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Conserved domains on  [gi|2225574766|ref|WP_245585066|]
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endonuclease domain-containing protein [Psychroserpens burtonensis]

Protein Classification

endonuclease domain-containing protein( domain architecture ID 10789861)

endonuclease domain-containing protein belonging to the PDDEXK superfamily; similar to Enterobacter cloacae YcjD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcjD COG2852
Very-short-patch-repair endonuclease [Replication, recombination and repair];
21-62 1.52e-16

Very-short-patch-repair endonuclease [Replication, recombination and repair];


:

Pssm-ID: 442100  Cd Length: 104  Bit Score: 67.20  E-value: 1.52e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2225574766  21 LRNNLTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYCR 62
Cdd:COG2852     1 LRRNDTPAERRLWQRLRNRQLRGLKFRRQVPIGGYIVDFYCP 42
 
Name Accession Description Interval E-value
YcjD COG2852
Very-short-patch-repair endonuclease [Replication, recombination and repair];
21-62 1.52e-16

Very-short-patch-repair endonuclease [Replication, recombination and repair];


Pssm-ID: 442100  Cd Length: 104  Bit Score: 67.20  E-value: 1.52e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2225574766  21 LRNNLTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYCR 62
Cdd:COG2852     1 LRRNDTPAERRLWQRLRNRQLRGLKFRRQVPIGGYIVDFYCP 42
Endonuclease_DUF559 cd01038
Putative endonuclease; Domain of unknown function 559 (DUF559) is a putative endonuclease of ...
 25-61 1.64e-12

Putative endonuclease; Domain of unknown function 559 (DUF559) is a putative endonuclease of unknown function, belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


Pssm-ID: 411708  Cd Length: 97  Bit Score: 56.44  E-value: 1.64e-12
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2225574766 25 LTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYC 61
Cdd:cd01038    1 QTEAERKLWQHLRNRQFLGLKFRRQKPIGFYIVDFYC 37
DUF559 pfam04480
Protein of unknown function (DUF559);
26-62 1.00e-09

Protein of unknown function (DUF559);


Pssm-ID: 398268  Cd Length: 95  Bit Score: 49.29  E-value: 1.00e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2225574766 26 TPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYCR 62
Cdd:pfam04480  1 TDAERKLWQLLRNRRLGGFKFRRQKPIGSYIVDFVCE 37
PRK09767 PRK09767
DUF559 domain-containing protein;
20-61 6.87e-07

DUF559 domain-containing protein;


Pssm-ID: 182067  Cd Length: 117  Bit Score: 42.71  E-value: 6.87e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2225574766  20 ELRNNLTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYC 61
Cdd:PRK09767   11 DLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFAC 52
 
Name Accession Description Interval E-value
YcjD COG2852
Very-short-patch-repair endonuclease [Replication, recombination and repair];
21-62 1.52e-16

Very-short-patch-repair endonuclease [Replication, recombination and repair];


Pssm-ID: 442100  Cd Length: 104  Bit Score: 67.20  E-value: 1.52e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2225574766  21 LRNNLTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYCR 62
Cdd:COG2852     1 LRRNDTPAERRLWQRLRNRQLRGLKFRRQVPIGGYIVDFYCP 42
Endonuclease_DUF559 cd01038
Putative endonuclease; Domain of unknown function 559 (DUF559) is a putative endonuclease of ...
 25-61 1.64e-12

Putative endonuclease; Domain of unknown function 559 (DUF559) is a putative endonuclease of unknown function, belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


Pssm-ID: 411708  Cd Length: 97  Bit Score: 56.44  E-value: 1.64e-12
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2225574766 25 LTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYC 61
Cdd:cd01038    1 QTEAERKLWQHLRNRQFLGLKFRRQKPIGFYIVDFYC 37
DUF559 pfam04480
Protein of unknown function (DUF559);
26-62 1.00e-09

Protein of unknown function (DUF559);


Pssm-ID: 398268  Cd Length: 95  Bit Score: 49.29  E-value: 1.00e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2225574766 26 TPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYCR 62
Cdd:pfam04480  1 TDAERKLWQLLRNRRLGGFKFRRQKPIGSYIVDFVCE 37
PRK09767 PRK09767
DUF559 domain-containing protein;
20-61 6.87e-07

DUF559 domain-containing protein;


Pssm-ID: 182067  Cd Length: 117  Bit Score: 42.71  E-value: 6.87e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2225574766  20 ELRNNLTPAEAFLWSHLKARQFENRRFNRQHSISNFIVDFYC 61
Cdd:PRK09767   11 DLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFAC 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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