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Conserved domains on  [gi|2221266685|ref|WP_244272770|]
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nitroreductase family protein [Lactobacillus jensenii]

Protein Classification

nitroreductase family protein( domain architecture ID 104)

nitroreductase family protein may catalyze the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles, requiring NAD(P)H as an electron donor in an obligatory two-electron transfer and using FMN as cofactor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Nitro_FMN_reductase super family cl00514
nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or ...
6-61 1.95e-16

nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.


The actual alignment was detected with superfamily member cd02136:

Pssm-ID: 444950 [Multi-domain]  Cd Length: 152  Bit Score: 70.31  E-value: 1.95e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSLAKLKEL 61
Cdd:cd02136     1 AIKSRRSVRAFKDKPVPKETIEKILEAARRAPSGKNTQPWRVYVVTGKARERLKKA 56
 
Name Accession Description Interval E-value
PnbA_NfnB-like cd02136
nitroreductase similar to Mycobacterium smegmatis NfnB; Members of this family utilize FMN as ...
6-61 1.95e-16

nitroreductase similar to Mycobacterium smegmatis NfnB; Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.


Pssm-ID: 380313 [Multi-domain]  Cd Length: 152  Bit Score: 70.31  E-value: 1.95e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSLAKLKEL 61
Cdd:cd02136     1 AIKSRRSVRAFKDKPVPKETIEKILEAARRAPSGKNTQPWRVYVVTGKARERLKKA 56
NfnB COG0778
Nitroreductase [Energy production and conversion]; Nitroreductase is part of the Pathway ...
5-61 4.17e-13

Nitroreductase [Energy production and conversion]; Nitroreductase is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 440541 [Multi-domain]  Cd Length: 163  Bit Score: 62.18  E-value: 4.17e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSL-AKLKEL 61
Cdd:COG0778     3 ELLLTRRSVRKFTDKPVSDEELEELLEAARLAPSAGNLQPWRFVVVRDPELrERLAEA 60
Nitroreductase pfam00881
Nitroreductase family; The nitroreductase family comprises a group of FMN- or FAD-dependent ...
7-93 1.39e-09

Nitroreductase family; The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.


Pssm-ID: 425926 [Multi-domain]  Cd Length: 168  Bit Score: 52.78  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2221266685   7 IEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLV-RGKSLAKLKElHLKNSKTDRSAAPE-WPTMHRVNW 84
Cdd:pfam00881   1 IRQRRSVRKFDPEPVPKEVLEEILEAARRAPSAGNLQPWRFYVVtDGELRYRLAE-AALELLLVEPAAALlLLLRRDANL 79

                  ....*....
gi 2221266685  85 DEFPRDNMA 93
Cdd:pfam00881  80 KLLLQDFLR 88
BluB TIGR02476
5,6-dimethylbenzimidazole synthase; A previously published hypothesis that BluB, involved in ...
6-51 7.43e-03

5,6-dimethylbenzimidazole synthase; A previously published hypothesis that BluB, involved in cobalamin biosynthesis, is EC 1.16.8.1 (cob(II)yrinic acid a,c-diamide reductase) is now contradicted by newer work ascribing a role in 5,6-dimethylbenzimidazole (DMB) biosynthesis. The BluB protein is related to the nitroreductase family (pfam0881). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 162875  Cd Length: 205  Bit Score: 34.72  E-value: 7.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVR 51
Cdd:TIGR02476  12 LIRERRDVRHFRSDPVPEAVLERLLDAAHHAPSVGFSQPWRFVRVE 57
PRK11053 PRK11053
oxygen-insensitive NAD(P)H nitroreductase;
1-45 7.94e-03

oxygen-insensitive NAD(P)H nitroreductase;


Pssm-ID: 182929 [Multi-domain]  Cd Length: 217  Bit Score: 34.56  E-value: 7.94e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2221266685   1 METKQAIEDRHSVRVF-TNKDVEVNKLKGLVKLAQKAPSWVDSQPW 45
Cdd:PRK11053    1 MDIVSVAKKRYTTKAFdPSKKLPAEQIEQIKTLLRFSPSSVNSQPW 46
 
Name Accession Description Interval E-value
PnbA_NfnB-like cd02136
nitroreductase similar to Mycobacterium smegmatis NfnB; Members of this family utilize FMN as ...
6-61 1.95e-16

nitroreductase similar to Mycobacterium smegmatis NfnB; Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.


