|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
10-485 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 718.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 10 SYGYAREHGIV---MADEQIYI--RENTPLSAVLEMQRMIHRPFAPVTLSAEAFDEMLSRIWQQSSGMsQQIMEDMDADi 84
Cdd:COG2804 82 PEELARRHRVLplrLEGGTLTVamADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSI-EELLEELAED- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 85 dlmaLTEEIPDNEDLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRI 164
Cdd:COG2804 160 ----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRI 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 165 KVMAKLDIAEKRLPQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGI 244
Cdd:COG2804 236 KIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGI 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSE 324
Cdd:COG2804 316 ILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 325 TAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQEVELTPQEAEMFTFLPN 404
Cdd:COG2804 396 TAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 405 P--PERVWGPGGCEKCRNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILRKS-TRSLRQNGLLKVVQGITSLDEV 481
Cdd:COG2804 476 ElaPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEgMRTLREDGLEKVLQGITTLEEV 555
|
....
gi 1905943828 482 MRVT 485
Cdd:COG2804 556 LRVT 559
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
10-485 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 668.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 10 SYGYAREHGIVMADE-----QIYIRENTPLSAVLEMQRMIHRPFAPVTLSAEAFDEMLSRIWQQSSGMSQQIMEDMDADI 84
Cdd:TIGR02533 5 PIGFAKQSRVLPLSEhdgtlVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEIEGED 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 85 DLMALTEEIPDNEDLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRI 164
Cdd:TIGR02533 85 DLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 165 KVMAKLDIAEKRLPQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGI 244
Cdd:TIGR02533 165 KIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGI 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSE 324
Cdd:TIGR02533 245 ILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 325 TAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQEVELTPQEAEMFTFLPN 404
Cdd:TIGR02533 325 TAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 405 PPERVWGPGGCEKCRNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILR-KSTRSLRQNGLLKVVQGITSLDEVMR 483
Cdd:TIGR02533 405 GPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARaAGMRTLRDDGLRKVLAGITTIEEVLR 484
|
..
gi 1905943828 484 VT 485
Cdd:TIGR02533 485 VT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
98-485 |
1.09e-160 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 463.63 E-value: 1.09e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 98 DLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRL 177
Cdd:PRK10436 74 PVADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 178 PQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGIILVTGPTGSGKST 257
Cdd:PRK10436 154 PQDGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTV 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 258 TLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGH 337
Cdd:PRK10436 234 TLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGH 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 338 LVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQeveltPQEAEmfTFLPN----PPERVWGPG 413
Cdd:PRK10436 314 LVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQ-----QASEP--IHLPPniwpGPLPHWQAV 386
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1905943828 414 GCEKCrNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILRKS-TRSLRQNGLLKVVQGITSLDEVMRVT 485
Cdd:PRK10436 387 GCEHC-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQgMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
113-381 |
3.41e-137 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 396.27 E-value: 3.41e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 113 NAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRLPQDGRISLRIGKRAI 192
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 193 DVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRN 272
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 273 ILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAV 352
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 1905943828 353 TRLRDMGLESFLIGSSLLGVVAQRLVRRL 381
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
113-378 |
2.37e-97 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 294.36 E-value: 2.37e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 113 NAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRLPQDGRISLRIGKRAI 192
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 193 DVRVSTIPSQYG-ERVVMRLL-DKSKMKMDLnqlgLSEQDLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQ 270
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 271 rNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASG 350
Cdd:NF041000 157 -QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*...
gi 1905943828 351 AVTRLRDMGLESFLIGSSLLGVVAQRLV 378
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
234-380 |
2.55e-89 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 269.74 E-value: 2.55e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 234 MRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPD 313
Cdd:cd01129 3 LRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDPD 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1905943828 314 VVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRR 380
Cdd:cd01129 83 IIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
241-320 |
7.10e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.83 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 241 PHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTV--EDPIEYELEGVGQTQVNPRVDMTF----ARGLRAILRQ-DPD 313
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKlKPD 80
|
....*..
