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Conserved domains on  [gi|2030743374|ref|WP_211180520|]
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MULTISPECIES: protein YsgD [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YsgD_CorL super family cl49309
YsgD/CorL family protein;
1-18 5.48e-03

YsgD/CorL family protein;


The actual alignment was detected with superfamily member NF041266:

Pssm-ID: 469166  Cd Length: 18  Bit Score: 28.76  E-value: 5.48e-03
                         10
                 ....*....|....*...
gi 2030743374  1 MDTPSRYWLTILSSRINS 18
Cdd:NF041266   1 MDTPSRYWLTYLSSRYNS 18
 
Name Accession Description Interval E-value
YsgD_CorL NF041266
YsgD/CorL family protein;
1-18 5.48e-03

YsgD/CorL family protein;


Pssm-ID: 469166  Cd Length: 18  Bit Score: 28.76  E-value: 5.48e-03
                         10
                 ....*....|....*...
gi 2030743374  1 MDTPSRYWLTILSSRINS 18
Cdd:NF041266   1 MDTPSRYWLTYLSSRYNS 18
 
Name Accession Description Interval E-value
YsgD_CorL NF041266
YsgD/CorL family protein;
1-18 5.48e-03

YsgD/CorL family protein;


Pssm-ID: 469166  Cd Length: 18  Bit Score: 28.76  E-value: 5.48e-03
                         10
                 ....*....|....*...
gi 2030743374  1 MDTPSRYWLTILSSRINS 18
Cdd:NF041266   1 MDTPSRYWLTYLSSRYNS 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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