Pssm-ID: 380313 [Multi-domain]  Cd Length: 152  Bit Score: 70.31  E-value: 1.95e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSLAKLKEL 61
Cdd:cd02136     1 AIKSRRSVRAFKDKPVPKETIEKILEAARRAPSGKNTQPWRVYVVTGKARERLKKA 56
NfnB COG0778
Nitroreductase [Energy production and conversion]; Nitroreductase is part of the Pathway ...
5-61 4.17e-13

Nitroreductase [Energy production and conversion]; Nitroreductase is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 440541 [Multi-domain]  Cd Length: 163  Bit Score: 62.18  E-value: 4.17e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSL-AKLKEL 61
Cdd:COG0778     3 ELLLTRRSVRKFTDKPVSDEELEELLEAARLAPSAGNLQPWRFVVVRDPELrERLAEA 60
Nitro_FMN_reductase cd02062
nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or ...
7-64 4.67e-13

nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.


Pssm-ID: 380311 [Multi-domain]  Cd Length: 139  Bit Score: 61.54  E-value: 4.67e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2221266685   7 IEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKslAKLKELHLK 64
Cdd:cd02062     1 IKTRRSIRKFTDKPVPEEKLRKILEAARLAPSAGNLQPWRFIVVRDR--EKKEKLAKL 56
nitroreductase cd20608
nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or ...
5-70 5.14e-11

nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.


Pssm-ID: 380329 [Multi-domain]  Cd Length: 145  Bit Score: 56.19  E-value: 5.14e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSlaKLKELHLKNSKTDR 70
Cdd:cd20608     2 EAIKTRRSVRRFSDKPVEEEKLEKILEAARLAPSWANKQCWRFIVVTDKE--TLSELAKKESPSNG 65
nitroreductase cd20609
nitroreductase family protein; A subfamily of the nitroreductase family containing ...
4-61 3.35e-10

nitroreductase family protein; A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.


Pssm-ID: 380330 [Multi-domain]  Cd Length: 145  Bit Score: 53.93  E-value: 3.35e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2221266685   4 KQAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGK-SLAKLKEL 61
Cdd:cd20609     3 LELAKKRYSVRKFSDKPVEKEKLDKILEAGRLAPTAVNYQPQRILVVRSEeALEKLAKA 61
Nitroreductase pfam00881
Nitroreductase family; The nitroreductase family comprises a group of FMN- or FAD-dependent ...
7-93 1.39e-09

Nitroreductase family; The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.


Pssm-ID: 425926 [Multi-domain]  Cd Length: 168  Bit Score: 52.78  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2221266685   7 IEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLV-RGKSLAKLKElHLKNSKTDRSAAPE-WPTMHRVNW 84
Cdd:pfam00881   1 IRQRRSVRKFDPEPVPKEVLEEILEAARRAPSAGNLQPWRFYVVtDGELRYRLAE-AALELLLVEPAAALlLLLRRDANL 79

                  ....*....
gi 2221266685  85 DEFPRDNMA 93
Cdd:pfam00881  80 KLLLQDFLR 88
nitroreductase cd02139
nitroreductase family protein; A subfamily of the nitroreductase family containing ...
5-60 2.28e-09

nitroreductase family protein; A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.


Pssm-ID: 380316 [Multi-domain]  Cd Length: 165  Bit Score: 52.09  E-value: 2.28e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKslaKLKE 60
Cdd:cd02139     3 EAIKKRRSIRKYKPTPVEEEKLLRILEAARLAPSAKNRQPWRFIVVKDK---ELKE 55
nitroreductase cd02150
nitroreductase family protein; A subfamily of the nitroreductase family containing ...
7-62 2.33e-09

nitroreductase family protein; A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.


Pssm-ID: 380325 [Multi-domain]  Cd Length: 156  Bit Score: 51.83  E-value: 2.33e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2221266685   7 IEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKS-LAKLKELH 62
Cdd:cd02150     1 ILTRRSIRKYTDKPVEEEDIEKLLRAAMAAPSAGNQQPWHFIVVTDREkLDKIAEAH 57
MhqN-like cd02137
nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN; A diverse subfamily ...
4-73 1.06e-08

nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN; A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.


