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Conserved domains on  [gi|2158349214|ref|WP_230626075|]
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alpha/beta fold hydrolase [Cupriavidus necator]

Protein Classification

alpha/beta fold hydrolase( domain architecture ID 10191051)

alpha/beta fold hydrolase similar to Alcaligenes esterase 713 which does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class and shows low sequence similarity to other esterase and lipase enzymes, is active as a dimer and cleaves esters on halogenated cyclic compounds (its natural substrate is unknown)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Esterase_713_like-3 cd12810
Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated ...
10-337 0e+00

Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.


:

Pssm-ID: 214009  Cd Length: 328  Bit Score: 587.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  10 PLVIQAQGSFAVGGTVKTEPGTFDPLKPLASQGQTYHGDHAYAFYQVPVKPHRLPIVMWHGAGQFSKSWESTPDGREGFQ 89
Cdd:cd12810     1 PLVIAEQGSFAAGGTVVTSPGTFDPSLPPSPAGQTLHGDHAYVFYQIPVNARKLPLVFLHGAGQSGKTWETTPDGREGFQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  90 NIFLRRGFATYLLDQPRRGDAGRSMVEATIKPAGDEQMWFNQFRVGVWPKYFDGVQFARDPETLNQYFRSMTPNIGPFDM 169
Cdd:cd12810    81 TIFLRKGYPVYLVDQPRRGRAGRSTVAGTITPTPDDQTWFDQFRIGAWPNGFPGVQFPKDPEALDQFFRQMTPNTGPFDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 170 TVVSAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPNVKAIVAFEPGSNFVFPEGEVPPPMVSAFDTLQGVPIPKADFL 249
Cdd:cd12810   161 EVIADAVAALFDRIGPSILVTHSQGGGPGWLTAMKNDNVKAIVAYEPGGGPFPPGEEPPPPPPSAFGPLGPVGVPLEDFL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 250 KLTRLPIIIYYGDNIPDRPTTLPAQDSWRVRLAMARLWRDTVNRHGGDVTVVHLPEIGIKGNTHFPFSDLNNVQIADQVS 329
Cdd:cd12810   241 KLTKIPIVIYFGDNIPDGPSDIPGLDFWRVRLAMARLFAEAINKHGGDATVVHLPDIGIKGNTHFPFSDLNNVEIADLLE 320

                  ....*...
gi 2158349214 330 KFIVEKGL 337
Cdd:cd12810   321 KWLKEKGL 328
 
Name Accession Description Interval E-value
Esterase_713_like-3 cd12810
Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated ...
10-337 0e+00

Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.


Pssm-ID: 214009  Cd Length: 328  Bit Score: 587.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  10 PLVIQAQGSFAVGGTVKTEPGTFDPLKPLASQGQTYHGDHAYAFYQVPVKPHRLPIVMWHGAGQFSKSWESTPDGREGFQ 89
Cdd:cd12810     1 PLVIAEQGSFAAGGTVVTSPGTFDPSLPPSPAGQTLHGDHAYVFYQIPVNARKLPLVFLHGAGQSGKTWETTPDGREGFQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  90 NIFLRRGFATYLLDQPRRGDAGRSMVEATIKPAGDEQMWFNQFRVGVWPKYFDGVQFARDPETLNQYFRSMTPNIGPFDM 169
Cdd:cd12810    81 TIFLRKGYPVYLVDQPRRGRAGRSTVAGTITPTPDDQTWFDQFRIGAWPNGFPGVQFPKDPEALDQFFRQMTPNTGPFDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 170 TVVSAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPNVKAIVAFEPGSNFVFPEGEVPPPMVSAFDTLQGVPIPKADFL 249
Cdd:cd12810   161 EVIADAVAALFDRIGPSILVTHSQGGGPGWLTAMKNDNVKAIVAYEPGGGPFPPGEEPPPPPPSAFGPLGPVGVPLEDFL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 250 KLTRLPIIIYYGDNIPDRPTTLPAQDSWRVRLAMARLWRDTVNRHGGDVTVVHLPEIGIKGNTHFPFSDLNNVQIADQVS 329
Cdd:cd12810   241 KLTKIPIVIYFGDNIPDGPSDIPGLDFWRVRLAMARLFAEAINKHGGDATVVHLPDIGIKGNTHFPFSDLNNVEIADLLE 320

