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Conserved domains on  [gi|2222155947|ref|WP_244496396|]
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MULTISPECIES: carbohydrate ABC transporter permease [Aureimonas]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-264 4.63e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 246.58  E-value: 4.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   2 QRAEPYLYSAPALILILAVMLVPLAIGVSYAFRDMRLLNPfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFV 81
Cdd:COG1175    16 RRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  82 LGLTLALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVALGImdAPTNILADPQLALVGPIIAN 161
Cdd:COG1175    95 LGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGL--EPINWLGDPSLALPAVIIVT 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 162 VWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVANFADLIVVMTGGGPADRT 241
Cdd:COG1175   173 VWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNST 252

                         250       260
                  ....*....|....*....|...
gi 2222155947 242 QIVASYIFTTAFRKLDFGYASAI 264
Cdd:COG1175   253 TTLVLYIYQTAFQQFDFGYASAI 275
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-264 4.63e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 246.58  E-value: 4.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   2 QRAEPYLYSAPALILILAVMLVPLAIGVSYAFRDMRLLNPfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFV 81
Cdd:COG1175    16 RRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  82 LGLTLALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVALGImdAPTNILADPQLALVGPIIAN 161
Cdd:COG1175    95 LGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGL--EPINWLGDPSLALPAVIIVT 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 162 VWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVANFADLIVVMTGGGPADRT 241
Cdd:COG1175   173 VWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNST 252

                         250       260
                  ....*....|....*....|...
gi 2222155947 242 QIVASYIFTTAFRKLDFGYASAI 264
Cdd:COG1175   253 TTLVLYIYQTAFQQFDFGYASAI 275
malF PRK10999
maltose ABC transporter permease MalF;
96-264 9.84e-26

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 106.20  E-value: 9.84e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  96 GRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVAL-GIMDAPTNilaDPQLALVGPIIANVWWGIPFFAITML 174
Cdd:PRK10999  319 GKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALfGIKPAWFS---DPTLAKTMILIVNTWLGYPYMMILCM 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 175 AALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMaiTILLRTVWVANFAD--LIVVMTGGGP--------ADRTQIV 244
Cdd:PRK10999  396 GLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPL--TPLMIASFAFNFNNfvLIQLLTNGGPdmigtttpAGYTDLL 473

                         170       180
                  ....*....|....*....|...
gi 2222155947 245 ASYIFTTAFR---KLDFGYASAI 264
Cdd:PRK10999  474 VSYTYRIAFEgggGQDFGLAAAI 496
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-214 6.67e-11

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 62.39  E-value: 6.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  11 APALILILAV---MLVPLAIGVSYAFRDMrllnpfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLA 87
Cdd:TIGR03262   5 LLLAGMILALllfLLLPLLALLTKSVYDS------DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  88 LLLNRP-FPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGIMdaptniladpqlALVGPIIANVWWGI 166
Cdd:TIGR03262  79 YALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ-GLLKGLLGGFSIY------------GFWGIVIGEVFYTF 145

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2222155947 167 PFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLP----------FLAPTMAIT 214
Cdd:TIGR03262 146 PHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPgakyglisaaFVVFTLVIT 203
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-264 4.13e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.98  E-value: 4.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  67 NTLVWTSVSVLLQFVLGLTLALLLNR-PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvgpiphwlvalgimdapTN 145
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-----------------LG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 146 ILADPQLALVGPIIANVWWgIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANF 225
Cdd:cd06261    66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL--AFARAL 142

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2222155947 226 ADLIVVMTGGGPADRTQIVASYIFTTAFRKLDFGYASAI 264
Cdd:cd06261   143 GEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAV 181
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 135-249 2.19e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 135 VALGIMDAPTNILADPQLALVGPIIANVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAIT 214
Cdd:pfam00528  33 FVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTG 112

