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Conserved domains on  [gi|1851076892|ref|WP_173559729|]
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tetratricopeptide repeat protein [Acetobacter thailandicus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
48-562 3.55e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.86  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  48 VDSGAF-LAGIAARSRGDDSEAARALRAASQADPANRDMATQAFVLSVLAGSPEAVElarreeqfagkeilssfvlgnha 126
Cdd:TIGR02917 361 DDPAALsLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI----------------------- 417
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 127 alkGDWQAAARYYQQGSQdpmAHLVLplLLAWCDQAE-HKAHAALDALSRIQGSVLSPFYTLhaALIAQLSGDSAEAGRL 205
Cdd:TIGR02917 418 ---ADLETAAQLDPELGR---ADLLL--ILSYLRSGQfDKALAAAKKLEKKQPDNASLHNLL--GAIYLGKGDLAKAREA 487
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 206 FAQAQHAMPGeDLLLARSYAAWCWQNGQRDKARELLRRMIDADP-----VLALAGKQFQ------------AEVSKFPVD 268
Cdd:TIGR02917 488 FEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPknlraILALAGLYLRtgneeeavawleKAAELNPQE 566
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 269 TSLQ-GLARAYVLtaflfQQQLRNAE---QEAMSPQAARQARFRLNEATRLMLS----------FALELDPHMSEALLMM 334
Cdd:TIGR02917 567 IEPAlALAQYYLG-----KGQLKKALailNEAADAAPDSPEAWLMLGRAQLAAGdlnkavssfkKLLALQPDSALALLLL 641
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 335 AEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQG 414
Cdd:TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 415 AFAAYDKAVN--------------LSRAGAPLRGVKK-EYW--------SLLFLRAVTSYELGNWPKAKADLKEALALQP 471
Cdd:TIGR02917 722 AIQAYRKALKrapssqnaiklhraLLASGNTAEAVKTlEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 472 DNPLLLNFLgySMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGE 551
Cdd:TIGR02917 802 DNAVVLNNL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
                         570
                  ....*....|.
gi 1851076892 552 VYWRMGRHREA 562
Cdd:TIGR02917 880 ALLATGRKAEA 890
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
48-562 3.55e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.86  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  48 VDSGAF-LAGIAARSRGDDSEAARALRAASQADPANRDMATQAFVLSVLAGSPEAVElarreeqfagkeilssfvlgnha 126
Cdd:TIGR02917 361 DDPAALsLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI----------------------- 417
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 127 alkGDWQAAARYYQQGSQdpmAHLVLplLLAWCDQAE-HKAHAALDALSRIQGSVLSPFYTLhaALIAQLSGDSAEAGRL 205
Cdd:TIGR02917 418 ---ADLETAAQLDPELGR---ADLLL--ILSYLRSGQfDKALAAAKKLEKKQPDNASLHNLL--GAIYLGKGDLAKAREA 487
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 206 FAQAQHAMPGeDLLLARSYAAWCWQNGQRDKARELLRRMIDADP-----VLALAGKQFQ------------AEVSKFPVD 268
Cdd:TIGR02917 488 FEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPknlraILALAGLYLRtgneeeavawleKAAELNPQE 566
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 269 TSLQ-GLARAYVLtaflfQQQLRNAE---QEAMSPQAARQARFRLNEATRLMLS----------FALELDPHMSEALLMM 334
Cdd:TIGR02917 567 IEPAlALAQYYLG-----KGQLKKALailNEAADAAPDSPEAWLMLGRAQLAAGdlnkavssfkKLLALQPDSALALLLL 641
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 335 AEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQG 414
Cdd:TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 415 AFAAYDKAVN--------------LSRAGAPLRGVKK-EYW--------SLLFLRAVTSYELGNWPKAKADLKEALALQP 471
Cdd:TIGR02917 722 AIQAYRKALKrapssqnaiklhraLLASGNTAEAVKTlEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 472 DNPLLLNFLgySMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGE 551
Cdd:TIGR02917 802 DNAVVLNNL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
                         570
                  ....*....|.
