|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
28-343 |
1.38e-84 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 258.50 E-value: 1.38e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 28 ATFLGGRRWRSLAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLV 107
Cdd:COG1172 8 ARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 108 LLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHR 187
Cdd:COG1172 88 LLLVALGLP---ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 188 FLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAV 267
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2224859992 268 IGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVALSLDRVRLK 343
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
72-336 |
1.00e-66 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 210.73 E-value: 1.00e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 72 AAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFM 151
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLP---IPLAILAALAVGALIGLLNGLLVAYLRIPPFI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 152 GTLGMWFIGLGLSVYMLGGTAIKLNDASIRD-LALHRFLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKL 230
Cdd:cd06579 78 VTLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 231 SGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANG 310
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*.
gi 2224859992 311 MILLGISPYIQQTVQGLMIIAAVALS 336
Cdd:cd06579 238 LNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
45-333 |
6.35e-46 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 158.73 E-value: 6.35e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 45 LIVLCILIAIA---NPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndygW 121
Cdd:PRK09512 22 LIALLVLIAIVstlSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNA----L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 122 WAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDL----ALHRFLGLPVAVWV 197
Cdd:PRK09512 98 VAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADLfgwfGIGRPLGIPTPVWI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 198 AFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAAV 277
Cdd:PRK09512 178 MAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAI 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2224859992 278 TAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAV 333
Cdd:PRK09512 258 AAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAV 313
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
76-335 |
1.23e-22 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 97.14 E-value: 1.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 76 LTLAMGLTFIILMGSIDLAVEgtlSVAAMVLVLLAANDGNGNDYGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLG 155
Cdd:NF040906 43 LILAIGMLLVIIAGHIDLSVG---SVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 156 MWFIGLGLSVYMLGGTAIKLNDASIRDLA------------LHRF---LGLPVAVWVAFG-------------------- 200
Cdd:NF040906 120 GMLVFRGLTLVVLGGQSIGPFPDGFQKISsgflpdlfggtgLHLLtllLGVLAAAALVWSqlrgrrrrikyglevepmal 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 201 ---------------AFLLAT--------------VIQYH-----TKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALA 246
Cdd:NF040906 200 fiaklvliaaailffTYLLASyrglpnvliilgvlILVYSfvtnrTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNM 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 247 GFFFGIAGVLAAAQLGQSHAVIGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQG 326
Cdd:NF040906 280 GVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKG 359
|
....*....
gi 2224859992 327 LMIIAAVAL 335
Cdd:NF040906 360 LVLLAAVAF 368
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
64-333 |
3.14e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 85.77 E-value: 3.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 64 NLVRLANSAAVPLTLAMGLTFII-LMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQ 142
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG---LWLALPVGILVGAAVGLLIGILT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 143 TMLRIPSFMGTLGMWFIGLGLSVYMLGGtAIKLNDASIRDLALHRFLGLPVAVWVAFGAFL------LATVIQYHTKLGR 216
Cdd:pfam02653 78 LRLKINEVIITLLLNLAALGLALFLVTG-ILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLalllvlALWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 217 HILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLG-QSHAVIGDGRLFAAVTAVVVGGTaltggeGGVV 295
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGvVPPSNFGVGLGLDAIAAVVLGGA------GSPI 230
|
250 260 270
....*....|....*....|....*....|....*....
gi 2224859992 296 NTLIGVLIVTVLANGMI-LLGISPYIQQTVQGLMIIAAV 333
Cdd:pfam02653 231 GVVIGSLIIGLVQSLGLgALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
28-343 |
1.38e-84 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 258.50 E-value: 1.38e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 28 ATFLGGRRWRSLAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLV 107
Cdd:COG1172 8 ARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 108 LLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHR 187
Cdd:COG1172 88 LLLVALGLP---ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 188 FLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAV 267
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2224859992 268 IGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVALSLDRVRLK 343
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
72-336 |
1.00e-66 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 210.73 E-value: 1.00e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 72 AAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFM 151
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLP---IPLAILAALAVGALIGLLNGLLVAYLRIPPFI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 152 GTLGMWFIGLGLSVYMLGGTAIKLNDASIRD-LALHRFLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKL 230
Cdd:cd06579 78 VTLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 231 SGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANG 310
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*.
