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Conserved domains on  [gi|2111020582|ref|WP_225879202|]
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IS481 family transposase, partial [Zeimonas arvi]

Protein Classification

transposase family protein( domain architecture ID 1750099)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0046872|GO:0003676|GO:0006310
PubMed:  11774877

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS481 super family cl41329
IS481 family transposase; null
 1-234 5.39e-85

IS481 family transposase; null


The actual alignment was detected with superfamily member NF033577:

Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 255.21  E-value: 5.39e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582   1 IAPSKALAIVELRR-RRLTQSRIAASLC-----VSESTVSRVLSRAGLSKLADLQPAEPI-RRYEHAAPGDLLHIDTKKL 73
Cdd:NF033577   59 TSPETEARILALRReLRLGPRRIAYELErqgpgVSRSTVHRILRRHGLSRLRALDRKTGKvKRYERAHPGELWHIDIKKL 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  74 GRIerashrvtgnrrdsvDGAGWEFLFVAIDDHARIAFTQMQLDERGPSAVAFLRAAvayYASLGVTVRRLLTDNGGAFR 153
Cdd:NF033577  139 GRI---------------PDVGRLYLHTAIDDHSRFAYAELYPDETAETAADFLRRA---FAEHGIPIRRVLTDNGSEFR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 154 SK--IFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPI 231
Cdd:NF033577  201 SRahGFELALAELGIEHRRTRPYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPA 280


                  ...
gi 2111020582 232 SRL 234
Cdd:NF033577  281 ERF 283
 
Name Accession Description Interval E-value
transpos_IS481 NF033577
IS481 family transposase; null
 1-234 5.39e-85

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 255.21  E-value: 5.39e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582   1 IAPSKALAIVELRR-RRLTQSRIAASLC-----VSESTVSRVLSRAGLSKLADLQPAEPI-RRYEHAAPGDLLHIDTKKL 73
Cdd:NF033577   59 TSPETEARILALRReLRLGPRRIAYELErqgpgVSRSTVHRILRRHGLSRLRALDRKTGKvKRYERAHPGELWHIDIKKL 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  74 GRIerashrvtgnrrdsvDGAGWEFLFVAIDDHARIAFTQMQLDERGPSAVAFLRAAvayYASLGVTVRRLLTDNGGAFR 153
Cdd:NF033577  139 GRI---------------PDVGRLYLHTAIDDHSRFAYAELYPDETAETAADFLRRA---FAEHGIPIRRVLTDNGSEFR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 154 SK--IFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPI 231
Cdd:NF033577  201 SRahGFELALAELGIEHRRTRPYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPA 280


                  ...
gi 2111020582 232 SRL 234
Cdd:NF033577  281 ERF 283
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
15-240 1.58e-27

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 107.93  E-value: 1.58e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  15 RRLTQSRIAASLCVSESTVSRVLSRAGL-----------SKLADLQPAEPIRRYEHAAPGDLLHIDTKKLgrierashRV 83
Cdd:COG2801    90 RRITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PT 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  84 TGnrrdsvdgaGWEFLFVAIDDHAR-IAFTQMQLDERGPSAVAFLRAAVA-YYASLGVTVRrllTDNGGAFRSKIFRAAC 161
Cdd:COG2801   162 AE---------GWLYLAAVIDLFSReIVGWSVSDSMDAELVVDALEMAIErRGPPKPLILH---SDNGSQYTSKAYQELL 229

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2111020582 162 LELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPISRLNAASDN 240
Cdd:COG2801   230 KKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAA 308
rve_3 pfam13683
Integrase core domain;
164-230 6.05e-20

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 81.11  E-value: 6.05e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2111020582 164 LGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPP 230
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
93-231 1.41e-18

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 84.15  E-value: 1.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  93 GAGWEFLFVAIDDHAR--IAFtQMQLDERGPSAVAFLRAAVAYYASLGVTVrrLLTDNGGAFRSKIFRAACLELGIRQKF 170
Cdd:NF033516  229 AEGWLYLAVVLDLFSReiVGW-SVSTSMSAELVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSM 305

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2111020582 171 TRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPI 231
Cdd:NF033516  306 SRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPA 366
transpos_IS21 NF033546
IS21 family transposase;
9-229 1.90e-07