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2222155947 215 ILLRTVWVANFADLIVVMTGGGPADRTQIVASYIF 249
Cdd:pfam00528 113 LALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGY 147
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-264 4.63e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 246.58  E-value: 4.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   2 QRAEPYLYSAPALILILAVMLVPLAIGVSYAFRDMRLLNPfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFV 81
Cdd:COG1175    16 RRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  82 LGLTLALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVALGImdAPTNILADPQLALVGPIIAN 161
Cdd:COG1175    95 LGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGL--EPINWLGDPSLALPAVIIVT 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 162 VWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVANFADLIVVMTGGGPADRT 241
Cdd:COG1175   173 VWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNST 252

                         250       260
                  ....*....|....*....|...
gi 2222155947 242 QIVASYIFTTAFRKLDFGYASAI 264
Cdd:COG1175   253 TTLVLYIYQTAFQQFDFGYASAI 275
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 7-264 1.46e-31

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 119.04  E-value: 1.46e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   7 YLYSAPALILILAVMLVPLAiGVSYAFRDMRLLNPFSGG-FVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLT 85
Cdd:COG4209    30 YLMLLPGLIYLLIFSYLPMY-GIVIAFKDYNPFKGIFGSpWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPII 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  86 LALLLN--RPFPGRGLAQALCFLP----WAVptfLSGLnWAWLFNPVVGPIPHWLVALGImdAPTNILADPQLALVGPII 159
Cdd:COG4209   109 LALLLNelRSKRFKKTVQTISYLPhflsWVV---VAGI-VYQFLSPDTGLVNQLLRALGG--EPINFLTEPKYFRPIYVF 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 160 ANVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWV--ANFaDLIVVMTGGGP 237
Cdd:COG4209   183 SGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNIlnVGF-EQIYLLYNPLN 261

                         250       260
                  ....*....|....*....|....*..
gi 2222155947 238 ADRTQIVASYIFTTAFRKLDFGYASAI 264
Cdd:COG4209   262 YSTSDVIDTYVYRIGLQNGDYSYATAV 288
malF PRK10999
maltose ABC transporter permease MalF;
96-264 9.84e-26

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 106.20  E-value: 9.84e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  96 GRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVAL-GIMDAPTNilaDPQLALVGPIIANVWWGIPFFAITML 174
Cdd:PRK10999  319 GKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALfGIKPAWFS---DPTLAKTMILIVNTWLGYPYMMILCM 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 175 AALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMaiTILLRTVWVANFAD--LIVVMTGGGP--------ADRTQIV 244
Cdd:PRK10999  396 GLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPL--TPLMIASFAFNFNNfvLIQLLTNGGPdmigtttpAGYTDLL 473

                         170       180
                  ....*....|....*....|...
gi 2222155947 245 ASYIFTTAFR---KLDFGYASAI 264
Cdd:PRK10999  474 VSYTYRIAFEgggGQDFGLAAAI 496
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
8-263 1.20e-22

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 94.51  E-value: 1.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   8 LYSAPALILILAVMLVPLAIGVSYAFRDmrlLNPF--SGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLT 85
Cdd:PRK10561    1 LLVAPQLIITVIFFIWPAGEALWYSLQS---VDPFgfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  86 LALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIPHWLVALGImdaPTNILADPQLALVGPIIANVWWG 165
Cdd:PRK10561   78 FAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGY---DWNHAQNSGQAMFLVVFASVWKQ 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 166 IPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVanFAD---LIVVMTGGGPADRTQ 242
Cdd:PRK10561  155 ISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYA--FFDtfpVIDAATSGGPVQATT 232

                         250       260
                  ....*....|....*....|.
gi 2222155947 243 IVASYIFTTAFRKLDFGYASA 263
Cdd:PRK10561  233 TLIYKIYREGFTGLDLSSSAA 253
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-264 1.08e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 92.13  E-value: 1.08e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   2 QRAEPYLYSAPALILILAVMLVPLAIGVSYAFRDMRLLNPFSGGFvGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFV 81
Cdd:COG1176     7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGF-TLENYARLFTDPLYLKVLLRTLWIALLTTLICLL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  82 LGLTLALLLNR-PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGIMDAPTNILADPqlalVGPIIA 160
Cdd:COG1176    86 LGYPIAYFLARaPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGLIDEPLRLLYTE----FAVVIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 161 NVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANFADLIVVMTGGGPadR 240
Cdd:COG1176   161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL--VFIPALGAFVTPALLGGG--K 236