gi 2224859992 311 MILLGISPYIQQTVQGLMIIAAVALS 336
Cdd:cd06579 238 LNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
17-335 |
8.61e-50 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 171.07 E-value: 8.61e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 17 TTPMTSFPGRIATFLGGRrWRSLAPLAVLIVLCILIAIAN-PNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAV 95
Cdd:COG4214 4 TAAPGGAVRSLRRLLGGD-LRSLGMIIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 96 EGTLSVAAMVLVLLAANDGngndYGWW-AVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIK 174
Cdd:COG4214 83 GSVSGFVGAVAAVLMVNWG----LPWWlAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 175 LNDASIRDLA----------------------------------------------------------------LHRFLG 190
Cdd:COG4214 159 PFDPTFQAIGngflpdilgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavylLNSYRG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 191 LPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGD 270
Cdd:COG4214 239 IPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2224859992 271 GRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVAL 335
Cdd:COG4214 319 GFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
45-333 |
6.35e-46 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 158.73 E-value: 6.35e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 45 LIVLCILIAIA---NPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndygW 121
Cdd:PRK09512 22 LIALLVLIAIVstlSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNA----L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 122 WAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDL----ALHRFLGLPVAVWV 197
Cdd:PRK09512 98 VAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADLfgwfGIGRPLGIPTPVWI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 198 AFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAAV 277
Cdd:PRK09512 178 MAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAI 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2224859992 278 TAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAV 333
Cdd:PRK09512 258 AAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAV 313
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
33-333 |
5.42e-43 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 151.37 E-value: 5.42e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 33 GRRWRSLAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVlvllAAN 112
Cdd:PRK11285 24 WRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVV----TAV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 113 DGNGNDYGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHRFLGLP 192
Cdd:PRK11285 100 VINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 193 VAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGR 272
Cdd:PRK11285 180 APIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGF 259
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2224859992 273 LFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAV 333
Cdd:PRK11285 260 ELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAV 320
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
43-335 |
9.56e-40 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 142.90 E-value: 9.56e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 43 AVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGN----D 118
Cdd:PRK09478 20 VVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANkvfpE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 119 YGWW----AVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGL-SVY--MLGGTAIKLNDASIRDLALHRF--- 188
Cdd:PRK09478 100 LATMpialVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGInSLYydFVGASPISGFDSGFSTFAQGFValg 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 189 -LGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAV 267
Cdd:PRK09478 180 sFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNN 259
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2224859992 268 IGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVAL 335
Cdd:PRK09478 260 LGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVAL 327
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
36-335 |
2.21e-34 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 128.35 E-value: 2.21e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 36 WRSLAPLAVLIVLCILIAIANPN-FIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANdg 114
Cdd:PRK09699 9 WDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 115 nGNDYGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHRFLGLPVA 194
Cdd:PRK09699 87 -GVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 195 VWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLF 274
Cdd:PRK09699 166 VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFET 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2224859992 275 AAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVAL 335
Cdd:PRK09699 246 YAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVAL 306
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
37-346 |
4.53e-27 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 109.05 E-value: 4.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 37 RSLAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAmVLVLLAANDGNG 116
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCA-VLVGMLLNAGYS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 117 NDYgwwAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHRFLGLPVAVW 196
Cdd:PRK15432 88 LPV---ACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGW 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 197 VAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAA 276
Cdd:PRK15432 165 LTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKA 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 277 VTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAVALSlDRVRLKIVK 346
Cdd:PRK15432 245 IAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD-GRLRCALER 313
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
39-303 |
4.10e-24 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 100.41 E-value: 4.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 39 LAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEgtlSVAAMVLVLLAANDGNGND 118
Cdd:PRK11618 9 MITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVG---SVIAFTGVFLAKLIGDYGW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 119 YGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGMWFIGLGLSvYMLGGTAIKLNDASIRDLALHRFL-----GLPV 193
Cdd:PRK11618 86 SPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVS-FLVSEESIPINHPFYDTLSSLAWKlpgggRLSA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 194 AVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRL 273
Cdd:PRK11618 165 MALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVE 244
|
250 260 270
....*....|....*....|....*....|
gi 2224859992 274 FAAVTAVVVGGTALTGGEGGVVNTLIGVLI 303
Cdd:PRK11618 245 LDAIAAVVIGGTLLTGGVGTVLGTLFGVLI 274
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
76-335 |
1.23e-22 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 97.14 E-value: 1.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 76 LTLAMGLTFIILMGSIDLAVEgtlSVAAMVLVLLAANDGNGNDYGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLG 155
Cdd:NF040906 43 LILAIGMLLVIIAGHIDLSVG---SVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 156 MWFIGLGLSVYMLGGTAIKLNDASIRDLA------------LHRF---LGLPVAVWVAFG-------------------- 200
Cdd:NF040906 120 GMLVFRGLTLVVLGGQSIGPFPDGFQKISsgflpdlfggtgLHLLtllLGVLAAAALVWSqlrgrrrrikyglevepmal 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 201 ---------------AFLLAT--------------VIQYH-----TKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALA 246
Cdd:NF040906 200 fiaklvliaaailffTYLLASyrglpnvliilgvlILVYSfvtnrTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNM 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 247 GFFFGIAGVLAAAQLGQSHAVIGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQG 326
Cdd:NF040906 280 GVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKG 359
|
....*....
