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Conserved domains on  [gi|2254340598|ref|WP_251520329|]
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MULTISPECIES: 5-oxoprolinase subunit PxpB [Staphylococcus]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 7.65e-103

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 297.44  E-value: 7.65e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   1 MEYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVDITQQNVKQVIDdlQLDQLDESQL 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAA--RLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  81 SMTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRI 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2254340598 161 DAGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCLYEPGDYLKFYAIDEATYEQI 223
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 7.65e-103

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 297.44  E-value: 7.65e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   1 MEYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVDITQQNVKQVIDdlQLDQLDESQL 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAA--RLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  81 SMTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRI 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2254340598 161 DAGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCLYEPGDYLKFYAIDEATYEQI 223
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
1-202 5.30e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 256.30  E-value: 5.30e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598    1 MEYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVD---ITQQNVKQVIDDLqldqLDE 77
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDplvIDPAALLARLRAL----EAL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   78 SQLSMTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPR 157
Cdd:smart00796  77 PLAEALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPR 156
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2254340598  158 TRIDAGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMC 202
Cdd:smart00796 157 TRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
2-203 4.83e-85

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 251.32  E-value: 4.83e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   2 EYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVDITQQNVKQVIDdlQLDQLDESQLS 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEA--RLRALLAALEA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  82 MTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRID 161
Cdd:pfam02682  79 AAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVP 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2254340598 162 AGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCL 203
Cdd:pfam02682 159 AGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPAL 200
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
6-212 4.16e-61

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 190.83  E-value: 4.16e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   6 INEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHdaIVEVIPSYRAIMVNVDItQQNVKQVIDDLQldQLDESqLSMTDS 85
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPG--FVECIPGMNNLTVFYDM-YEVYKHLPQRLS--SPWEE-VKDYEV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  86 RTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRIDAGSV 165
Cdd:TIGR00370  75 NRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSV 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2254340598 166 GIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCLYEPGDYLKF 212
Cdd:TIGR00370 155 GIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-223 7.65e-103

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 297.44  E-value: 7.65e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   1 MEYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVDITQQNVKQVIDdlQLDQLDESQL 80
Cdd:COG2049     5 MRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAA--RLRALLAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  81 SMTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRI 160
Cdd:COG2049    83 AAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRV 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2254340598 161 DAGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCLYEPGDYLKFYAIDEATYEQI 223
Cdd:COG2049   163 PAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFDAL 225
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
1-202 5.30e-87

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 256.30  E-value: 5.30e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598    1 MEYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVD---ITQQNVKQVIDDLqldqLDE 77
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDplvIDPAALLARLRAL----EAL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   78 SQLSMTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPR 157
Cdd:smart00796  77 PLAEALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPR 156
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2254340598  158 TRIDAGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMC 202
Cdd:smart00796 157 TRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
2-203 4.83e-85

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 251.32  E-value: 4.83e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   2 EYKLINEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHDAIVEVIPSYRAIMVNVDITQQNVKQVIDdlQLDQLDESQLS 81
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEA--RLRALLAALEA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  82 MTDSRTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRID 161
Cdd:pfam02682  79 AAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVP 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2254340598 162 AGSVGIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCL 203
Cdd:pfam02682 159 AGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPAL 200
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
6-212 4.16e-61

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 190.83  E-value: 4.16e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598   6 INEQTFMIYFNNQIDRQTFQKVQQVEQYIKDQQHdaIVEVIPSYRAIMVNVDItQQNVKQVIDDLQldQLDESqLSMTDS 85
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPG--FVECIPGMNNLTVFYDM-YEVYKHLPQRLS--SPWEE-VKDYEV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254340598  86 RTRVINLPVVYGGQYGQDIEEVANYNDITVDEVISKHTKNAYLIYMLGFMPGFPFLGGLDEALHTPRRTEPRTRIDAGSV 165
Cdd:TIGR00370  75 NRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSV 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2254340598 166 GIANNQTGLYPTESPGGWQIIGRTPIKVFDLNRNPMCLYEPGDYLKF 212
Cdd:TIGR00370 155 GIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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