                  ....*...
gi 2158349214 330 KFIVEKGL 337
Cdd:cd12810   321 KWLKEKGL 328
 
Name Accession Description Interval E-value
Esterase_713_like-3 cd12810
Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated ...
10-337 0e+00

Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.


Pssm-ID: 214009  Cd Length: 328  Bit Score: 587.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  10 PLVIQAQGSFAVGGTVKTEPGTFDPLKPLASQGQTYHGDHAYAFYQVPVKPHRLPIVMWHGAGQFSKSWESTPDGREGFQ 89
Cdd:cd12810     1 PLVIAEQGSFAAGGTVVTSPGTFDPSLPPSPAGQTLHGDHAYVFYQIPVNARKLPLVFLHGAGQSGKTWETTPDGREGFQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  90 NIFLRRGFATYLLDQPRRGDAGRSMVEATIKPAGDEQMWFNQFRVGVWPKYFDGVQFARDPETLNQYFRSMTPNIGPFDM 169
Cdd:cd12810    81 TIFLRKGYPVYLVDQPRRGRAGRSTVAGTITPTPDDQTWFDQFRIGAWPNGFPGVQFPKDPEALDQFFRQMTPNTGPFDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 170 TVVSAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPNVKAIVAFEPGSNFVFPEGEVPPPMVSAFDTLQGVPIPKADFL 249
Cdd:cd12810   161 EVIADAVAALFDRIGPSILVTHSQGGGPGWLTAMKNDNVKAIVAYEPGGGPFPPGEEPPPPPPSAFGPLGPVGVPLEDFL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 250 KLTRLPIIIYYGDNIPDRPTTLPAQDSWRVRLAMARLWRDTVNRHGGDVTVVHLPEIGIKGNTHFPFSDLNNVQIADQVS 329
Cdd:cd12810   241 KLTKIPIVIYFGDNIPDGPSDIPGLDFWRVRLAMARLFAEAINKHGGDATVVHLPDIGIKGNTHFPFSDLNNVEIADLLE 320

                  ....*...
gi 2158349214 330 KFIVEKGL 337
Cdd:cd12810   321 KWLKEKGL 328
Esterase_713_like cd12806
Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family ...
13-334 1.35e-95

Novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown. This enzyme is possibly exported from the cytosol to the periplasmic space. A large majority of sequences in this family have yet to be characterized.


Pssm-ID: 214005  Cd Length: 261  Bit Score: 284.43  E-value: 1.35e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  13 IQAQGSFAVGGTVKTEPGTfdPLKPLASQGQTYHGDHAYAFYQVPVKPHRLPIVMWHGAGQFSKSWESTPDGREGFQNIF 92
Cdd:cd12806     1 LSGQGSFFVGGRDVTSSGL--SLSPKYDAHGTVTVDQMYVRYQIPVRAKRYPLLLIHGCGLTGMTWETTPDGRMGWDNYF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  93 LRRGFATYLLDQPRRGDAGrsmveatikpagdeqmWFNQfrvgvWPKYFDGVQFARDpetlnqyfrSMTPNIGPFDMTVV 172
Cdd:cd12806    79 LRKGYSVYVVDQPGRGRSG----------------WDTQ-----FPVQGQAELWQQM---------VPDWLGAMPTPNPT 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 173 SAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPN-VKAIVAFEPGSNFVFPegevpppmvsafdtlqgvpipkaDFLKL 251
Cdd:cd12806   129 VAALSKLADKLDPTVLLTHSQSGIFGFQTAAMRPKgIKAIVAVEPGGCPKPE-----------------------DVKPL 185
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 252 TRLPIIIYYGDNIPDRPttlpaqdSWRVRLAMARLWRDTVNRHGGDVTVVHLPEIGIKGNTHFPFSDLNNVQIADQVSKF 331
Cdd:cd12806   186 TSIPVLVVYGDHIEEFP-------RWAVRLKACVAFADALNAAGGDVQVVSLPALGIKGNSHMMMMDKNNLQVADLILDW 258