                         250       260
                  ....*....|....*....|....
gi 2222155947 241 TQIVASYIFTTAFRKLDFGYASAI 264
Cdd:COG1176   237 VLMIGNLIYQQFLSALNWPLAAAL 260
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 14-241 1.88e-17

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 79.77  E-value: 1.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  14 LILILAVMLVPLAIGVSYAFRDMRLLNPFSGGFvGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLALLLNR- 92
Cdd:COG1177    13 LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGF-TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARy 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  93 PFPGRGLAQALCFLPWAVPTFLSGLnwAWLFnpvvgpiphWLVALGImdaptniladpQLALVGPIIANVWWGIPFFAIT 172
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGV--ALLL---------LFSALGL-----------SGGLWGLILAHVVFTLPFVVLV 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2222155947 173 MLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANFADLIVVMTGGGPADRT 241
Cdd:COG1177   150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL--AFTLSFDEFVITLFLAGPGVTT 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
6-264 1.39e-15

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 76.35  E-value: 1.39e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   6 PYLYSAPALILILAVMLVPLAIGVSYAFrdmrllnpfsggFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLT 85
Cdd:COG1178     9 PRLLLLLLALLLALLVLLPLLALLLRAF------------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  86 LALLLNR-PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGIMDAPtNILAdpqlaLVGPIIANVWW 164
Cdd:COG1178    77 LAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPP-DIYG-----LGGIILVLVLF 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 165 GIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANFADLIVVMTGGGpadRTQIV 244
Cdd:COG1178   150 NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALL--VFLLCLADFGTPLVLGG---GYTTL 224

                         250       260
                  ....*....|....*....|
gi 2222155947 245 ASYIFTTAFRKLDFGYASAI 264
Cdd:COG1178   225 TTAIYQAWLGDFDLGAAAAL 244
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 13-224 3.37e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 70.89  E-value: 3.37e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  13 ALILILAVMLVPLAIGVSYAFRDMRLLNPFSGGFV----GLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLAL 88
Cdd:COG0395    20 LLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLpsefTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAY 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  89 LLNR-PFPGRGLAQALcflpwavptFLSGLnwawLFNPVVGPIPHWLV--ALGIMDAptniladpqlaLVGPIIANVWWG 165
Cdd:COG0395   100 ALARfRFRGRKLLFLL---------ILATL----MIPGQVLLIPLYLLfrQLGLLNT-----------YWGLILPYLAFG 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2222155947 166 IPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVAN 224
Cdd:COG0395   156 LPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWN 214
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 13-264 1.59e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 69.01  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  13 ALILILAVMLVPLAIGVSYAFRdmrllnpfsggfVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLALLLNR 92
Cdd:COG0555    16 TLLYLSLIVLLPLAALVLKAAG------------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  93 -PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGImdaptNILADPqlalVGPIIANVWWGIPFFAI 171
Cdd:COG0555    84 yRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAPLGI-----KVAFTP----LGIVLAQTFVSLPFVVR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 172 TMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAP---TMAITILLRTvwVANFAdlIVVMTGGGPADRTQIVASYI 248
Cdd:COG0555   154 TVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPallTGFALAFARA--LGEFG--AVIFIAGNLPMKTEILPLLI 229

                         250
                  ....*....|....*.
gi 2222155947 249 FTtafRKLDFGYASAI 264
Cdd:COG0555   230 YL---KLEEGDYAGAT 242
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-214 6.67e-11

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 62.39  E-value: 6.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  11 APALILILAV---MLVPLAIGVSYAFRDMrllnpfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLA 87
Cdd:TIGR03262   5 LLLAGMILALllfLLLPLLALLTKSVYDS------DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  88 LLLNRP-FPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGIMdaptniladpqlALVGPIIANVWWGI 166
Cdd:TIGR03262  79 YALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ-GLLKGLLGGFSIY------------GFWGIVIGEVFYTF 145

