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Conserved domains on  [gi|2127793359|ref|WP_227740717|]
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hypothetical protein [Vibrio campbellii]

Protein Classification

carbohydrate binding domain-containing protein( domain architecture ID 140964)

carbohydrate binding domain-containing protein similar to Cellulomonas fimi endoglucanase CenC and Rhodothermus marinus xylanase

CATH:  2.60.120.260
Gene Ontology:  GO:0030246
PubMed:  19908036

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBM_4_9 super family cl19911
Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.
 153-282 1.96e-05

Carbohydrate binding domain; This family includes diverse carbohydrate binding domains.


The actual alignment was detected with superfamily member TIGR04362:

Pssm-ID: 418717 [Multi-domain]  Cd Length: 157  Bit Score: 45.05  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127793359 153 KAPNGGYSLIVGKPNTEATITTLLQTVPGHTYTLSFEMTGEFVKYPGLSYTyqpvnsVVNVGGetvflNKQHPLFKTEFW 232
Cdd:TIGR04362  46 QASEGSRSIDLNGTTGPGGISQTFNTVAGQTYRVTFDLAGNPDGGPGLKDL------TVSVGG-----ASQDFSFDTTGK 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2127793359 233 IRGNLGysyapwdnrengrdhWEKVELQFVASQQQTSLSFTSeaLTSDGA 282
Cdd:TIGR04362 115 TTANMG---------------WTTKSFDFTATSTSTTLSFTS--LDNGGA 147
 
Name Accession Description Interval E-value
choice_anch_C TIGR04362
choice-of-anchor C domain; This family describes an extracellular bacterial domain that occurs ...
 153-282 1.96e-05

choice-of-anchor C domain; This family describes an extracellular bacterial domain that occurs on a number of proteins with PEP-CTERM (exosortase recognition site) sequences at the C-terminus, as well some with an apparent alternate anchor sequence. Note that related pfam04862 (DUF642), as of release 26, is double the length of this model because it has two tandem regions homologous to this domain. pfam04862, in turn, belongs to a Pfam clan called the galactose-binding domain-like superfamily.


Pssm-ID: 275156 [Multi-domain]  Cd Length: 157  Bit Score: 45.05  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127793359 153 KAPNGGYSLIVGKPNTEATITTLLQTVPGHTYTLSFEMTGEFVKYPGLSYTyqpvnsVVNVGGetvflNKQHPLFKTEFW 232
Cdd:TIGR04362  46 QASEGSRSIDLNGTTGPGGISQTFNTVAGQTYRVTFDLAGNPDGGPGLKDL------TVSVGG-----ASQDFSFDTTGK 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2127793359 233 IRGNLGysyapwdnrengrdhWEKVELQFVASQQQTSLSFTSeaLTSDGA 282
Cdd:TIGR04362 115 TTANMG---------------WTTKSFDFTATSTSTTLSFTS--LDNGGA 147
 
Name Accession Description Interval E-value
choice_anch_C TIGR04362
choice-of-anchor C domain; This family describes an extracellular bacterial domain that occurs ...
 153-282 1.96e-05

choice-of-anchor C domain; This family describes an extracellular bacterial domain that occurs on a number of proteins with PEP-CTERM (exosortase recognition site) sequences at the C-terminus, as well some with an apparent alternate anchor sequence. Note that related pfam04862 (DUF642), as of release 26, is double the length of this model because it has two tandem regions homologous to this domain. pfam04862, in turn, belongs to a Pfam clan called the galactose-binding domain-like superfamily.


Pssm-ID: 275156 [Multi-domain]  Cd Length: 157  Bit Score: 45.05  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127793359 153 KAPNGGYSLIVGKPNTEATITTLLQTVPGHTYTLSFEMTGEFVKYPGLSYTyqpvnsVVNVGGetvflNKQHPLFKTEFW 232
Cdd:TIGR04362  46 QASEGSRSIDLNGTTGPGGISQTFNTVAGQTYRVTFDLAGNPDGGPGLKDL------TVSVGG-----ASQDFSFDTTGK 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2127793359 233 IRGNLGysyapwdnrengrdhWEKVELQFVASQQQTSLSFTSeaLTSDGA 282
Cdd:TIGR04362 115 TTANMG---------------WTTKSFDFTATSTSTTLSFTS--LDNGGA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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