|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
246-547 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 540.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 246 FFARLKRSLIKTKQNLGSGFISLFRG-KKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAEALYGLLKE 324
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGkKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 325 EMGEILAKVDEPLKVEGKTPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIA 404
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 405 QHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKL 484
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2170279101 485 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARE 547
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
237-548 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 536.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 237 EQERPTKEGFFARLKRSLIKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAE 316
Cdd:PRK10416 7 KKKKEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 317 ALYGLLKEEMGEILAKVDEPLKVEGKTPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGD 396
Cdd:PRK10416 87 ELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 397 RNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQ 476
Cdd:PRK10416 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2170279101 477 NAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARED 548
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
273-544 |
7.57e-138 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 400.09 E-value: 7.57e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 273 KIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAEALYGLLKEEMGEILAK-----VDEPLKVEGKTPFVI 347
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllknTDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 348 LMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKARNV 427
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 428 DVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGV 507
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2170279101 508 IFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALF 544
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
345-543 |
6.84e-120 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 351.49 E-value: 6.84e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
344-544 |
1.96e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 317.04 E-value: 1.96e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 344 PFVILMVGVNGVGKTTTIGKLARQFQQEG-KSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAA 422
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 423 KARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGT 502
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2170279101 503 AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALF 544
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
345-543 |
3.43e-102 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 306.01 E-value: 3.43e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
18-184 |
1.09e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 70.84 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 18 KEQASEQEPEQKVAEEQPVAEEV-VEQIIEAEQPQAADETAQSEEIKPEAQTEIQPEVLPEAEPvvlekhEEPEAFAEEI 96
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVET------THPEVIAAPV 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 97 VEVTEkLVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVA-PEAVQVESLEEWQPEQEPVVAETAVKTVVEP 175
Cdd:PRK10811 925 TEQPQ-VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003
|
....*....
gi 2170279101 176 EEIAVAPVE 184
Cdd:PRK10811 1004 AQVPEATVE 1012
|
|
| MamJ |
NF040987 |
magnetosome protein MamJ; Magnetosomes are special lipid-bound organelles that comprise ... |
17-181 |
7.12e-06 |
|
magnetosome protein MamJ; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. It has been reported that proteins of this family were involved in the assembly of magnetosome chains.
Pssm-ID: 468917 [Multi-domain] Cd Length: 412 Bit Score: 48.53 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 17 QKEQASEQEPEQKVAEEQPVAEEVVEQIIEAEQPQAADETAQSE-EIKPEAQTEIQPEVLPEAEPV-------VLEKHEE 88
Cdd:NF040987 145 QPVQSAELEASIEVEPALPPAEPVAEVEDVFVDVVAEAEPEPEAvVIEAEGAEAEPEDALPEPEPVeevieidAAEIEPE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 89 PEAFAEEIVEVTEklVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVAPEAVQVESLEEWQPEQEPVVAETA 168
Cdd:NF040987 225 PEAVHDNEMTEAE--GDPEMIPVEVEAEIEPEPELIDAVVELVTEFEVSEAEAVVSAEAIAAPAPATDSPLAELSMAAAA 302
|
170
....*....|...
gi 2170279101 169 VkTVVEPEEIAVA 181
Cdd:NF040987 303 M-TLISAPSVAVA 314
|
|
| DUF3664 |
pfam12406 |
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ... |
25-91 |
9.75e-03 |
|
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length.
