putative Ig domain-containing protein, partial [Staphylococcus sp. HMSC063A07]
Protein Classification
cadherin repeat domain-containing protein( domain architecture ID 736143)
cadherin repeat domain-containing protein similar to cadherins, which are calcium-dependent cell adhesion proteins that preferentially interact with themselves in connecting cells
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| CA_like super family | cl46864 | Cadherin repeat-like domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell ... |
6-59 | 5.55e-03 | ||
Cadherin repeat-like domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. This family also includes the cadherin-like repeats of extracellular alpha-dystroglycan. The actual alignment was detected with superfamily member cd11303: Pssm-ID: 481204 [Multi-domain] Cd Length: 99 Bit Score: 33.49 E-value: 5.55e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| Dystroglycan_repeat | cd11303 | Cadherin-like repeat domain of alpha dystroglycan; Dystroglycan is a glycoprotein widely ... |
6-59 | 5.55e-03 | ||
Cadherin-like repeat domain of alpha dystroglycan; Dystroglycan is a glycoprotein widely distributed in skeletal muscle and other tissues; the pre-protein is cleaved into two subunits (alpha and beta) that form a complex which links the extracellular matrix to the cytoskeleton. Cadherin-like dystroglycan repeats are present in the extracellular alpha-dystroglycan subunit, which binds to the alpha-2-laminin G-domain in the basement membrane as part of the dystrophin-dystroglycan-complex (DGC). DGC has been shown to interact with other etxtracellular matrix components as well, such as perlecan and m-agrin, suggesting that the complex may play various different roles depending on the extracellular ligand. Pssm-ID: 206636 [Multi-domain] Cd Length: 99 Bit Score: 33.49 E-value: 5.55e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| Dystroglycan_repeat | cd11303 | Cadherin-like repeat domain of alpha dystroglycan; Dystroglycan is a glycoprotein widely ... |
6-59 | 5.55e-03 | ||
Cadherin-like repeat domain of alpha dystroglycan; Dystroglycan is a glycoprotein widely distributed in skeletal muscle and other tissues; the pre-protein is cleaved into two subunits (alpha and beta) that form a complex which links the extracellular matrix to the cytoskeleton. Cadherin-like dystroglycan repeats are present in the extracellular alpha-dystroglycan subunit, which binds to the alpha-2-laminin G-domain in the basement membrane as part of the dystrophin-dystroglycan-complex (DGC). DGC has been shown to interact with other etxtracellular matrix components as well, such as perlecan and m-agrin, suggesting that the complex may play various different roles depending on the extracellular ligand. Pssm-ID: 206636 [Multi-domain] Cd Length: 99 Bit Score: 33.49 E-value: 5.55e-03
|
||||||
| Blast search parameters | ||||
|