Pssm-ID: 380314 [Multi-domain]  Cd Length: 147  Bit Score: 49.93  E-value: 1.06e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2221266685   4 KQAIEDRHSVRVFT-NKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGK-SLAKLKELHLKNSKTDRSAA 73
Cdd:cd02137     1 LEVIKSRRSVRNFDpDHKIPKEELKEILELATLAPSSFNLQPWRFVVVRDPeLKAKLAEAAYNQPQVTTASA 72
nitroreductase cd02151
nitroreductase family protein; A subfamily of the nitroreductase family containing ...
5-61 1.44e-08

nitroreductase family protein; A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers..


Pssm-ID: 380326 [Multi-domain]  Cd Length: 157  Bit Score: 49.84  E-value: 1.44e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKslAKLKEL 61
Cdd:cd02151     1 ELLKKRRSIRKYTDEPIEEEKLEEILEAALLAPSSRNSRPVEFIVVDDK--ETLKKL 55
nitroreductase cd20610
nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or ...
7-62 1.57e-06

nitroreductase family protein; Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.


Pssm-ID: 380331 [Multi-domain]  Cd Length: 167  Bit Score: 44.58  E-value: 1.57e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2221266685   7 IEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKslAKLKELH 62
Cdd:cd20610     1 IKKRRSIRKFKPDPVPKEDIEKILEAANWAPSGMNRQNWEFVVVKGG--EKIEKIG 54
nitroreductase cd03370
uncharacterized nitroreductase family proteins; Nitroreductase family containing Thermus ...
3-51 5.99e-06

uncharacterized nitroreductase family proteins; Nitroreductase family containing Thermus thermophilus NADH oxidase and other, uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.


Pssm-ID: 380327 [Multi-domain]  Cd Length: 191  Bit Score: 43.46  E-value: 5.99e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2221266685   3 TKQAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVR 51
Cdd:cd03370     1 VKEAIESRRSIRKYTQEPVPDEDLREILRLAGLAPSAWNIQPWRFVVVR 49
TdsD-like cd02138
nitroreductase similar to Burkholderia pseudomallei TdsD; A subfamily of the nitroreductase ...
6-51 1.07e-04

nitroreductase similar to Burkholderia pseudomallei TdsD; A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.


Pssm-ID: 380315 [Multi-domain]  Cd Length: 174  Bit Score: 39.45  E-value: 1.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVR 51
Cdd:cd02138     1 LIAERWSPRAFSPEPISEEDLLSLFEAARWAPSCFNEQPWRFVVAR 46
NfsA-like cd02146
nitroreductase similar to Escherichia coli NfsA; This family contains NADPH-dependent flavin ...
3-62 1.61e-04

nitroreductase similar to Escherichia coli NfsA; This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.


Pssm-ID: 380322 [Multi-domain]  Cd Length: 229  Bit Score: 39.53  E-value: 1.61e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2221266685   3 TKQAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSL-AKLKELH 62
Cdd:cd02146     1 TIETILNHRSVRKFTDEPLTDETLETLIAAAQSASTSSNLQAYSVIVVTDPELrEKLAELA 61
NfsB-like cd02149
nitroreductase similar to Escherichia coli NfsB; NAD(P)H:FMN oxidoreductase family. This ...
4-65 4.53e-04

nitroreductase similar to Escherichia coli NfsB; NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.


Pssm-ID: 380324 [Multi-domain]  Cd Length: 156  Bit Score: 37.62  E-value: 4.53e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2221266685   4 KQAIEDRHSVRVF-TNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGKSL-AKLKELHLKN 65
Cdd:cd02149     3 LELLNFRYATKKFdPNKKISDEDLETILEALRLSPSSFGLEPWKFLVVENPELkAKLAPAAWFN 66
iodotyrosine_dehalogenase cd02144
iodotyrosine dehalogenase; Iodotyrosine dehalogenase catalyzes the removal of iodine from the ...
10-45 1.52e-03

iodotyrosine dehalogenase; Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.


