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Conserved domains on  [gi|2105566052|ref|WP_225307023|]
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transposase [Xanthomonas hortorum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_Tn3 super family cl46769
Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, ...
 1-34 1.60e-05

Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.


The actual alignment was detected with superfamily member COG4644:

Pssm-ID: 481109  Cd Length: 490  Bit Score: 38.85  E-value: 1.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2105566052   1 MDANKLAAACRDIINSCAGLQLPKCWGDGKSAAA 34
Cdd:COG4644   147 IREETLRAANAAIVNAQHRLPLAALWGDGTTASS 180
 
Name Accession Description Interval E-value
COG4644 COG4644
Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
1-34 1.60e-05

Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];


Pssm-ID: 443682  Cd Length: 490  Bit Score: 38.85  E-value: 1.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2105566052   1 MDANKLAAACRDIINSCAGLQLPKCWGDGKSAAA 34
Cdd:COG4644   147 IREETLRAANAAIVNAQHRLPLAALWGDGTTASS 180
DDE_Tnp_Tn3 pfam01526
Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, ...
 5-34 2.71e-05

Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.


Pssm-ID: 426307  Cd Length: 389  Bit Score: 38.26  E-value: 2.71e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 2105566052   5 KLAAACRDIINSCAGLQLPKCWGDGKSAAA 34
Cdd:pfam01526  73 TLRAANAAIVNAQARLPLARLWGDGTTASS 102
 
Name Accession Description Interval E-value
COG4644 COG4644
Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];
1-34 1.60e-05

Transposase and inactivated derivatives, TnpA family [Mobilome: prophages, transposons];


Pssm-ID: 443682  Cd Length: 490  Bit Score: 38.85  E-value: 1.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2105566052   1 MDANKLAAACRDIINSCAGLQLPKCWGDGKSAAA 34
Cdd:COG4644   147 IREETLRAANAAIVNAQHRLPLAALWGDGTTASS 180
DDE_Tnp_Tn3 pfam01526
Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, ...
 5-34 2.71e-05

Tn3 transposase DDE domain; This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.


Pssm-ID: 426307  Cd Length: 389  Bit Score: 38.26  E-value: 2.71e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 2105566052   5 KLAAACRDIINSCAGLQLPKCWGDGKSAAA 34
Cdd:pfam01526  73 TLRAANAAIVNAQARLPLARLWGDGTTASS 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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