 3.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324760926 244 LIAIVAALTLYTATFLGEIIRGAIQSVPRGQWEATEALALPLRTVRRSVIYPQAIRVALPALSNEYIGVIKNSSLAVVIG 323
Cdd:PRK15135   93 MVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLG 172


                  ....*
gi 2324760926 324 YQEIV 328
Cdd:PRK15135  173 LEDVV 177
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 75-136 6.86e-05

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 41.36  E-value: 6.86e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2324760926  75 ALLAGGLNTLKISALVIVLATLLGLGLGLGRLSRNRLLRGVCLGYIELVRNVPVLIHISLCY 136
Cdd:TIGR01726   4 FLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIY 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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