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 51.05  E-value: 1.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582   9 IVELRRRRLTQSRIAASLCVSESTVSRVLSRAGLSKLADLQPAEPIRR----YEHAAPgDLLHIDTKKLG---------- 74
Cdd:NF033546    1 IRLLFRQGLSIREIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSkldpFEPYIP-DWLEAHLRKPGvtatllweel 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  75 ----------------RIERASHRV-------------------TGNRRDSVDGAGWEF-LFVAIDDHARIAFTQMQLDE 118
Cdd:NF033546   80 raegypgsystvrryvRRWRAEQGPakvfvrlehapgeqaqvdfGEATVVVTGGTGKILhVFVAVLGYSRYTYVEATPSE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 119 rgpSAVAFLRAAVAYYASLGVTVRRLLTDN-------GGAFRSKIFRAACLEL----GIRQKFTRPYRPQTNGKAERFIQ 187
Cdd:NF033546  160 ---SQEDLLDGHQRAFEFFGGVPREIVYDNlktavdkRDRYEEPRLNPRFAAFaahyGFEPRPCRPYRPQEKGKVERAVG 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2111020582 188 SaLREWAYGIAYNHST---ERTQMLAKWQHHYNWHRPHQGIGGVP 229
Cdd:NF033546  237 Y-VRRWFLRLRGRRFEslaELNAALAEWLAELANQRPHGTTGGSP 280
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 146-230 2.02e-07

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 51.02  E-value: 2.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 146 TDNGGAFRSKIFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGI 225
Cdd:PHA02517  175 SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERL 254


                  ....*
gi 2111020582 226 GGVPP 230
Cdd:PHA02517  255 GYTPP 259
 
Name Accession Description Interval E-value
transpos_IS481 NF033577
IS481 family transposase; null
 1-234 5.39e-85

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 255.21  E-value: 5.39e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582   1 IAPSKALAIVELRR-RRLTQSRIAASLC-----VSESTVSRVLSRAGLSKLADLQPAEPI-RRYEHAAPGDLLHIDTKKL 73
Cdd:NF033577   59 TSPETEARILALRReLRLGPRRIAYELErqgpgVSRSTVHRILRRHGLSRLRALDRKTGKvKRYERAHPGELWHIDIKKL 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  74 GRIerashrvtgnrrdsvDGAGWEFLFVAIDDHARIAFTQMQLDERGPSAVAFLRAAvayYASLGVTVRRLLTDNGGAFR 153
Cdd:NF033577  139 GRI---------------PDVGRLYLHTAIDDHSRFAYAELYPDETAETAADFLRRA---FAEHGIPIRRVLTDNGSEFR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 154 SK--IFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPI 231
Cdd:NF033577  201 SRahGFELALAELGIEHRRTRPYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPA 280


                  ...
gi 2111020582 232 SRL 234
Cdd:NF033577  281 ERF 283
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
15-240 1.58e-27

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 107.93  E-value: 1.58e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  15 RRLTQSRIAASLCVSESTVSRVLSRAGL-----------SKLADLQPAEPIRRYEHAAPGDLLHIDTKKLgrierashRV 83
Cdd:COG2801    90 RRITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PT 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  84 TGnrrdsvdgaGWEFLFVAIDDHAR-IAFTQMQLDERGPSAVAFLRAAVA-YYASLGVTVRrllTDNGGAFRSKIFRAAC 161
Cdd:COG2801   162 AE---------GWLYLAAVIDLFSReIVGWSVSDSMDAELVVDALEMAIErRGPPKPLILH---SDNGSQYTSKAYQELL 229

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2111020582 162 LELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPISRLNAASDN 240
Cdd:COG2801   230 KKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAA 308
rve_3 pfam13683
Integrase core domain;
164-230 6.05e-20

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 81.11  E-value: 6.05e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2111020582 164 LGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPP 230
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
93-231 1.41e-18

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 84.15  E-value: 1.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  93 GAGWEFLFVAIDDHAR--IAFtQMQLDERGPSAVAFLRAAVAYYASLGVTVrrLLTDNGGAFRSKIFRAACLELGIRQKF 170
Cdd:NF033516  229 AEGWLYLAVVLDLFSReiVGW-SVSTSMSAELVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSM 305

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2111020582 171 TRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGIGGVPPI 231
Cdd:NF033516  306 SRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPA 366
rve pfam00665
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ...
 62-176 4.44e-14

Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.


