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Conserved domains on  [gi|2107542856|ref|WP_225603029|]
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VCBS domain-containing protein, partial [Pseudomonas sp. PDM07]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cadherin_4 pfam17803
Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains ...
 12-85 2.77e-07

Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains found in extracelullar proteins.


:

Pssm-ID: 465514 [Multi-domain]  Cd Length: 71  Bit Score: 43.33  E-value: 2.77e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2107542856 12 QQVTVTVTGSNDAPVLSfangNDAGAVQEDTTLSVSGQFSSSDIDHAATATWSINGSATGSYGSIAVDSTGQWT 85
Cdd:pfam17803  1 ATVTITVTGVNDAPVAV----DDTATVDEDTPVTITGNVLANDTDVDGDTLTVTSVTGAPAYGTLTLNADGSFT 70
 
Name Accession Description Interval E-value
Cadherin_4 pfam17803
Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains ...
 12-85 2.77e-07

Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains found in extracelullar proteins.


Pssm-ID: 465514 [Multi-domain]  Cd Length: 71  Bit Score: 43.33  E-value: 2.77e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2107542856 12 QQVTVTVTGSNDAPVLSfangNDAGAVQEDTTLSVSGQFSSSDIDHAATATWSINGSATGSYGSIAVDSTGQWT 85
Cdd:pfam17803  1 ATVTITVTGVNDAPVAV----DDTATVDEDTPVTITGNVLANDTDVDGDTLTVTSVTGAPAYGTLTLNADGSFT 70
 
Name Accession Description Interval E-value
Cadherin_4 pfam17803
Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains ...
 12-85 2.77e-07

Bacterial cadherin-like domain; This entry contains numerous bacterial cadherin-like domains found in extracelullar proteins.


Pssm-ID: 465514 [Multi-domain]  Cd Length: 71  Bit Score: 43.33  E-value: 2.77e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2107542856 12 QQVTVTVTGSNDAPVLSfangNDAGAVQEDTTLSVSGQFSSSDIDHAATATWSINGSATGSYGSIAVDSTGQWT 85
Cdd:pfam17803  1 ATVTITVTGVNDAPVAV----DDTATVDEDTPVTITGNVLANDTDVDGDTLTVTSVTGAPAYGTLTLNADGSFT 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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