gi 1851076892 552 VYWRMGRHREA 562
Cdd:TIGR02917 880 ALLATGRKAEA 890
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
441-575 5.40e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.96  E-value: 5.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 441 SLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMV 520
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1851076892 521 ERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
440-556 2.50e-07

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 53.77  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 440 WSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPlllNFLGYSMT-EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWV 518
Cdd:PRK09782  576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPSAN---AYVARATIyRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1851076892 519 MVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRM 556
Cdd:PRK09782  653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
443-552 3.79e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.08  E-value: 3.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 443 LFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEqHEDLAEAERLLRKAVELDPDDAAI----------- 511
Cdd:cd24142     3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLE-LGDVEEAREVLLRAIELDPDGGYEkylylgqlsgg 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1851076892 512 RDSLGWVMVergdlkeGTQLLERAVAQTPEDPEVNYHLGEV 552
Cdd:cd24142    82 EEALQYYEK-------GIEILEEELQALQAASAEAEEEAEE 115
TPR_11 pfam13414
TPR repeat;
520-557 1.23e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 1.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1851076892 520 VERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMG 557
Cdd:pfam13414   5 YEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
543-575 6.27e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 6.27e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1851076892  543 PEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
48-562 3.55e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.86  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  48 VDSGAF-LAGIAARSRGDDSEAARALRAASQADPANRDMATQAFVLSVLAGSPEAVElarreeqfagkeilssfvlgnha 126
Cdd:TIGR02917 361 DDPAALsLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI----------------------- 417
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 127 alkGDWQAAARYYQQGSQdpmAHLVLplLLAWCDQAE-HKAHAALDALSRIQGSVLSPFYTLhaALIAQLSGDSAEAGRL 205
Cdd:TIGR02917 418 ---ADLETAAQLDPELGR---ADLLL--ILSYLRSGQfDKALAAAKKLEKKQPDNASLHNLL--GAIYLGKGDLAKAREA 487
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 206 FAQAQHAMPGeDLLLARSYAAWCWQNGQRDKARELLRRMIDADP-----VLALAGKQFQ------------AEVSKFPVD 268
Cdd:TIGR02917 488 FEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPknlraILALAGLYLRtgneeeavawleKAAELNPQE 566
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 269 TSLQ-GLARAYVLtaflfQQQLRNAE---QEAMSPQAARQARFRLNEATRLMLS----------FALELDPHMSEALLMM 334
Cdd:TIGR02917 567 IEPAlALAQYYLG-----KGQLKKALailNEAADAAPDSPEAWLMLGRAQLAAGdlnkavssfkKLLALQPDSALALLLL 641
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 335 AEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQG 414
Cdd:TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 415 AFAAYDKAVN--------------LSRAGAPLRGVKK-EYW--------SLLFLRAVTSYELGNWPKAKADLKEALALQP 471
Cdd:TIGR02917 722 AIQAYRKALKrapssqnaiklhraLLASGNTAEAVKTlEAWlkthpndaVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 472 DNPLLLNFLgySMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGE 551
Cdd:TIGR02917 802 DNAVVLNNL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
                         570
                  ....*....|.
gi 1851076892 552 VYWRMGRHREA 562
Cdd:TIGR02917 880 ALLATGRKAEA 890
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
441-575 5.40e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.96  E-value: 5.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 441 SLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMV 520
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1851076892 521 ERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
389-597 1.33e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 1.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 389 VKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLSRagaplrgvkkEYWSLLFLRAVTSYELGNWPKAKADLKEALA 468
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP----------DDAEALYNLGLAYLRLGRYEEALADYEQALE 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 469 LQPDNPLLLNFLGYSMTEQHeDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYH 548
Cdd:COG0457    71 LDPDDAEALNNLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1851076892 549 LGEVYWRMGRHREAVDHWNLALELKPEPRDEKLIRGALARAGNLPDKQA 597
Cdd:COG0457   150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
412-575 9.74e-21

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 96.60  E-value: 9.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 412 WQGAFAAYDKAVNLSRAGAPLRGVKKEYWSL---LFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQH 488
Cdd:COG3914    47 LLAALAEAAAAALLALAAGEAAAAAAALLLLaalLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 489 eDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNL 568
Cdd:COG3914   127 -RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205

                  ....*..