Pssm-ID: 459897 [Multi-domain]  Cd Length: 98  Bit Score: 66.57  E-value: 4.44e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  62 PGDLLHIDTKKLGRIerashrvtgnrrdsvDGAGWEFLFVAIDDHARIAFTqMQLDERGPS--AVAFLRAAVAYYaslGV 139
Cdd:pfam00665   1 PNQLWQGDFTYIRIP---------------GGGGKLYLLVIVDDFSREILA-WALSSEMDAelVLDALERAIAFR---GG 61

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2111020582 140 TVRRLLTDNGGAFRSKIFRAACLELGIRQKFTRPYRP 176
Cdd:pfam00665  62 VPLIIHSDNGSEYTSKAFREFLKDLGIKPSFSRPGNP 98
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
99-236 5.34e-13

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 67.60  E-value: 5.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  99 LFVAIDDHARIAFTQMQLDERGPSAVAFLRAAVAYYASLgvTVRRLLTDNGGAFRSkiFRAACLELGIRQKFTRPYRPQT 178
Cdd:COG2826   189 LLTLVERKSRFVILLKLPDKTAESVADALIRLLRKLPAF--LRKSITTDNGKEFAD--HKEIEAALGIKVYFADPYSPWQ 264

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2111020582 179 NGKAERFIQSALREWAYGIAYNHSTERTqmLAKWQHHYNwHRPHQGIGGVPPISRLNA 236
Cdd:COG2826   265 RGTNENTNGLLRQYFPKGTDFSTVTQEE--LDAIADRLN-NRPRKCLGYKTPAEVFAE 319
transpos_IS21 NF033546
IS21 family transposase;
9-229 1.90e-07

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 51.05  E-value: 1.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582   9 IVELRRRRLTQSRIAASLCVSESTVSRVLSRAGLSKLADLQPAEPIRR----YEHAAPgDLLHIDTKKLG---------- 74
Cdd:NF033546    1 IRLLFRQGLSIREIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSkldpFEPYIP-DWLEAHLRKPGvtatllweel 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582  75 ----------------RIERASHRV-------------------TGNRRDSVDGAGWEF-LFVAIDDHARIAFTQMQLDE 118
Cdd:NF033546   80 raegypgsystvrryvRRWRAEQGPakvfvrlehapgeqaqvdfGEATVVVTGGTGKILhVFVAVLGYSRYTYVEATPSE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 119 rgpSAVAFLRAAVAYYASLGVTVRRLLTDN-------GGAFRSKIFRAACLEL----GIRQKFTRPYRPQTNGKAERFIQ 187
Cdd:NF033546  160 ---SQEDLLDGHQRAFEFFGGVPREIVYDNlktavdkRDRYEEPRLNPRFAAFaahyGFEPRPCRPYRPQEKGKVERAVG 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2111020582 188 SaLREWAYGIAYNHST---ERTQMLAKWQHHYNWHRPHQGIGGVP 229
Cdd:NF033546  237 Y-VRRWFLRLRGRRFEslaELNAALAEWLAELANQRPHGTTGGSP 280
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 146-230 2.02e-07

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 51.02  E-value: 2.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 146 TDNGGAFRSKIFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQGI 225
Cdd:PHA02517  175 SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERL 254


                  ....*
gi 2111020582 226 GGVPP 230
Cdd:PHA02517  255 GYTPP 259
PRK14702 PRK14702
insertion element IS2 transposase InsD; Provisional
 145-245 3.68e-06

insertion element IS2 transposase InsD; Provisional


Pssm-ID: 237792 [Multi-domain]  Cd Length: 262  Bit Score: 47.03  E-value: 3.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 145 LTDNGGAFRSKIFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQG 224
Cdd:PRK14702  157 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSA 236

                          90       100
                  ....*....|....*....|....*.
gi 2111020582 225 IGGVPPISRL-----NAASDNNVLTL 245
Cdd:PRK14702  237 LGYRSPREYLrqracNGLSDNRCLEI 262
PRK09409 PRK09409
IS2 transposase TnpB; Reviewed
 145-245 4.26e-06

IS2 transposase TnpB; Reviewed


Pssm-ID: 181829 [Multi-domain]  Cd Length: 301  Bit Score: 47.02  E-value: 4.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111020582 145 LTDNGGAFRSKIFRAACLELGIRQKFTRPYRPQTNGKAERFIQSALREWAYGIAYNHSTERTQMLAKWQHHYNWHRPHQG 224
Cdd:PRK09409  196 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSA 275

                          90       100
                  ....*....|....*....|....*.
gi 2111020582 225 IGGVPPISRL-----NAASDNNVLTL 245
Cdd:PRK09409  276 LGYRSPREYLrqracNGLSDNRCLEI 301
COG2512 COG2512
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ...
 5-39 9.82e-03

Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];


Pssm-ID: 442002 [Multi-domain]  Cd Length: 80  Bit Score: 34.50  E-value: 9.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2111020582   5 KALAIVELRRRRLTQSRIAASLCVSESTVSRVLSR 39
Cdd:COG2512    19 RVLELLRENGGRMTQSEIVKETGWSKSKVSRLLSR 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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