gi 1905943828 314 VVMVGEI 320
Cdd:smart00382 81 VLILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
10-485 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 718.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 10 SYGYAREHGIV---MADEQIYI--RENTPLSAVLEMQRMIHRPFAPVTLSAEAFDEMLSRIWQQSSGMsQQIMEDMDADi 84
Cdd:COG2804 82 PEELARRHRVLplrLEGGTLTVamADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSI-EELLEELAED- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 85 dlmaLTEEIPDNEDLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRI 164
Cdd:COG2804 160 ----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRI 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 165 KVMAKLDIAEKRLPQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGI 244
Cdd:COG2804 236 KIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGI 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSE 324
Cdd:COG2804 316 ILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 325 TAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQEVELTPQEAEMFTFLPN 404
Cdd:COG2804 396 TAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 405 P--PERVWGPGGCEKCRNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILRKS-TRSLRQNGLLKVVQGITSLDEV 481
Cdd:COG2804 476 ElaPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEgMRTLREDGLEKVLQGITTLEEV 555
|
....
gi 1905943828 482 MRVT 485
Cdd:COG2804 556 LRVT 559
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
10-485 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 668.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 10 SYGYAREHGIVMADE-----QIYIRENTPLSAVLEMQRMIHRPFAPVTLSAEAFDEMLSRIWQQSSGMSQQIMEDMDADI 84
Cdd:TIGR02533 5 PIGFAKQSRVLPLSEhdgtlVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEIEGED 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 85 DLMALTEEIPDNEDLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRI 164
Cdd:TIGR02533 85 DLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 165 KVMAKLDIAEKRLPQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGI 244
Cdd:TIGR02533 165 KIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGI 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSE 324
Cdd:TIGR02533 245 ILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 325 TAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQEVELTPQEAEMFTFLPN 404
Cdd:TIGR02533 325 TAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 405 PPERVWGPGGCEKCRNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILR-KSTRSLRQNGLLKVVQGITSLDEVMR 483
Cdd:TIGR02533 405 GPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARaAGMRTLRDDGLRKVLAGITTIEEVLR 484
|
..
gi 1905943828 484 VT 485
Cdd:TIGR02533 485 VT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
57-486 |
7.85e-180 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 516.11 E-value: 7.85e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 57 AFDEMLSRIWQQSSGMSQQIMEDMDaDIDLMALTEEIPDNEDLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTL 136
Cdd:TIGR02538 131 LIEKYYGGSDSLAKELGDEDIGDLE-ELDVDAIDDEGPDDIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSY 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 137 SIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRLPQDGRISLRIGK-RAIDVRVSTIPSQYGERVVMRLLDKS 215
Cdd:TIGR02538 210 RVRFRIDGILHEVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKsKAIDFRVSTLPTLFGEKVVLRILDSS 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 216 KMKMDLNQLGLSEQDLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPR 295
Cdd:TIGR02538 290 AAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPK 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 296 VDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQ 375
Cdd:TIGR02538 370 IGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQ 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 376 RLVRRLCPHCKQEVELTPQEAEMFTFlpnPPE-----RVWGPGGCEKCRNSGYAGRAGIHELLVMDPELRRAINDNLDEM 450
Cdd:TIGR02538 450 RLARRLCSHCKAPEEVPAEALLELGF---TQEdladlKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNAL 526
|
410 420 430
....*....|....*....|....*....|....*..
