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Conserved domains on  [gi|2314081423|ref|WP_262603189|]
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MULTISPECIES: 5-oxoprolinase subunit PxpB [unclassified Staphylococcus]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-224 1.09e-101

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 294.74  E-value: 1.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   1 MQFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELElSTYVLSAT 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLR-ALLAELDA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  81 EVNQPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIP 160
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314081423 161 AGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKILYQPGDKIKFYAINEEEFLHIQK 224
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRG 227
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-224 1.09e-101

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 294.74  E-value: 1.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   1 MQFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELElSTYVLSAT 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLR-ALLAELDA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  81 EVNQPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIP 160
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314081423 161 AGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKILYQPGDKIKFYAINEEEFLHIQK 224
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRG 227
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
1-199 2.02e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 257.45  E-value: 2.02e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423    1 MQFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELELSTYVLSAT 80
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   81 EVNQPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIP 160
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 2314081423  161 AGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDP 199
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREP 199
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
2-202 2.24e-84

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 249.78  E-value: 2.24e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   2 QFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELELstyVLSATE 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRA---LLAALE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  82 VN--QPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKI 159
Cdd:pfam02682  78 AAaaPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRV 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2314081423 160 PAGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKIL 202
Cdd:pfam02682 158 PAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPAL 200
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
6-211 7.91e-63

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 195.07  E-value: 7.91e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   6 ISEQSFMIYFDAQINEEIFSEVNAVSDYLKslEHPYIQEIVPSYRAILVYFDGISItYEALLEELELSTYVLSATEVNqp 85
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLE--EQPGFVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVN-- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  86 RRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIPAGSVG 165
Cdd:TIGR00370  76 RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVG 155
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2314081423 166 IANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKILYQPGDKIKF 211
Cdd:TIGR00370 156 IGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-224 1.09e-101

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 294.74  E-value: 1.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   1 MQFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELElSTYVLSAT 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLR-ALLAELDA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  81 EVNQPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIP 160
Cdd:COG2049    84 AAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314081423 161 AGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKILYQPGDKIKFYAINEEEFLHIQK 224
Cdd:COG2049   164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDALRG 227
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
1-199 2.02e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 257.45  E-value: 2.02e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423    1 MQFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELELSTYVLSAT 80
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEALPLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   81 EVNQPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIP 160
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 2314081423  161 AGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDP 199
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREP 199
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
2-202 2.24e-84

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 249.78  E-value: 2.24e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   2 QFKQISEQSFMIYFDAQINEEIFSEVNAVSDYLKSLEHPYIQEIVPSYRAILVYFDGISITYEALLEELELstyVLSATE 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRA---LLAALE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  82 VN--QPRRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKI 159
Cdd:pfam02682  78 AAaaPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRV 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2314081423 160 PAGSVGIANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKIL 202
Cdd:pfam02682 158 PAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPAL 200
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
6-211 7.91e-63

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 195.07  E-value: 7.91e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423   6 ISEQSFMIYFDAQINEEIFSEVNAVSDYLKslEHPYIQEIVPSYRAILVYFDGISItYEALLEELELSTYVLSATEVNqp 85
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLE--EQPGFVECIPGMNNLTVFYDMYEV-YKHLPQRLSSPWEEVKDYEVN-- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314081423  86 RRIVNIPVLYGGKWGPDLEYVAEYHKLSVEEVIQYHIEGYYLVYMIGFMPGFPFLGGLNARIHTPRKEEPRLKIPAGSVG 165
Cdd:TIGR00370  76 RRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVG 155
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2314081423 166 IANNQTGLYPADSPGGWQIIGRTPIDVFDLKRDPKILYQPGDKIKF 211
Cdd:TIGR00370 156 IGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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