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2222155947 167 PFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLP----------FLAPTMAIT 214
Cdd:TIGR03262 146 PHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPgakyglisaaFVVFTLVIT 203
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 48-217 3.50e-09

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 56.21  E-value: 3.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  48 GLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLALLLNR-PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNpV 126
Cdd:TIGR00969  45 GLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRyQFPGRKLLDALIDLPFALSPVVAGLTLALLYG-S 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 127 VGPIPHWLVALGIMDAptniladpqLALVGPIIANVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPF 206
Cdd:TIGR00969 124 NGWLGSWLASFGIQII---------FTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPS 194

                         170
                  ....*....|.
gi 2222155947 207 LAPTMAITILL 217
Cdd:TIGR00969 195 IRWALLYGVVL 205
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-264 4.13e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.98  E-value: 4.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  67 NTLVWTSVSVLLQFVLGLTLALLLNR-PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvgpiphwlvalgimdapTN 145
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-----------------LG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 146 ILADPQLALVGPIIANVWWgIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANF 225
Cdd:cd06261    66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL--AFARAL 142

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2222155947 226 ADLIVVMTGGGPADRTQIVASYIFTTAFRKLDFGYASAI 264
Cdd:cd06261   143 GEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAV 181
cysT CHL00187
sulfate transport protein; Provisional
 94-211 7.50e-09

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 55.02  E-value: 7.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  94 FPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVALGIMDAPTNIladpqlalvGPIIANVWWGIPFFAITM 173
Cdd:CHL00187   87 FPGKRLLDAAVDLPFALPTSVAGLTLATVYGDN-GWIGHLLSHLGIQIVFTKL---------GVLLAMIFVSFPFVVRTI 156

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2222155947 174 LAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTM 211
Cdd:CHL00187  157 QPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPAL 194
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-217 8.64e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 55.94  E-value: 8.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  13 ALILILAVMLVPLAIGVSYAFRdmrllnPFSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLALLLNR 92
Cdd:COG1178   294 CLLLVLLGLLLPLLALLLWSLT------KALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRR 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  93 -PFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVVGPIphwlvalgimdaptniLADPQLALVgpiIANVWWGIPFFAI 171
Cdd:COG1178   368 rRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL----------------LYGTLAILV---LAYVVRFLPFALR 428

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2222155947 172 TMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILL 217
Cdd:COG1178   429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
94-264 1.09e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 55.15  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  94 FPGRGLAQALCFLPWAVPTFLSGLNWAWLFNpVVGPIPHWLVALGIMDAPTNIladpqlalvGPIIANVWWGIPFFAITM 173
Cdd:PRK10971   90 FPGRTLLDALMDLPFALPTAVAGLTLASLFS-VNGWYGEWLAKFDIKVTYTWL---------GIAVAMAFTSIPFVVRTV 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 174 LAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPT-MAITILLRTVWVANFADLIVVmtGGGPADRTQIVASYIFTTa 252
Cdd:PRK10971  160 QPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPAlLAGVALSFTRSLGEFGAVIFI--AGNIAWKTEVTSLMIFVR- 236

                         170
                  ....*....|..
gi 2222155947 253 FRKLDFGYASAI 264
Cdd:PRK10971  237 LQEFDYPAASAI 248
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 14-217 1.18e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.77  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  14 LILILAVMLVPLAIGVSYAFRDMRLLNPFSGGF--VGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVLGLTLALLLN 91
Cdd:COG3833    22 LIILAIIALFPILWVVSASFNPGGSLYSSSLIPenFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFS 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  92 R-PFPGR--GLAQALCFLpwAVPTFLSglnwawlfnpvvgpiphwLVALGIMDAPTNILaDPQLALV-----GPIIANVW 163
Cdd:COG3833   102 RfRFKGRkaGLLALLLLQ--MFPAFLA------------------LVALYLLLSALGLL-NTLLGLIlvylgGAIPFNTW 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2222155947 164 wgipffaiTMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILL 217
Cdd:COG3833   161 --------LMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALL 206
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 3-264 9.21e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 49.23  E-value: 9.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   3 RAEPYLYSAPALILILAVMLVPLAIGVSYAFRDmrllnpfsGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFVL 82
Cdd:PRK15050   21 RLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTG--------EHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  83 -GLTLALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPVvGPIPHWLVAL-GIMDAPTNILADPQlalvGPIIA 160
Cdd:PRK15050   93 gVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSA-GSVNIALQRLfGLEAPPLDFLYSPG----GVILA 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 161 NVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPT-MAITILLRTVWVANFAdlIVVMTGggpAD 239
Cdd:PRK15050  168 EITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPAlAAGGSLCLLLTLNEFG--IVLFTG---AK 242