gi 1905943828 451 SMEPILRK-STRSLRQNGLLKVVQGITSLDEVMRVTT 486
Cdd:TIGR02538 527 QIAELAQKeGMRTLRRSGLLKVKQGVTSLEEVLRVTV 563
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
98-485 |
1.09e-160 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 463.63 E-value: 1.09e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 98 DLLENDENSPVIRLINAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRL 177
Cdd:PRK10436 74 PVADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 178 PQDGRISLRIGKRAIDVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGIILVTGPTGSGKST 257
Cdd:PRK10436 154 PQDGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTV 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 258 TLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGH 337
Cdd:PRK10436 234 TLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGH 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 338 LVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRRLCPHCKQeveltPQEAEmfTFLPN----PPERVWGPG 413
Cdd:PRK10436 314 LVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQ-----QASEP--IHLPPniwpGPLPHWQAV 386
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1905943828 414 GCEKCrNSGYAGRAGIHELLVMDPELRRAINDNLDEMSMEPILRKS-TRSLRQNGLLKVVQGITSLDEVMRVT 485
Cdd:PRK10436 387 GCEHC-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQgMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
113-381 |
3.41e-137 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 396.27 E-value: 3.41e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 113 NAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRLPQDGRISLRIGKRAI 192
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 193 DVRVSTIPSQYGERVVMRLLDKSKMKMDLNQLGLSEQDLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRN 272
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 273 ILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAV 352
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 1905943828 353 TRLRDMGLESFLIGSSLLGVVAQRLVRRL 381
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
113-378 |
2.37e-97 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 294.36 E-value: 2.37e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 113 NAILGEAVKENASDIHIETFEKTLSIRFRVDGVLQSILQPARKLAPLLVSRIKVMAKLDIAEKRLPQDGRISLRIGKRAI 192
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 193 DVRVSTIPSQYG-ERVVMRLL-DKSKMKMDLnqlgLSEQDLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQ 270
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 271 rNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASG 350
Cdd:NF041000 157 -QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*...
gi 1905943828 351 AVTRLRDMGLESFLIGSSLLGVVAQRLV 378
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
234-380 |
2.55e-89 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 269.74 E-value: 2.55e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 234 MRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPD 313
Cdd:cd01129 3 LRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDPD 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1905943828 314 VVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESFLIGSSLLGVVAQRLVRR 380
Cdd:cd01129 83 IIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
112-483 |
3.31e-66 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 216.88 E-value: 3.31e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 112 INAILGEAVKENASDIHIETFEKtlsIRFRVDGVLQSIlqparKLAPLLVSRIKVMAKLDIAEKRLPQ-------DGRIS 184
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTVGSP---PMLRIDGELVPL-----DDPPLTPEDLEALLKEILTEEQRERleeegelDFSYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 185 LRIGKRaidVRVSTIPSQYGERVVMRLLdkSKMKMDLNQLGLSEQdlnyMRGLIDKPHGIILVTGPTGSGKSTTLYAVLS 264
Cdd:COG2805 77 LPGLGR---FRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLPPV----LKELAELPRGLVLVTGPTGSGKSTTLAAMID 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 265 SLDRNQ-RNILTVEDPIEYELEG----VGQTQVNPRVDmTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLV 339
Cdd:COG2805 148 YINETRaKHIITIEDPIEFVHKHkkslINQREVGRDTP-SFANALRAALREDPDVILVGEMRDLETIEAALTAAETGHLV 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 340 MSTLHTNSASGAVTRLRDMglesF----------LIGSSLLGVVAQRLVRRLcphckqeveltpqeaemftflpnpperv 409
Cdd:COG2805 227 FATLHTNSAAQTIDRIIDV----FppeeqaqirsQLAESLRGVISQRLLPRA---------------------------- 274
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1905943828 410 wgpGGcekcrnsgyAGRAGIHELLVMDPELRRAI-NDNLDEM--SMEPILRKSTRSLRQNGLLKVVQGITSLDEVMR 483
Cdd:COG2805 275 ---DG---------GGRVAAREILVNTPAVRNLIrEGKTHQIpsLIQTGKKLGMQTMDQSLAELVKEGLITEETALA 339
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
112-446 |
4.60e-56 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 190.22 E-value: 4.60e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 112 INAILGEAVKENASDIHIETFEKTlsiRFRVDGVLQSILQPaRKLAPLLVSRIKVM---AKLDIAEKRLPQDGRISLRIG 188
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTAGAPP---AMRIDGDLVRIEFE-PLTPEDTQKLAREIlseKQREEFEENGELDFSFSLPGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 189 KRaidVRVSTIPSQYGERVVMRLLDKSKMKMDlnQLGLseqdLNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDR 268
Cdd:TIGR01420 78 GR---FRVNAFYQRGGVALVLRLIPSKIPTFE--ELGL----PPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 269 NQ-RNILTVEDPIEYELEGVgQTQVNPR---VD-MTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTL 343
Cdd:TIGR01420 149 NKaYHIITIEDPIEYVHTNK-RSLINQRevgEDtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 344 HTNSASGAVTRLRDMGLES------FLIGSSLLGVVAQRLVRRlcphckqeveltpqeaemftflpnppervwgpggcek 417
Cdd:TIGR01420 228 HTNSAAQTIERIIDVFPAEeqeqirTQLAESLVAIISQRLLPK------------------------------------- 270
|
330 340
....*....|....*....|....*....