Pssm-ID: 289191 [Multi-domain] Cd Length: 99 Bit Score: 36.01 E-value: 9.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2170279101 25 EPEQKVAEEQPVAEEVVEQIIEAEQPqaADETAQSEEIKPEAQTEIQPEVLPEAEP-----VVLEKHEEPEA 91
Cdd:pfam12406 19 DPDQLIDQIEPSEQPAQQEPIEPQQP--TQPSTEPEELQPETVTVEVPEPVTSEEPkesdqTEEQKHEEPEA 88
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
246-547 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 540.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 246 FFARLKRSLIKTKQNLGSGFISLFRG-KKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAEALYGLLKE 324
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGkKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 325 EMGEILAKVDEPLKVEGKTPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIA 404
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 405 QHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKL 484
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2170279101 485 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARE 547
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
237-548 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 536.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 237 EQERPTKEGFFARLKRSLIKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAE 316
Cdd:PRK10416 7 KKKKEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 317 ALYGLLKEEMGEILAKVDEPLKVEGKTPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGD 396
Cdd:PRK10416 87 ELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 397 RNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQ 476
Cdd:PRK10416 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2170279101 477 NAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARED 548
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
273-544 |
7.57e-138 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 400.09 E-value: 7.57e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 273 KIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKDLRDAEALYGLLKEEMGEILAK-----VDEPLKVEGKTPFVI 347
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllknTDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 348 LMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKARNV 427
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 428 DVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGV 507
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2170279101 508 IFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALF 544
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
345-543 |
6.84e-120 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 351.49 E-value: 6.84e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
344-544 |
1.96e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 317.04 E-value: 1.96e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 344 PFVILMVGVNGVGKTTTIGKLARQFQQEG-KSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAA 422
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 423 KARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGT 502
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2170279101 503 AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALF 544
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
345-543 |
3.43e-102 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 306.01 E-value: 3.43e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
345-543 |
8.13e-95 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 286.96 E-value: 8.13e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVmkkldeDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
289-545 |
2.78e-83 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 262.60 E-value: 2.78e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 289 ADVGVETTRKIITNLTE---GASRKDLRDAEAL-YGLLKEEMGEILAK-----VDEPLKVEGKtPFVILMVGVNGVGKTT 359
Cdd:PRK14974 77 SDVALEVAEEILESLKEklvGKKVKRGEDVEEIvKNALKEALLEVLSVgdlfdLIEEIKSKGK-PVVIVFVGVNGTGKTT 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 360 TIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQ 439
Cdd:PRK14974 156 TIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMH 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 440 NKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPI 519
Cdd:PRK14974 236 TDANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPI 309
|
250 260
....*....|....*....|....*.
gi 2170279101 520 RYIGVGERIEDLRPFNAGDFIEALFA 545
Cdd:PRK14974 310 LFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
289-535 |
1.56e-76 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 248.01 E-value: 1.56e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 289 ADVGVETTRKIITNLTEGASRKD----LRDAEALYGLLKEEMGEILAKVDEPLKVEGKTPFVILMVGVNGVGKTTTIGKL 364
Cdd:COG0541 41 ADVNLKVVKDFIERVKERALGEEvlksLTPGQQVIKIVHDELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 365 ARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHL 444
Cdd:COG0541 121 AKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEEL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 445 MEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 524
Cdd:COG0541 201 MDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGT 274
|
250
....*....|.
gi 2170279101 525 GERIEDLRPFN 535
Cdd:COG0541 275 GEKLDDLEPFH 285
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
346-534 |
1.81e-66 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 213.61 E-value: 1.81e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKAR 425
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 426 NVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKG 505
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 2170279101 506 GVIFSVADQFGIPIRYIGVGERIEDLRPF 534
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
324-540 |
6.03e-60 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 204.67 E-value: 6.03e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 324 EEMGEILAKvDEPLKVEGKTPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVI 403
Cdd:PRK00771 76 EELVKLLGE-ETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 404 AQHTGADSASVIFDAIQAAKarNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAK 483
Cdd:PRK00771 155 GDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAK 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2170279101 484 LFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFI 540
Cdd:PRK00771 227 AFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
345-543 |
1.11e-53 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 180.08 E-value: 1.11e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAK 504
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2170279101 505 GGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
345-543 |
1.83e-49 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 169.33 E-value: 1.83e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 345 FVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKA 424
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIVrvmkklDEDAPHEVMLTLDASTGQNAISQAKLFHEAV----------GLTGI 494
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLI------KENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2170279101 495 TLTKLDgTA--KGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEAL 543
Cdd:cd17876 155 VLTKFD-TIddKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
297-548 |
8.36e-41 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 151.17 E-value: 8.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 297 RKIITNLTEGASRKDlrDAEALYGLLKEEMGEILAKVDEPLKVEGKtpfVILMVGVNGVGKTTTIGKLARQF-QQEGKSV 375
Cdd:COG1419 122 PELARELLEKLPEDL--SAEEAWRALLEALARRLPVAEDPLLDEGG---VIALVGPTGVGKTTTIAKLAARFvLRGKKKV 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 376 MLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIfdaiqaAKARNVDVLLADTAGRLQNKAHLMEELKKIvrvm 455
Cdd:COG1419 197 ALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL------ERLRDKDLVLIDTAGRSPRDPELIEELKAL---- 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 456 kkLDEDAPHEVMLTLDAST-GQNAISQAKLFhEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDLRP 533
Cdd:COG1419 267 --LDAGPPIEVYLVLSATTkYEDLKEIVEAF-SSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEV 343
|
250
....*....|....*
gi 2170279101 534 FNAGDFIEALFARED 548
Cdd:COG1419 344 ADPERLARLLLGGLE 358
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
289-548 |
2.62e-40 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 151.53 E-value: 2.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 289 ADVGVETTRKIITNLTEGASRKDLRDAEALYGLLKEEM-GEILAKVD---EPLKVEGKTPFVILMVGVNGVGKTTTIGKL 364
Cdd:TIGR01425 41 SDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVfEELCNLVDpgvEAFTPKKGKTCVIMFVGLQGAGKTTTCTKL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 365 ARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLLADTAGRLQNKAHL 444
Cdd:TIGR01425 121 AYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKEL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 445 MEELKKIVRVMKkldedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 524
Cdd:TIGR01425 201 FEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGT 274
|
250 260
....*....|....*....|....