Pssm-ID: 380320  Cd Length: 192  Bit Score: 36.36  E-value: 1.52e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2221266685  10 RHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPW 45
Cdd:cd02144     8 RRSVRDFSSEPVPREVIENAIRTAGTAPSGANTQPW 43
BluB cd02145
5,6-dimethylbenzimidazole synthase; BluB catalyzes the O2-dependent conversion of FMNH2 to 5, ...
5-62 1.90e-03

5,6-dimethylbenzimidazole synthase; BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.


Pssm-ID: 380321  Cd Length: 196  Bit Score: 36.18  E-value: 1.90e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2221266685   5 QAIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRgkSLAKLKELH 62
Cdd:cd02145     2 RVIRWRRDVRHFRPDPVPEEVLERLLQAAHLAPSVGLMQPWRFVRVR--SAATRKAVH 57
RutE-like cd02148
nitroreductase similar to Escherichia coli RutE; A subfamily of the nitroreductase family ...
9-99 4.37e-03

nitroreductase similar to Escherichia coli RutE; A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. RutE is involved in the utilization of uracil as the sole nitrogen source; it appears to have the same function as YdfG, which reduces malonic semialdehyde to 3-hydroxypropionic acid.


Pssm-ID: 380323 [Multi-domain]  Cd Length: 186  Bit Score: 35.31  E-value: 4.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2221266685   9 DRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVRGK-SLAKLKElHLKNSKTDRSAAPewPTMHRVNWD-E 86
Cdd:cd02148     8 EARTHNAWEDKPVSDEELRAIYDLAKWGPTAANCSPARIVFVRSAeAKERLVP-HLSEGNREKTMAA--PVTAILAYDtE 84
                          90
                  ....*....|...
gi 2221266685  87 FPrDNMAKLNLHR 99
Cdd:cd02148    85 FY-EHLPRLFPHG 96
nitroreductase_FeS-like cd02143
nitroreductases with an N-terminal iron-sulfur cluster-binding domain; Members of this family ...
10-50 6.17e-03

nitroreductases with an N-terminal iron-sulfur cluster-binding domain; Members of this family utilize FMN as a cofactor. This family may be involved in the reduction of flavin or nitroaromatic compounds via an obligatory two-electron transfer. Nitroreductase is homodimer. Each subunit contains one FMN molecule.


Pssm-ID: 380319 [Multi-domain]  Cd Length: 187  Bit Score: 34.76  E-value: 6.17e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2221266685  10 RHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKiYLV 50
Cdd:cd02143     5 RRSIRRYKDKPVPRETLEKLLDIARYAPTGHNSQPVH-WLV 44
BluB TIGR02476
5,6-dimethylbenzimidazole synthase; A previously published hypothesis that BluB, involved in ...
6-51 7.43e-03

5,6-dimethylbenzimidazole synthase; A previously published hypothesis that BluB, involved in cobalamin biosynthesis, is EC 1.16.8.1 (cob(II)yrinic acid a,c-diamide reductase) is now contradicted by newer work ascribing a role in 5,6-dimethylbenzimidazole (DMB) biosynthesis. The BluB protein is related to the nitroreductase family (pfam0881). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 162875  Cd Length: 205  Bit Score: 34.72  E-value: 7.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2221266685   6 AIEDRHSVRVFTNKDVEVNKLKGLVKLAQKAPSWVDSQPWKIYLVR 51
Cdd:TIGR02476  12 LIRERRDVRHFRSDPVPEAVLERLLDAAHHAPSVGFSQPWRFVRVE 57
PRK11053 PRK11053
oxygen-insensitive NAD(P)H nitroreductase;
1-45 7.94e-03

oxygen-insensitive NAD(P)H nitroreductase;


Pssm-ID: 182929 [Multi-domain]  Cd Length: 217  Bit Score: 34.56  E-value: 7.94e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2221266685   1 METKQAIEDRHSVRVF-TNKDVEVNKLKGLVKLAQKAPSWVDSQPW 45
Cdd:PRK11053    1 MDIVSVAKKRYTTKAFdPSKKLPAEQIEQIKTLLRFSPSSVNSQPW 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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