gi 1905943828 418 crnSGYAGRAGIHELLVMDPELRRAINDN 446
Cdd:TIGR01420 271 ---ADGGGRVLAVEILINTPAVRNLIREG 296
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
220-380 |
1.64e-50 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 171.57 E-value: 1.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 220 DLNQLGLSEQdlnyMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQ-RNILTVEDPIEYELEG----VGQTQVNP 294
Cdd:cd01131 3 TFEELGLPPV----LKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETRsKHIITIEDPIEFVHKHkkslINQREVGR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 295 RVDmTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMglesF----------L 364
Cdd:cd01131 79 DTE-SFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV----FppeqqeqvriQ 153
|
170
....*....|....*.
gi 1905943828 365 IGSSLLGVVAQRLVRR 380
Cdd:cd01131 154 LASSLRGVISQRLLPK 169
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
234-381 |
1.79e-50 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 169.88 E-value: 1.79e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 234 MRGLIDKPhGIILVTGPTGSGKSTTLYAVLSSLDRnQRNILTVEDPIEYEL---EGVGQTQVNPRVdmTFARGLRAILRQ 310
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFkhhKNYTQLFFGGNI--TSADCLKSCLRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 311 DPDVVMVGEIRDsETAQIAVQASLTGH-LVMSTLHTNSASGAVTRLRDMG------------LESFLIGSSLLGVVAQRL 377
Cdd:cd19477 79 RPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINH 157
|
....
gi 1905943828 378 VRRL 381
Cdd:cd19477 158 HKQC 161
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
243-379 |
1.33e-37 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 135.97 E-value: 1.33e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 243 GIILVTGPTGSGKSTTLYAVLSSL---DRNQRNILTVEDPIEYELEGVG-------QTQVnPRVDMTFARGLRAILRQDP 312
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYIlenDPPDRKIITYEDPIEFVYDGIKskhsiivQSQI-PRHFKSFAKAVREALRRKP 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1905943828 313 DVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDM--GLESFLIGSSLLGV----VAQRLVR 379
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLfpPEERDAAAYDLLSTlrfiIVQRLVR 163
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
220-380 |
2.58e-34 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 132.53 E-value: 2.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 220 DLNQLGLSEQdlnyMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRN-ILTVEDPIEYelegVGQTQ---VNPR 295
Cdd:COG5008 105 TLDELGLPPV----LKDLIMEKRGLVLFVGATGSGKSTTLAAMIDHRNENSSGhILTIEDPIEF----VHKHKksiVTQR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 296 ---VD-MTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTR-------------LRDM 358
Cdd:COG5008 177 evgVDtESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRiinffpeerrpqlLMDL 256
|
170 180
....*....|....*....|..