gi 2170279101 525 GERIEDLRPFNAGDFIEALFARED 548
Cdd:TIGR01425 275 GEHVDEFEIFDAEPFVSKLLGMGD 298
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
346-543 |
5.92e-36 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 132.67 E-value: 5.92e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKLARQFQ-QEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAqhtgADSASVIFDAIqaAKA 424
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEV----AEDPEDLADAL--ERL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RNVDVLLADTAGRLQNKAHLMEELKKIvrvmkkLDEDAPHEVMLTLDAST-GQNAISQAKLFhEAVGLTGITLTKLDGTA 503
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKEL------LGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2170279101 504 KGGVIFSVADQFGIPIRYIGVGERI-EDLRPFNAGDFIEAL 543
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
294-532 |
3.24e-28 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 116.92 E-value: 3.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 294 ETTRKIITNLTEGASRKDLRDAEALYGLLKEEmgeILAKVDEPLKVEGktpfVILMVGVNGVGKTTTIGKLARQFQQ--E 371
Cdd:PRK05703 178 EIAEKLLKLLLEHMPPRERTAWRYLLELLANM---IPVRVEDILKQGG----VVALVGPTGVGKTTTLAKLAARYALlyG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 372 GKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIfdaiqaAKARNVDVLLADTAGRLQNKAHLMEELKKI 451
Cdd:PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKAL------EQLRDCDVILIDTAGRSQRDKRLIEELKAL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 452 VRvmkklDEDAPHEVMLTLdASTGQN-----AISQAKLfheaVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 526
Cdd:PRK05703 325 IE-----FSGEPIDVYLVL-SATTKYedlkdIYKHFSR----LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQ 394
|
....*..
gi 2170279101 527 RI-EDLR 532
Cdd:PRK05703 395 RVpDDIK 401
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
310-436 |
4.99e-15 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 75.45 E-value: 4.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 310 KDLRDAEALYGLLKEEMGEILA--KVDEPLKVEGKtpfVILMVGVNGVGKTTTIGKLARQF--QQEGKSVMLAAGDTFRA 385
Cdd:TIGR03499 161 PEDADAEDAWRWLREALEGMLPvkPEEDPILEQGG---VIALVGPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRI 237
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2170279101 386 AAVEQLQVWGDRNNIPVIAQHTGADSASVIfdaiqaAKARNVDVLLADTAG 436
Cdd:TIGR03499 238 GAVEQLKTYAEILGIPVKVARDPKELREAL------DRLRDKDLILIDTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
330-540 |
2.48e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 75.80 E-value: 2.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 330 LAKVDePLKVEGktpfVILMVGVNGVGKTTTIGKLARQF--QQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPViaqHT 407
Cdd:PRK12727 341 VAPVD-PLERGG----VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---HE 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 408 gADSASVIFDAIQaaKARNVDVLLADTAGRLQNKAHLMEELK--KIVRVMKKLdedaphevmLTLDASTGQNAISQAKLF 485
Cdd:PRK12727 413 -ADSAESLLDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNwlRAARQVTSL---------LVLPANAHFSDLDEVVRR 480
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2170279101 486 HEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDLRPFNAGDFI 540
Cdd:PRK12727 481 FAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLV 536
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
343-469 |
8.64e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.94 E-value: 8.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 343 TPFVILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQvwgdrnNIPVIAQHTGADSASVIFDAIQAA 422
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2170279101 423 KARNVDVLLADTAGRLQNKAHLMEELKKIV-RVMKKLDEDAPHEVMLT 469
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEElRLLLLLKSEKNLTVILT 122
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
346-545 |
1.53e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 73.68 E-value: 1.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKLA-RQFQQEGKS-VMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADsasvIFDAIQAAK 423
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAaRCVAREGADqLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 424 ARNvdVLLADTAGRLQNKAHLMEELKKIVRVmkkldeDAPHEVMLTLdastgqNAISQAKLFHEAV---------GLTGI 494
Cdd:PRK14723 263 DKH--LVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLL------NAASHGDTLNEVVhayrhgageDVDGC 328
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2170279101 495 TLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDLRPFNAGDFIEALFA 545
Cdd:PRK14723 329 IITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAFA 380
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
289-530 |
4.27e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 70.91 E-value: 4.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 289 ADVGVETTRKIITNLTEGASRkDLRDAEALYG--LLKEEMgEILAKVDEPLKVEGktpfVILMVGVNGVGKTTTIGKLA- 365
Cdd:PRK14722 86 AGFSAQLVRMIVDNLPEGEGY-DTLDAAADWAqsVLAANL-PVLDSEDALMERGG----VFALMGPTGVGKTTTTAKLAa 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 366 RQFQQEGKS-VMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSAsvifdaIQAAKARNVDVLLADTAGRLQNKAHL 444
Cdd:PRK14722 160 RCVMRFGASkVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRTV 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 445 MEELKKIvrvmkkLDEDAPHEVMLTLDASTGQNAISQA-KLFHEAVG--------LTGITLTKLDGTAKGGVIFSVADQF 515
Cdd:PRK14722 234 SDQIAML------HGADTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAGCILTKLDEASNLGGVLDTVIRY 307
|
250
....*....|....*
gi 2170279101 516 GIPIRYIGVGERIED 530
Cdd:PRK14722 308 KLPVHYVSTGQKVPE 322
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
18-184 |
1.09e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 70.84 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 18 KEQASEQEPEQKVAEEQPVAEEV-VEQIIEAEQPQAADETAQSEEIKPEAQTEIQPEVLPEAEPvvlekhEEPEAFAEEI 96
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVET------THPEVIAAPV 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 97 VEVTEkLVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVA-PEAVQVESLEEWQPEQEPVVAETAVKTVVEP 175
Cdd:PRK10811 925 TEQPQ-VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003
|
....*....
gi 2170279101 176 EEIAVAPVE 184
Cdd:PRK10811 1004 AQVPEATVE 1012
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
346-533 |
1.95e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 68.99 E-value: 1.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAqhtgADSASVIFDAIQAAKAR 425
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 426 N-VDVLLADTAGRlqnkAHLMEELKKIVRVMKkldeDAPHEVMLTLDASTGQNAISQAKLFHE--AVGLTGITLTKLDGT 502
Cdd:PRK12726 284 NcVDHILIDTVGR----NYLAEESVSEISAYT----DVVHPDLTCFTFSSGMKSADVMTILPKlaEIPIDGFIITKMDET 355
|
170 180 190
....*....|....*....|....*....|...
gi 2170279101 503 AKGGVIFSVADQFGIPIRYIGVGERIED--LRP 533
Cdd:PRK12726 356 TRIGDLYTVMQETNLPVLYMTDGQNITEniFRP 388
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
346-535 |
3.11e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 68.45 E-value: 3.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKLA-RQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTgadsasviFDAIQAAKA 424
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAaKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD--------IKKFKETLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 425 RN-VDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDaphEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTA 503
Cdd:PRK12724 297 RDgSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSV---ENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373
|
170 180 190
....*....|....*....|....*....|..
gi 2170279101 504 KGGVIFSVADQFGIPIRYIGVGERIedlrPFN 535
Cdd:PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEV----PFD 401
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
347-529 |
3.89e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.09 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 347 ILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHtgaDSASVIFDAIQAAKARN 426
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 427 VDVLLADTAGRLQNKAHLMEELkkiVRVMKKLDedaPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGG 506
Cdd:PRK11889 321 VDYILIDTAGKNYRASETVEEM---IETMGQVE---PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 394
|
170 180
....*....|....*....|...
gi 2170279101 507 VIFSVADQFGIPIRYIGVGERIE 529
Cdd:PRK11889 395 ELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
347-529 |
1.36e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.07 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 347 ILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHtgaDSASVIFDAIQAAKARN 426
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 427 VDVLLADTAGRLQNKAHLMEELkkivrvMKKLDEDAPHEVMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGG 506
Cdd:PRK06731 155 VDYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 228
|
170 180
....*....|....*....|...