                  ...
gi 2158349214 332 IVE 334
Cdd:cd12806   259 IGR 261
Esterase_713 cd12807
Novel bacterial esterase 713 that cleaves esters on halogenated cyclic compounds; This family ...
10-335 5.47e-58

Novel bacterial esterase 713 that cleaves esters on halogenated cyclic compounds; This family contains proteins similar to a novel bacterial esterase (esterase 713) with the alpha/beta hydrolase fold that cleaves esters on halogenated cyclic compounds. This Alcaligenes esterase, however, does not contain the GXSXXG pentapeptide around the active site serine residue as seen in other esterase families. This enzyme is active as a dimer though its natural substrate is unknown. It has two distinct disulfide bridges; one formed between adjacent cysteines appears to facilitate the correct formation of the oxyanion cleft in the catalytic site. Esterase 713 also resembles human pancreatic lipase in its location of the acidic residue of the catalytic triad. It is possibly exported from the cytosol to the periplasmic space. A large majority of sequences in this family have yet to be characterized.


Pssm-ID: 214006  Cd Length: 315  Bit Score: 189.84  E-value: 5.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  10 PLVIQAQGSFAVGG-TVKTEPGTFDPlkPLASQGQTYHGDHAYAFYQVP-VKPHRLPIVMWHGAGQFSKSWESTPDGREG 87
Cdd:cd12807     1 PLTLADQGSFFVGGrPVFSDFPSSSP--SGYSAPGTITVNQMYVQYQIPqKGKKKYPIVLVHGCCLTGKTWETTPDGRMG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  88 FQNIFLRRGFATYLLDQPRRGDAG-----RSMVEATIKP---------AGDEQMWfNQFRVGvwPKY---FDGVQFardP 150
Cdd:cd12807    79 WDEYFVRKGHPVYVVDQVGRGRSGfdptiINAVKLGLAPpsalpaifrAGDEFAW-TNFRFG--PTYgvpFPDTQF---P 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 151 -ETLNQYFRSMTP--NIGPFDMTVVSAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPN-VKAIVAFEPGsnfvfpege 226
Cdd:cd12807   153 vEAVAEFYKQVVPdlNATLPTPNPTPNALAALADKLGGAVLLGHSQSGPFPLEAALLRPAgVKGIVSVEPG--------- 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 227 vpppmvsafdtlqGVPIPKADFLK-LTRLPIIIYYGDNIPdrpttLPAQDSWRVRLAMARLWRDTVNRHGGDVTVVHLPE 305
Cdd:cd12807   224 -------------CCPAPTADQIKtLAKIPILVVFGDHLD-----AASGPTWQQRLQACQAFVDRINAAGGDAKLLHLPD 285
                         330       340       350
                  ....*....|....*....|....*....|
gi 2158349214 306 IGIKGNTHFPFSDLNNVQIADQVSKFIVEK 335
Cdd:cd12807   286 LGIRGNSHMMMQDKNNLQIADLILDWIDKN 315
Esterase_713_like-1 cd12808
Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated ...
17-328 9.82e-50

Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.