gi 1905943828 359 GLesfligsSLLGVVAQRLVRR 380
Cdd:COG5008 257 SL-------NLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
220-489 |
1.70e-27 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 113.36 E-value: 1.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 220 DLNQLGLsEQDLnyMRGLIDKpHGIILVTGPTGSGKSTTLYAVLSS-LDRNQ-RNILTVEDPIEYELEGVG------QTQ 291
Cdd:TIGR02525 131 DLKQMGI-EPDL--FNSLLPA-AGLGLICGETGSGKSTLAASIYQHcGETYPdRKIVTYEDPIEYILGSPDdllppaQSQ 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 292 VNPRVDmTFARGLRAILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVMSTLHTNSASGAVTRLRDMGLESF--LIGSSL 369
Cdd:TIGR02525 207 IGRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMreAAAFDL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 370 LGVVAQRLVRRLCPhckqeveltpqeaemftflpnppervwgpggcekcRNSGyaGRAGIHELLVMDPELRRAIND---- 445
Cdd:TIGR02525 286 LSILQYIIVQRLLR-----------------------------------TTDG--KRQAVREYIVFDDSLRRKLYDvdys 328
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1905943828 446 NLDEMsMEPILRKSTRSLRQNGLLKVVQGITSLDEVMRVTTTGQ 489
Cdd:TIGR02525 329 KWGRY-IDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAME 371
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
245-362 |
8.75e-23 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 95.30 E-value: 8.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRnILTVED------------PIEYELEGVGQTQVnprvdmTFARGLRAILRQDP 312
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDER-IVTIEDtrelqlphpnvvHLLTRPGGGEKGEV------TMADLLKAALRMRP 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1905943828 313 DVVMVGEIRDSEtAQIAVQASLTGHL-VMSTLHTNSASGAVTRLRDMGLES 362
Cdd:cd01130 88 DRIIVGEVRGGE-AYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEA 137
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
242-380 |
4.11e-21 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 95.92 E-value: 4.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 242 HGIILVTGPTGSGKSTTLYAVLSSLDRNQRnILTVEDPIEYEL-----------EGVGQTQVnpRVDMtFARgLRAILRQ 310
Cdd:COG0630 290 GKSVLVAGGTASGKTTLLNALLSFIPPDAK-IVTIEDTRELNLphenwislvtrESFGGEEG--DVTM-FDL-LKAALRQ 364
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1905943828 311 DPDVVMVGEIRDSEtAQIAVQASLTGHLVMSTLHTNSASGAVTRLRD--MGLESFLIgSSLLGVVAQRLVRR 380
Cdd:COG0630 365 RPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLL-QALDLVVFQKRVRV 434
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
245-419 |
1.26e-17 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 84.45 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRnILTVEDpiEYEL-----------------EGVGQtqvnprVDMtfARGLRAI 307
Cdd:COG4962 185 ILVSGGTGSGKTTLLNALSGFIPPDER-IVTIED--AAELqlqhphvvrletrppnvEGAGE------VTL--RDLVRNA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 308 LRQDPDVVMVGEIRDSEtAQIAVQASLTGHL-VMSTLHTNSASGAVTRLRDMGLESF----------LIGSSLLGVVAQR 376
Cdd:COG4962 254 LRMRPDRIIVGEVRGAE-ALDMLQAMNTGHDgSMSTLHANSARDALARLETLALMAGenlpreavrrQIASAIDLVVHLE 332
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1905943828 377 LVRRLCPHCKQEVELTPQEAEMFT----FLPNPPERVWGPGGCEKCR 419
Cdd:COG4962 333 RLRDGRRRVTEIAEVTGMEGGRVVlqpiFRFDPGGLDAAGGVRPRFL 379
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
240-356 |
8.49e-11 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 63.22 E-value: 8.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 240 KPHGIILVTGPTGSGKSTTLYAVLSSL---DRNQRnILTVEDPIEYELEGVGQTQVNPRVDMTFARGLRAILRQDPDVVM 316
Cdd:PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMviqDPTER-VFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRIL 224
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1905943828 317 VGEIRDSETAQIaVQASLTGHL-VMSTLHTNSASGAVTRLR 356
Cdd:PRK13894 225 VGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRLK 264
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
245-361 |
5.45e-08 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 54.42 E-value: 5.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRN--ILTVEDPIEYEL--EGVGQTQVNPRVDMtfARGLRAILRQDPDVVMVGEI 320
Cdd:PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASAPEdrLVILEDTAEIQCaaENAVALHTSDTVDM--ARLLKSTMRLRPDRIIVGEV 224
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1905943828 321 RDSeTAQIAVQASLTGHL-VMSTLHTNSASGAVTRLRDMGLE 361
Cdd:PRK13833 225 RDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAE 265
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
245-344 |
2.56e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 49.51 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRnILTVEDPIE------------YELEGVGQTQVnprvdmTFARGLRAILRQDP 312
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQER-LITIEDTLElviphenhvrllYSKNGAGLGAV------TAEHLLQASLRMRP 237
|
90 100 110
....*....|....*....|....*....|...
