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Conserved domains on  [gi|1862014528|ref|WP_176324440|]
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transposase, partial [Burkholderia vietnamiensis]

Protein Classification

IS110 family transposase( domain architecture ID 10479943)

IS110 family transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
20-168 8.36e-53

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


:

Pssm-ID: 460249  Cd Length: 155  Bit Score: 166.25  E-value: 8.36e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  20 KGHHHAVALDRNGKRLYNKALPNDEAKLRALIAEL-KTHGRLLFVVDQPSTIGALPVAVARAEGVLVAYLPGLAMRRIAD 98
Cdd:pfam01548   7 KKHHHACVIDPDGKVLLSRRFPNDEEGLRALLAKLlASAGEVLVGVEATGHYGALLVAFLLAAGFQVVYVNPLAVKRLRD 86
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  99 LHAGEAKTDARDAAIIAEAARsMPHTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQIHP 168
Cdd:pfam01548  87 LYIRGAKTDAKDAFVIADLAR-TRGDLRPLRPDDEAYRELRQLTRYREDLVAERTRLKNRLRALLDQIFP 155
 
Name Accession Description Interval E-value
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
20-168 8.36e-53

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 166.25  E-value: 8.36e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  20 KGHHHAVALDRNGKRLYNKALPNDEAKLRALIAEL-KTHGRLLFVVDQPSTIGALPVAVARAEGVLVAYLPGLAMRRIAD 98
Cdd:pfam01548   7 KKHHHACVIDPDGKVLLSRRFPNDEEGLRALLAKLlASAGEVLVGVEATGHYGALLVAFLLAAGFQVVYVNPLAVKRLRD 86
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  99 LHAGEAKTDARDAAIIAEAARsMPHTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQIHP 168
Cdd:pfam01548  87 LYIRGAKTDAKDAFVIADLAR-TRGDLRPLRPDDEAYRELRQLTRYREDLVAERTRLKNRLRALLDQIFP 155
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
19-165 1.47e-21

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 90.08  E-value: 1.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  19 GKGHHHAVALDRNGKRLYNKALPNDEAKLRALIAELKTHG-RLLFVVDQPSTIGALPVAVARAEGVLVAYLPGLAMRRIA 97
Cdd:NF033542    7 AKEVFDVAVVDASGGEVLRKKFKNTKAGREALLAWLAKLApPCVVVMEATGGYHAWLRELLALGGFPVVLVNPRHVKPFR 86
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1862014528  98 DlhAGEAKTDARDAAIIAEAARSMPhtLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQ 165
Cdd:NF033542   87 K--GARAKTDRIDAEAIAEAARRGR--MRFVPVKTEEQQALRALHRRREQLVKERTALKNRLRGLLAE 150
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
20-165 3.34e-13

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 66.87  E-value: 3.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  20 KGHHHAVALDRNGKRLY-NKALPNDEAKLRALIAELKTHGRLLFVVDQPSTIGALPVAVA-RAEGVLVAYLPGLAMRRIA 97
Cdd:COG3547    13 KDTFDVAVVDEDGKVVLkVFRFANDRAGLLALLAWLKKLGPPCLVGMEATGGYHHWLARFlAAAGHEVVVVNPRQVKAFR 92
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1862014528  98 DLHAGeaKTDARDAAIIAEAARSMphTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQ 165
Cdd:COG3547    93 KGRRA--KTDRIDAEAIARAARRG--RLRPVPVPSEEQQALRALVRRREQLVKERTALKNRLRGLLLE 156
 
Name Accession Description Interval E-value
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
20-168 8.36e-53

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 166.25  E-value: 8.36e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  20 KGHHHAVALDRNGKRLYNKALPNDEAKLRALIAEL-KTHGRLLFVVDQPSTIGALPVAVARAEGVLVAYLPGLAMRRIAD 98
Cdd:pfam01548   7 KKHHHACVIDPDGKVLLSRRFPNDEEGLRALLAKLlASAGEVLVGVEATGHYGALLVAFLLAAGFQVVYVNPLAVKRLRD 86
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  99 LHAGEAKTDARDAAIIAEAARsMPHTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQIHP 168
Cdd:pfam01548  87 LYIRGAKTDAKDAFVIADLAR-TRGDLRPLRPDDEAYRELRQLTRYREDLVAERTRLKNRLRALLDQIFP 155
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
19-165 1.47e-21

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 90.08  E-value: 1.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  19 GKGHHHAVALDRNGKRLYNKALPNDEAKLRALIAELKTHG-RLLFVVDQPSTIGALPVAVARAEGVLVAYLPGLAMRRIA 97
Cdd:NF033542    7 AKEVFDVAVVDASGGEVLRKKFKNTKAGREALLAWLAKLApPCVVVMEATGGYHAWLRELLALGGFPVVLVNPRHVKPFR 86
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1862014528  98 DlhAGEAKTDARDAAIIAEAARSMPhtLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQ 165
Cdd:NF033542   87 K--GARAKTDRIDAEAIAEAARRGR--MRFVPVKTEEQQALRALHRRREQLVKERTALKNRLRGLLAE 150
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
20-165 3.34e-13

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 66.87  E-value: 3.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862014528  20 KGHHHAVALDRNGKRLY-NKALPNDEAKLRALIAELKTHGRLLFVVDQPSTIGALPVAVA-RAEGVLVAYLPGLAMRRIA 97
Cdd:COG3547    13 KDTFDVAVVDEDGKVVLkVFRFANDRAGLLALLAWLKKLGPPCLVGMEATGGYHHWLARFlAAAGHEVVVVNPRQVKAFR 92
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1862014528  98 DLHAGeaKTDARDAAIIAEAARSMphTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQ 165
Cdd:COG3547    93 KGRRA--KTDRIDAEAIARAARRG--RLRPVPVPSEEQQALRALVRRREQLVKERTALKNRLRGLLLE 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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