gi 2224859992 327 LMIIAAVAL 335
Cdd:NF040906 360 LVLLAAVAF 368
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
64-333 |
3.14e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 85.77 E-value: 3.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 64 NLVRLANSAAVPLTLAMGLTFII-LMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQ 142
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG---LWLALPVGILVGAAVGLLIGILT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 143 TMLRIPSFMGTLGMWFIGLGLSVYMLGGtAIKLNDASIRDLALHRFLGLPVAVWVAFGAFL------LATVIQYHTKLGR 216
Cdd:pfam02653 78 LRLKINEVIITLLLNLAALGLALFLVTG-ILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLalllvlALWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 217 HILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLG-QSHAVIGDGRLFAAVTAVVVGGTaltggeGGVV 295
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGvVPPSNFGVGLGLDAIAAVVLGGA------GSPI 230
|
250 260 270
....*....|....*....|....*....|....*....
gi 2224859992 296 NTLIGVLIVTVLANGMI-LLGISPYIQQTVQGLMIIAAV 333
Cdd:pfam02653 231 GVVIGSLIIGLVQSLGLgALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
78-333 |
6.08e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 85.02 E-value: 6.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 78 LAMGLTFII-LMGSIDLAVEGTLSVAAMVLVLLAAndgnGNDYGWWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLGM 156
Cdd:cd06574 7 LALGVYIVFrILGFPDLTVDGSFPLGAAVAAILIV----AGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 157 WFIGLGLSVYMLGGTAIKLNDASIRD-----LALHRFLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLS 231
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRDTLLgllllFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 232 GVNVVRVRITAFALAGFFFGIAGVLAAAQLGQSHAVIGDGRLFAAVTAVVVGGTALTGGEG--GVVNTLIGVLIVTVLAN 309
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIkaSILGVIIGAILYRIALA 242
|
250 260
....*....|....*....|....
gi 2224859992 310 GMILLGISPYIQQTVQGLMIIAAV 333
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIVLVL 266
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
39-333 |
1.91e-16 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 79.10 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 39 LAPLAVLIVLCILIAIANPNFIELRNLVRLANSAAVPLTLAMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDgngnd 118
Cdd:PRK15038 9 LALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSG----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 119 ygwWAVLAAIAAGTAMGFVSGLVQTMLRIPSFMGTLgmwFIGLGlSVYMLGGTAIKLNDAS--------------IRDLA 184
Cdd:PRK15038 84 ---VPMPLAILLTLLLGALCGLINAGLIIYTGVNPL---VITLG-TLYLFGGSALLLSGMAgatgyegiggfpmaFTDFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 185 LHRFLGLPVAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQS 264
Cdd:PRK15038 157 NLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSA 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2224859992 265 HAVIGDGRLFAAVTAVVVGGTALTGGEGGVVNTLIGVLIVTVLANGMILLGISPYIQQTVQGLMIIAAV 333
Cdd:PRK15038 237 RSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
73-332 |
3.09e-14 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 70.93 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 73 AVPLTL-AMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGNDYGWW-AVLAAIAAGTAMGFVSGLVQTMLRIPSF 150
Cdd:cd06580 1 ATPLILaALGVAISFRAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPlGLLAAALAGALWALLPALLKAKLGVNEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 151 MGTLGMWFIGLGLSVYMLggtaiklndasirdlalhrflglpvavWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVAKL 230
Cdd:cd06580 81 ISGLMLNYIALGLTSYLL---------------------------LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARY 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 231 SGVNVVRVRITAFALAGFFFGIAG-VLAAAQLGQSHAVIGDGRLFAAVTAVVVGGtaltggeGGVVNTLIGVLIVTVLAN 309
Cdd:cd06580 134 AGINVKRVRLLAMLISGALAGLAGaYLVLGVQGRFTEGMSAGYGFIAIAVALLGR-------WNPLGILLAALLFGALEA 206
|
250 260
....*....|....*....|....*..