gi 1905943828 313 DVVMVGEIRDsETAQIAVQASLTGHL-VMSTLH 344
Cdd:PRK13851 238 DRILLGEMRD-DAAWAYLSEVVSGHPgSISTIH 269
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
241-320 |
7.10e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.83 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 241 PHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTV--EDPIEYELEGVGQTQVNPRVDMTF----ARGLRAILRQ-DPD 313
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKlKPD 80
|
....*..
gi 1905943828 314 VVMVGEI 320
Cdd:smart00382 81 VLILDEI 87
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
245-358 |
1.70e-05 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 46.67 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905943828 245 ILVTGPTGSGKSTTLYAVLSSLDRNQRnILTVEDPIEYELEGvgqtqvNP-RVDMTFARG------------LRAILRQD 311
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIER-LITVEDAREIVLSN------HPnRVHLLASKGgqgrakvttqdlIEACLRLR 235
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1905943828 312 PDVVMVGEIRDSEtAQIAVQASLTGHL-VMSTLHTNSASGAVTRLRDM 358
Cdd:PRK13900 236 PDRIIVGELRGAE-AFSFLRAINTGHPgSISTLHADSPAMAIEQLKLM 282
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
231-269 |
2.23e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 42.85 E-value: 2.23e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1905943828 231 LNYMRGLIDKPHGIILVTGPTGSGKSTTLYAVLSSLDRN 269
Cdd:COG3267 32 LARLEYALAQGGGFVVLTGEVGTGKTTLLRRLLERLPDD 70
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
240-271 |
6.17e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 37.96 E-value: 6.17e-04
10 20 30
....*....|....*....|....*....|..
gi 1905943828 240 KPHGIILVTGPTGSGKSTTLYAVLSSLDRNQR 271
Cdd:pfam13555 20 DPRGNTLLTGPSGSGKSTLLDAIQTLLVPAKR 51
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
238-279 |
9.48e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 9.48e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1905943828 238 IDKPHGIILVTGPTGSGKSTTLYAVLSSLDRNQRNILTVEDP 279
Cdd:pfam13401 1 IRFGAGILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLP 42
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
238-292 |
1.76e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.40 E-value: 1.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1905943828 238 IDKPHGIILVTGPTGSGKSTTLYAVLSSL------DRNQRNILTVEDPIEYELEGVGQTQV 292
Cdd:pfam13476 14 IDFSKGLTLITGPNGSGKTTILDAIKLALygktsrLKRKSGGGFVKGDIRIGLEGKGKAYV 74
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
238-262 |
7.93e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 37.68 E-value: 7.93e-03
10 20
....*....|....*....|....*
gi 1905943828 238 IDKPHGIILVTGPTGSGKSTTLYAV 262
Cdd:COG0419 19 IDFDDGLNLIVGPNGAGKSTILEAI 43
|
|
| |