                         250       260
                  ....*....|....*....|....*
gi 2222155947 240 RTQIVASYIFTTAFRKLDFGYASAI 264
Cdd:PRK15050  243 DVVTLPVLIYSKAIVDFDYPTACAI 267
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 135-249 2.19e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 135 VALGIMDAPTNILADPQLALVGPIIANVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAIT 214
Cdd:pfam00528  33 FVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTG 112

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2222155947 215 ILLRTVWVANFADLIVVMTGGGPADRTQIVASYIF 249
Cdd:pfam00528 113 LALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGY 147
PhnU TIGR03226
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ...
 2-264 1.34e-05

2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).


Pssm-ID: 274484  Cd Length: 288  Bit Score: 45.71  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947   2 QRAEPYLYSAPALILILAVMLVPLAIGVSYAFRDmrllnpfSGGFVGLKHFNTLWTDRNFWLALNNTLVWTSVSVLLQFV 81
Cdd:TIGR03226  14 ENLAPALILALAALVLAPLFFYPLALIAELALLD-------AHGNLSLAAFRQFFASHDFIDALGNTLQIAFAAAGGALV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  82 L-GLTLALLLNRPFPGRGLAQALCFLPWAVPTFLSGLNWAWLFNPvVGPIPHWLVALGIMDAPTnilADPQLALVGPIIA 160
Cdd:TIGR03226  87 LgSLLAAILFFIPFPGAQLVGRFIDLFIAFPSFLIAFAFIFIYGS-AGLLNGALMAAFAFDAPP---LDFLFGAGGVILA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947 161 NVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLRTVWVANFADLIVVMTgggpADR 240
Cdd:TIGR03226 163 EITFFTPFVMRPLLAGFAQIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAGGILCFLLTLNEFGILLFIG----AAG 238

                         250       260
                  ....*....|....*....|....
gi 2222155947 241 TQIVASYIFTTAFRKLDFGYASAI 264
Cdd:TIGR03226 239 LITLPMAIYSKAILDIDLPAAAAG 262
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 134-209 2.63e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 38.52  E-value: 2.63e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2222155947 134 LVALGIMDAPTNILADPqlalVGPIIANVWWGIPFFAITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAP 209
Cdd:PRK09497  134 LLWLGVIDTPIRIMFTE----SAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMP 205
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 92-247 3.55e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 38.66  E-value: 3.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2222155947  92 RPFPGRGLAQALCFLPWAVPTFLS--GLNWAWLFNpvvGPIPHWLVALGImDAPTNIladpqLALVGPIIANVWWGIPFF 169
Cdd:PRK09433   74 RRFPGRGLLLRLCAMTLVLPVLVAvfGLLSVYGRS---GWLAQLLQALGL-EWPFSI-----YGLQGILLAHVFFNLPLA 144

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2222155947 170 AITMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILLrtVWVANFADLIVVMT-GGGPADRTQIVASY 247
Cdd:PRK09433  145 TRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAAL--IFMLCFTSFATVLTlGGGPKATTIELAIY 221
malG PRK10998
maltose ABC transporter permease MalG;
152-217 6.32e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 6.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2222155947 152 LALVGPIIANVWwgipffaiTMLAALQSIPRDIYEAASIDGANPVQQFFSITLPFLAPTMAITILL 217
Cdd:PRK10998  164 FAYLGGIALHVW--------TIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFIL 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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