gi 2224859992 310 GMILL----GISPYIQQTVQGLMIIAA 332
Cdd:cd06580 207 GGIALqrsgGVPSELVQVLPGIIVLFV 233
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
72-284 |
5.57e-13 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 68.56 E-value: 5.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 72 AAVPLTL-AMGLTFIILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndygWWAVLAAIAAGTAMGFVSGLVQTMLRIPSF 150
Cdd:COG1079 17 AATPLLLaALGGLFSERAGVLNIGLEGMMLMGAFAGFAVAYLTGSP----WLGLLAAALAGALLALLHAFLTITLRANQI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 151 MGTLGMWFIGLGLSVY----MLGGTAIKLNDASIRDLAL----------HRFLGLPVAVWVAFGAFLLATVIQYHTKLGR 216
Cdd:COG1079 93 VSGLALNLLALGLTAFlgrlLFGQGGQTPSIPGLPPIPIpglsdipvlgPLLFGQSPLVYLALLLVPLVWWVLYRTRFGL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2224859992 217 HILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAG-VLAAAQLGQSHAVIGDGRLFAAVTAVVVGG 284
Cdd:COG1079 173 RLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGaYLSLGYVGSFTEGMTAGRGFIALAAVIFGR 241
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
121-333 |
7.00e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 67.85 E-value: 7.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 121 WWAVLAAIAAGTAMGFVSGLVQTMLRIPSF-MGTLGMWFI--GLGLSVYMLGGTAIKLNDASIRDLALHRFLGLPVAVWV 197
Cdd:cd06581 48 WLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIvrLLALNWSSLTGGSNGLSGIPPPLLGGLLLSSPLAFYYL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 198 AFGAFLLATVIQY---HTKLGRHILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQ-SHAVIGDGRL 273
Cdd:cd06581 128 VLAVLLLVLLLLRrlvRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFvSPESFGFALS 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 274 FAAVTAVVVGGTaltggeGGVVNTLIGVLIVTVLANgmILLGISPYIQQTVQGLMIIAAV 333
Cdd:cd06581 208 IELLLMVVLGGL------GSLLGPVLGAALLVLLPE--LLRSLGPGLRLLVFGLLLILVV 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
65-333 |
1.28e-12 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 67.03 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 65 LVRLANSAAVPLTLAMGLTFII-LMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLVQT 143
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHLGLP---FWLALLLAGLVAALLGLLIGLPAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 144 MLRIPSF-MGTLGMWFIGLGLSVYM---LGGTA--IKLNDASIRDLALHRFLGLPVAVWVAFGAFLLATVIQYHTKLGRH 217
Cdd:COG4177 81 RLRGDYLaIATLAFAEIVRLLALNLeslTGGADglSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 218 ILAIGGDEDVAKLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGQ-SHAVIGDGRLFAAVTAVVVGGTaltggeGGVVN 296
Cdd:COG4177 161 LRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFvSPESFSFLLSIEILLMVVLGGL------GSLLG 234
|
250 260 270
....*....|....*....|....*....|....*..
gi 2224859992 297 TLIGVLIVTVLANgmiLLGISPYIQQTVQGLMIIAAV 333
Cdd:COG4177 235 PVLGAVLLVLLPE---LLRSLPEYRLLIFGLLLILVV 268
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
78-284 |
2.37e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 57.44 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 78 LAMGLTFII-LMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFV--SGLVQTMLRIP--SFMG 152
Cdd:cd06582 11 IALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLP---FWLALLLALLVAALLGVLleRLVLRPLRGAPllTLLI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 153 TLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHRFLGLP----VAVWVAFGAFLLATVIQYHTKLGRHILAIGGDEDVA 228
Cdd:cd06582 88 TFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPpyrlFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2224859992 229 KLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGqSHAVIGDGRLFAAVTAVVVGG 284
Cdd:cd06582 168 RLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTMGLLLLLKAFAAVVLGG 222
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
78-314 |
1.05e-08 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 55.45 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 78 LAMGLTFI-ILMGSIDLAVEGTLSVAAMVLVLLAANDGNGndyGWWAVLAAIAAGTAMGFVSGLV-----QTMLRIPSFM 151
Cdd:COG0559 21 IALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLP---LWLALLLAVLVAALLGVLLERLvirplRGAPPLALLL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 152 GTLGMWFIGLGLSVYMLGGTAIKLNDASIRDLALHRFLGLPVAVWVAFGAFLLATVIQY---HTKLGRHILAIGGDEDVA 228
Cdd:COG0559 98 ATIGLSLVLQGLVLLIFGADPRSFPALLSGSVELGGVSIPAYRLFIIVVALVLLAALWLflrRTRLGLAMRAVAQNREAA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2224859992 229 KLSGVNVVRVRITAFALAGFFFGIAGVLAAAQLGqSHAVIGDGRLFAAVTAVVVGGT-----ALTGGEG-GVVNTLIGVL 302
Cdd:COG0559 178 RLMGINVDRVIALTFALGAALAGLAGVLLAPIYS-VSPTMGFLLGLKAFAAVVLGGLgsipgAVVGGLLlGLAESLGAAY 256
|
250
....*....|..
gi 2224859992 303 IVTVLANGMILL 314
Cdd:COG0559 257 LPSGYKDVVAFV 268
|
|
| |