gi 1851076892 569 ALELKPE 575
Cdd:COG3914   206 ALELDPD 212
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
458-589 2.91e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 86.98  E-value: 2.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 458 KAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVA 537
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRL-GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1851076892 538 QTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPEPRDEKLIRGALARA 589
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
360-575 2.15e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 88.63  E-value: 2.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 360 LMPVAA----FKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLSragaplrgv 435
Cdd:COG2956     2 LLPVAAalgwYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD--------- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 436 kKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMtEQHEDLAEAERLLRKAVELDPDDAAIRDSL 515
Cdd:COG2956    73 -PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-EQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 516 GWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
332-597 5.57e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.48  E-value: 5.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 332 LMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKN 411
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 412 WQGAFAAYDKAVNLSRAGAplrgvkkeywSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGySMTEQHEDL 491
Cdd:COG2956    92 LDRAEELLEKLLELDPDDA----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA-ELYLEQGDY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 492 AEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALE 571
Cdd:COG2956   161 DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
                         250       260
                  ....*....|....*....|....*.
gi 1851076892 572 LKPEPRDEKLIRGALARAGNLPDKQA 597
Cdd:COG2956   241 LDPSDDLLLALADLLERKEGLEAALA 266
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
235-582 1.91e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 89.76  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 235 DKARELLRRMIDADPVLA---LAGKQFQAEVSKFPVDTSLQGLARAYVLT----AFLFQQQLRNAEQEAMSPQAARQ--- 304
Cdd:TIGR02917  80 RKALSLGYPKNQVLPLLArayLLQGKFQQVLDELPGKTLLDDEGAAELLAlrglAYLGLGQLELAQKSYEQALAIDPrsl 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 305 -----------ARFRLNEATRLmLSFALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDN 373
Cdd:TIGR02917 160 yaklglaqlalAENRFDEARAL-IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILI 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 374 ESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLsragAPlrgvkkEYWSLLFLRAVTSYEL 453
Cdd:TIGR02917 239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS----AP------EYLPALLLAGASEYQL 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 454 GNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLE 533
Cdd:TIGR02917 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1851076892 534 RAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPEPRDEKLI 582
Cdd:TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
364-571 3.27e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 3.27e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 364 AAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTeasrkNWQGAFAAYDKAVNLSRAGAPLRGVKK-EYWSL 442
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALA-----DLALALAAAALAAAALAAERIDRALALpDLAQL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 443 LFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVER 522
Cdd:COG4785    76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL-GDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1851076892 523 GDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWR--------------------MGRHREAVDHWNLALE 571
Cdd:COG4785   155 GRYELAIADLEKALELDPNDPERALWLYLAERKldpekalallledwatayllQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
326-549 1.46e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.04  E-value: 1.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 326 HMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNT 405
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 406 EASRKNWQGAFAAYDKAVNLSRAgapLRGVKKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMT 485
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRR---ALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1851076892 486 EQHeDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHL 549
Cdd:COG3914   158 RLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
189-505 8.40e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 8.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 189 AALIAQLSGDSAEAGRLFAQAQHAMPGED---LLLARSYaawcWQNGQRDKARELLRRMIDADPVLALAgkqfqaevskf 265
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVeahLALGNLY----RRRGEYDRAIRIHQKLLERDPDRAEA----------- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 266 pvdtsLQGLARAYvltafLFQQQLRNAEQeamspqaarqarfrlneatrlMLSFALELDPHMSEALLMMAEVQQDEGHPQ 345
Cdd:COG2956    79 -----LLELAQDY-----LKAGLLDRAEE---------------------LLEKLLELDPDDAEALRLLAEIYEQEGDWE 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 346 AARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNL 425
Cdd:COG2956   128 KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 426 SragaplrgvkKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFlgYSMTEQHEDLAEAERLLRKAVELD 505
Cdd:COG2956   208 D----------PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL--ADLLERKEGLEAALALLERQLRRH 275
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
284-572 3.50e-14

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 73.79  E-value: 3.50e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 284 LFQQQLRNAEQEAMSPQAARQARFRLNEATR--LMLSFALELDPHMSEA-LLMMAEVQQDEGHPQAARATLLRMPSGSPL 360