gi 2170279101 507 VIFSVADQFGIPIRYIGVGERIE 529
Cdd:PRK06731 229 ELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
344-526 |
2.36e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 62.61 E-value: 2.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 344 PFVILMVGVNGVGKTTTIGKLARQF----QQEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDai 419
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 420 qaakARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKldeDAphEVMLTLDASTGQNAISQakLFH--EAVGLTGITLT 497
Cdd:PRK12723 252 ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---DA--EFHLAVSSTTKTSDVKE--IFHqfSPFSYKTVIFT 320
|
170 180
....*....|....*....|....*....
gi 2170279101 498 KLDGTAKGGVIFSVADQFGIPIRYIGVGE 526
Cdd:PRK12723 321 KLDETTCVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
346-544 |
5.92e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 51.87 E-value: 5.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKL-ARQFQQEGKS-VMLAAGDTFRAAAVEQLQVWGDRNNIPViaqHTGADSASVifdAIQAAK 423
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLaARAVIRHGADkVALLTTDSYRIGGHEQLRIYGKLLGVSV---RSIKDIADL---QLMLHE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 424 ARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEdaphevMLTLDASTGQNAISQAKLFHEAVGLTGITLTKLDGTA 503
Cdd:PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKH------LLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2170279101 504 KGGVIFSVADQFGIPIRYIGVGERI-EDLRPFNAGDFIEALF 544
Cdd:PRK14721 341 SLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
258-330 |
1.19e-06 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 46.39 E-value: 1.19e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2170279101 258 KQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE---GASRKDLRDAEALYGLLKEEMGEIL 330
Cdd:smart00963 2 SKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEkakGEVLKGLTPKQEVKKILKEELVKIL 77
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
76-240 |
1.86e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 50.81 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 76 PEAEPVVLEKHEEPEAfaeEIVEVTEKLVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVAPEAVQVESLEE 155
Cdd:PRK10811 846 PVVRPQDVQVEEQREA---EEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAA 922
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 156 WQPEQEPVVAET----AVKTVVEPEEIAVAPVEAIVVEDVIVEEVVAEEAPVEEVVEDIPVAAVIVEEAAAELEPEESQA 231
Cdd:PRK10811 923 PVTEQPQVITESdvavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
|
....*....
gi 2170279101 232 EEVQHEQER 240
Cdd:PRK10811 1003 PAQVPEATV 1011
|
|
| MamJ |
NF040987 |
magnetosome protein MamJ; Magnetosomes are special lipid-bound organelles that comprise ... |
17-181 |
7.12e-06 |
|
magnetosome protein MamJ; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. It has been reported that proteins of this family were involved in the assembly of magnetosome chains.
Pssm-ID: 468917 [Multi-domain] Cd Length: 412 Bit Score: 48.53 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 17 QKEQASEQEPEQKVAEEQPVAEEVVEQIIEAEQPQAADETAQSE-EIKPEAQTEIQPEVLPEAEPV-------VLEKHEE 88
Cdd:NF040987 145 QPVQSAELEASIEVEPALPPAEPVAEVEDVFVDVVAEAEPEPEAvVIEAEGAEAEPEDALPEPEPVeevieidAAEIEPE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 89 PEAFAEEIVEVTEklVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVAPEAVQVESLEEWQPEQEPVVAETA 168
Cdd:NF040987 225 PEAVHDNEMTEAE--GDPEMIPVEVEAEIEPEPELIDAVVELVTEFEVSEAEAVVSAEAIAAPAPATDSPLAELSMAAAA 302
|
170
....*....|...
gi 2170279101 169 VkTVVEPEEIAVA 181
Cdd:NF040987 303 M-TLISAPSVAVA 314
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
18-182 |
6.62e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.85 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 18 KEQASEQEP-EQKVAEEQPVAEEVVEQiiEAEQPQAADETAQSEEIKPEAQTEIQPEVLPEAEPVVLEKHEEPEAFAEEI 96
Cdd:PRK10263 388 QPAVQYNEPlQQPVQPQQPYYAPAAEQ--PAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 97 VEVTEKLVESEvaavEPEIIPEPEPEPEVTAQAVVEHEELPVP-----EEIVAPEAVQVESLEEW-QPEQEPVVAETAVK 170
Cdd:PRK10263 466 QTYQQPAAQEP----LYQQPQPVEQQPVVEPEPVVEETKPARPplyyfEEVEEKRAREREQLAAWyQPIPEPVKEPEPIK 541
|
170
....*....|..
