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Conserved domains on  [gi|2219780590|ref|WP_243814646|]
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phage tail protein, partial [Klebsiella variicola]

Protein Classification

DUF3751 domain-containing protein; phage tail protein( domain architecture ID 11474914)

DUF3751 domain-containing protein; phage tail protein; phage tail protein is part of a multi-protein structure that mediates the attachment, digestion and penetration of the cell wall and genome ejection; phage tail protein is part of a multi-protein structure that mediates the attachment, digestion and penetration of the cell wall and genome ejection; similar to Escherichia virus P1 major tail fiber protein S

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5301 COG5301
Phage-related tail fiber protein [Mobilome: prophages, transposons];
1-97 4.25e-41

Phage-related tail fiber protein [Mobilome: prophages, transposons];


:

Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 135.57  E-value: 4.25e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219780590   1 MSKIFKSLITVAGREKIAEAIVNGDKIIFSQMSVGDGGGSATIPDDEQTALVNERFRSQLNSLKLSDT-ENIIIAEMIIP 79
Cdd:COG5301     1 MTQKYYTLLTDIGAAKLANATALGTKLNLTQMAVGDGGGSLPTPDPSQTALVNEVRRAPLNSLSVDPKnPNQIIAEQVIP 80

                          90
                  ....*....|....*...
gi 2219780590  80 PEVGGFTIREAALFDDAG 97
Cdd:COG5301    81 EEVGGFWIREIGLFDDDG 98
 
Name Accession Description Interval E-value
COG5301 COG5301
Phage-related tail fiber protein [Mobilome: prophages, transposons];
1-97 4.25e-41

Phage-related tail fiber protein [Mobilome: prophages, transposons];


Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 135.57  E-value: 4.25e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219780590   1 MSKIFKSLITVAGREKIAEAIVNGDKIIFSQMSVGDGGGSATIPDDEQTALVNERFRSQLNSLKLSDT-ENIIIAEMIIP 79
Cdd:COG5301     1 MTQKYYTLLTDIGAAKLANATALGTKLNLTQMAVGDGGGSLPTPDPSQTALVNEVRRAPLNSLSVDPKnPNQIIAEQVIP 80

                          90
                  ....*....|....*...
gi 2219780590  80 PEVGGFTIREAALFDDAG 97
Cdd:COG5301    81 EEVGGFWIREIGLFDDDG 98
DUF3751 pfam12571
Phage tail-collar fibre protein; This domain family is found in bacteria and viruses, and is ...
 1-98 2.66e-35

Phage tail-collar fibre protein; This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.


Pssm-ID: 463631  Cd Length: 149  Bit Score: 117.31  E-value: 2.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219780590   1 MSKIFkSLITVAGREKIAEAIVNGDKIIFSQMSVGDGGGSATIPDDEQTALVNERFRSQLNSLKLS-DTENIIIAEMIIP 79
Cdd:pfam12571   1 MATKY-TLLTNAGEAKLANAQALGTPLVITKMAVGDGGGLLPTPTESQTALVNEVWRGAINQLGVDpVNPNQVVAELVIP 79

                          90
                  ....*....|....*....
gi 2219780590  80 PEVGGFTIREAALFDDAGV 98
Cdd:pfam12571  80 TTVGGFWIREIGLFDADGT 98
 
Name Accession Description Interval E-value
COG5301 COG5301
Phage-related tail fiber protein [Mobilome: prophages, transposons];
1-97 4.25e-41

Phage-related tail fiber protein [Mobilome: prophages, transposons];


Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 135.57  E-value: 4.25e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219780590   1 MSKIFKSLITVAGREKIAEAIVNGDKIIFSQMSVGDGGGSATIPDDEQTALVNERFRSQLNSLKLSDT-ENIIIAEMIIP 79
Cdd:COG5301     1 MTQKYYTLLTDIGAAKLANATALGTKLNLTQMAVGDGGGSLPTPDPSQTALVNEVRRAPLNSLSVDPKnPNQIIAEQVIP 80

                          90
                  ....*....|....*...
gi 2219780590  80 PEVGGFTIREAALFDDAG 97
Cdd:COG5301    81 EEVGGFWIREIGLFDDDG 98
DUF3751 pfam12571
Phage tail-collar fibre protein; This domain family is found in bacteria and viruses, and is ...
 1-98 2.66e-35

Phage tail-collar fibre protein; This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.


Pssm-ID: 463631  Cd Length: 149  Bit Score: 117.31  E-value: 2.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219780590   1 MSKIFkSLITVAGREKIAEAIVNGDKIIFSQMSVGDGGGSATIPDDEQTALVNERFRSQLNSLKLS-DTENIIIAEMIIP 79
Cdd:pfam12571   1 MATKY-TLLTNAGEAKLANAQALGTPLVITKMAVGDGGGLLPTPTESQTALVNEVWRGAINQLGVDpVNPNQVVAELVIP 79

                          90
                  ....*....|....*....
gi 2219780590  80 PEVGGFTIREAALFDDAGV 98
Cdd:pfam12571  80 TTVGGFWIREIGLFDADGT 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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