Pssm-ID: 214007  Cd Length: 309  Bit Score: 168.19  E-value: 9.82e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  17 GSFAVGG---TVKTEPgTFD-------PLKPLASQGqTYHGDHAYAFYQVPVKP-HRLPIVMWHGAGQFSKSWESTPDGR 85
Cdd:cd12808     5 GSFFVGGrpvTLSGLP-VKEvvfapggAPRRVDPNG-TYVVGQMYVQYFLPARPrGPLPLLLWHGGGMTGATWETTPDGR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  86 EGFQNIFLRRGFATYLLDQPRRGDAGRSMVEATIKPA----GDEQMWfNQFRVGvwPKY---------FDGVQFArdPET 152
Cdd:cd12808    83 PGWLHYFLRAGHDVYVVDAVERGRAGWAMYPEIYKGApifrTKEEAW-ELFRIG--PAYgyadqprraFPGQQFP--LAA 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 153 LNQYFRSMTPN-IGPFDMTVvsAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPN-VKAIVAFEPGsnfvfpegevppp 230
Cdd:cd12808   158 FDAFAKQFVPRwLGTDALTL--AAYDALLDRVGPCIVVAHSQGGGFAFEAARARPDlVRAVVALEPS------------- 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 231 mvsafdtlqGVPIPkADFLKLTRLPIIIYYGDNIPDRPTtlpaqdsWRVRLAMARLWRDTVNRHGGDVTVVHLPEIGIKG 310
Cdd:cd12808   223 ---------GAPDP-AEAAPLADVPHLLVWGDYIDADPR-------WPRYRATVDAYAAALRAAGGRVDVLDLPAMGIRG 285
                         330
                  ....*....|....*...
gi 2158349214 311 NTHFPFSDLNNVQIADQV 328
Cdd:cd12808   286 NSHMLMMDRNSDQIAGLV 303
Esterase_713_like-2 cd12809
Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated ...
16-334 2.93e-39

Uncharacterized enzymes similar to novel bacterial esterase that cleaves esters on halogenated cyclic compounds; This family contains uncharacterized proteins similar to a novel bacterial esterase (Alcaligenes esterase 713) with the alpha/beta hydrolase fold but does not contain the GXSXXG pentapeptide around the active site serine residue as commonly seen in other enzymes of this class. Esterase 713 shows negligible sequence homology to other esterase and lipase enzymes. It is active as a dimer and cleaves esters on halogenated cyclic compounds though its natural substrate is unknown.


Pssm-ID: 214008  Cd Length: 280  Bit Score: 140.05  E-value: 2.93e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  16 QGSFAVGG-TVKTEPGTFdplkplaSQGQTYHgdhayaFYQVPVKPHR-LPIVMWHGAGQFSKSWESTPDGREGFQNIFL 93
Cdd:cd12809     4 RGYFYVGGrYVKQGGGTV-------TVGQMYV------EKLTPARVTRpYPIVLIHGGGQTGTNWLNTPDGRPGWASYFL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214  94 RRGFATYLLDQPRRG------DAGRSMVEATIKPAGDE------QMWFNQFRVGV-WPkyFDGVqfaRDPETLNQYFRSM 160
Cdd:cd12809    71 EKGYEVYIVDQPGRGrspwnpEVGGPLAASTAETVEQRftaperYNLWPQAKLHTqWP--GTGR---RGDPIFDQFYASQ 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 161 TPNIGPFD--MTVVSAGVSALFDKIGPGILFTHSQGGGPGWVTVIRNPN-VKAIVAFEPGSnfvfpegevPPpmvsaFDt 237
Cdd:cd12809   146 VPLLTNLAeqEALVRAAGCALLDIIGPAILITHSQGGPFGWLAADARPDlVKAIVAIEPSG---------PP-----FN- 210
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158349214 238 lqgvpipkadflkLTRLPIIIYYGD---NIP-DRPTTlpaqdswrVRLAMArlwrdtvnrhGGDVTVVHLPEIGIKGNTH 313
Cdd:cd12809   211 -------------LAKVPVLVVTAEasyHAPyDHCTV--------AFLRQA----------GVKVDHLRLADHGIRGNGH 259
                         330       340
                  ....*....|....*....|.
gi 2158349214 314 FPFSDLNNVQIADQVSKFIVE 334
Cdd:cd12809   260 MMFLEKNSDEIAGVVLGWISK 280
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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