gi 2170279101 171 TVVEPEEIAVAP 182
Cdd:PRK10263 542 SSLKAPSVAAVP 553
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
346-531 |
8.83e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 44.96 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 346 VILMVGVNGVGKTTTIGKL-ARQFQQEGKS-VMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSasvifdAIQAAK 423
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLaARCVMRHGASkVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADL------RLALSE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 424 ARNVDVLLADTAGRLQNKAHLMEELKKIVRVmkkldeDAPHEVMLTLdastgqNAISQAKLFHEAV------GLTGITLT 497
Cdd:PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA------GAPVKRLLLL------NATSHGDTLNEVVqayrgpGLAGCILT 399
|
170 180 190
....*....|....*....|....*....|....*
gi 2170279101 498 KLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDL 531
Cdd:PRK06995 400 KLDEAASLGGALDVVIRYKLPLHYVSNGQRVpEDL 434
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
19-133 |
1.19e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.03 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 19 EQASEQEPEQKVAEEQP--VAEEVVEQ---IIEAEQPQAADETAQSEEIKPEAQTEiqpEVLPEAEPVVLEKHEEPEAFA 93
Cdd:PRK10811 901 VAEPQPEEVVVVETTHPevIAAPVTEQpqvITESDVAVAQEVAEHAEPVVEPQDET---ADIEEAAETAEVVVAEPEVVA 977
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2170279101 94 EEIVEVteklVESEVAAVEPEIIPEPEPEPEVTAQAVVEH 133
Cdd:PRK10811 978 QPAAPV----VAEVAAEVETVTAVEPEVAPAQVPEATVEH 1013
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
259-326 |
3.99e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 38.99 E-value: 3.99e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2170279101 259 QNLGSGFISLFRGKKIDDDLFEELEEQLLI----ADVGVETTRKIITNLTEGA-SRKDLRDAEALYGLLKEEM 326
Cdd:pfam02881 3 EKLSSLFKGLRGKGKIDEEDLEEALKELEEalleADVGVEVVKKIIERLREKAvGEKKLKPPQEVKKILKEEL 75
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
19-181 |
9.73e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 19 EQASEQEPEQKVAEEQPVAEEV--VEQIIEAEQPQAADETAQSEEIKPEAQTEIQPEVLPEAEPVVLEKHEEPEAFAEEI 96
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAkkADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2170279101 97 VEVTEKLVESEVAAVEPEIIPEPEPEPEVTAQAVVEHEELPVPEEIVAPEAVQVESLEEWQPEQEPVVAETAVKTVVEPE 176
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
....*
gi 2170279101 177 EIAVA 181
Cdd:PTZ00121 1660 KIKAA 1664
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
346-388 |
1.64e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 39.07 E-value: 1.64e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2170279101 346 VILMVGVNGVGKTTTIGKLARQFQQEGKSVMLAAgDTFRAAAV 388
Cdd:cd17933 14 VSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAA-PTGKAAKR 55
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
338-388 |
5.79e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.19 E-value: 5.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2170279101 338 KVEGKTPFVILmVGVNGVGKTTTIGKLARQFQQEGKSVMLAA--GdtfRAAAV 388
Cdd:COG0507 135 LALTTRRVSVL-TGGAGTGKTTTLRALLAALEALGLRVALAAptG---KAAKR 183
|
|
| AdSS |
cd03108 |
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in ... |
490-525 |
6.59e-03 |
|
adenylosuccinate synthetase; Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Pssm-ID: 349762 Cd Length: 316 Bit Score: 38.63 E-value: 6.59e-03
10 20 30
....*....|....*....|....*....|....*.
gi 2170279101 490 GLTGITLTKLDGTAKGGVIFsVADQFGIPIRYIGVG 525
Cdd:cd03108 274 GLTELALTKLDVNAQKYIER-IEELLGVPITYISVG 308
|
|
| DUF3664 |
pfam12406 |
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ... |
25-91 |
9.75e-03 |
|
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length.
Pssm-ID: 289191 [Multi-domain] Cd Length: 99 Bit Score: 36.01 E-value: 9.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2170279101 25 EPEQKVAEEQPVAEEVVEQIIEAEQPqaADETAQSEEIKPEAQTEIQPEVLPEAEP-----VVLEKHEEPEA 91
Cdd:pfam12406 19 DPDQLIDQIEPSEQPAQQEPIEPQQP--TQPSTEPEELQPETVTVEVPEPVTSEEPkesdqTEEQKHEEPEA 88
|
|
| |