Cdd:COG3071    38 LLSKAAEHSEAPLLAYLLAARAAQALGDYERrdEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAGAPR 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 361 MPVAAFKLALIDNESDHLDEARDKLLALVKDNpelVLPVSELgnTEASRKNWQGAFAayDKAVNLSRAGAPLRGVKKEYW 440
Cdd:COG3071   118 HPQVLRLLLQAYRQLGDWEELLELLPALRKHK---ALSAEEA--QALERRAYLGLLR--QAARDAEALKALWKALPRAER 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 441 ---SLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLgysmTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGW 517
Cdd:COG3071   191 rdpELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYG----RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGR 266
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1851076892 518 VMVERGDLKEGTQLLERAVAQTPeDPEVNYHLGEVYWRMGRHREAVDHWNLALEL 572
Cdd:COG3071   267 LCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALAL 320
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
359-597 1.07e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 1.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 359 PLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLsragaplrgvKKE 438
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----------DPD 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 439 YWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWV 518
Cdd:COG0457    75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL-GRYDEAIEAYERALELDPDDADALYNLGIA 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1851076892 519 MVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPEPRDEKLIRGALARAGNLPDKQA 597
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
42-594 1.45e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 73.96  E-value: 1.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  42 TAANQKVDSGAFLAGIAArSRGDDSEAARALRAASQADPANRD-MATQAFVLSVLAGSPEAVELARREEQFAGKEILSSF 120
Cdd:TIGR02917 153 AIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDaLLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 121 VLGNHAALKGDWQAAARY----YQQGSQDPMAHLVLPLLlawcdQAEHKAHAalDALSRIQGSVLSPFYTLHAALIAQLS 196
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHadalLKKAPNSPLAHYLKALV-----DFQKKNYE--DARETLQDALKSAPEYLPALLLAGAS 304
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 197 ----GDSAEAGRLFAQAQHAMPgEDLLLARSYAAWCWQNGQRDKARELLRRMIDADPV----LALAGKQFQAevskfpvd 268
Cdd:TIGR02917 305 eyqlGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdpaaLSLLGEAYLA-------- 375
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 269 tslqglARAYVLTAFLFQQQLRNAEQEAMSpqAARQARFRL--NEATRLMLSF--ALELDPHMSEALLMMAEVQQDEGHP 344
Cdd:TIGR02917 376 ------LGDFEKAAEYLAKATELDPENAAA--RTQLGISKLsqGDPSEAIADLetAAQLDPELGRADLLLILSYLRSGQF 447
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 345 QAARATLLRM-------PSGSPLM---------------------------PVAAFKLALIDNESDHLDEARDKLLALVK 390
Cdd:TIGR02917 448 DKALAAAKKLekkqpdnASLHNLLgaiylgkgdlakareafekalsiepdfFPAAANLARIDIQEGNPDDAIQRFEKVLT 527
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 391 DNPE---LVLPVSEL----GNTEASRKNWQGAFA----AYDKAVNLSRA----GAPLRGV------------KKEYWSLL 443
Cdd:TIGR02917 528 IDPKnlrAILALAGLylrtGNEEEAVAWLEKAAElnpqEIEPALALAQYylgkGQLKKALailneaadaapdSPEAWLML 607
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 444 flrAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYsMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERG 523
Cdd:TIGR02917 608 ---GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD-AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1851076892 524 DLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPEPRDEKLIRGALARAGNLPD 594
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
486-578 1.83e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.35  E-value: 1.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 486 EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQlLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDH 565
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
                          90
                  ....*....|...
gi 1851076892 566 WNLALELKPEPRD 578
Cdd:COG3063    82 LERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
486-594 2.97e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.14  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 486 EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDH 565
Cdd:COG4783    15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALAL 94
                          90       100       110
                  ....*....|....*....|....*....|
gi 1851076892 566 WNLALELKPE-PRDEKLIRGALARAGNLPD 594
Cdd:COG4783    95 LEKALKLDPEhPEAYLRLARAYRALGRPDE 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
401-542 1.24e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 1.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 401 ELGNTEASRKNWQGAFAAYDKAVNLSragaplrgvkKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFL 480
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELD----------PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1851076892 481 GYSMTEQHeDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPED 542
Cdd:COG4783    79 GLALLKAG-DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
459-574 7.51e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 7.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 459 AKADLKEALALQPDNPLLLNFLGYSMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQ 538
Cdd:COG5010    38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1851076892 539 TPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKP 574
Cdd:COG5010   118 SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
316-575 2.15e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.55  E-value: 2.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 316 MLSFALELDPHMSEALLMMAEVQQDEGHPQAARATLlrmpsgSPLMPVAAFKLALIDNESDHL--DEARDKLLALVKDNP 393
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDL------TASCIIDGFRNEQSAQAVERLlkKFAESKAKEILETKP 255
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 394 ELVLPVSELGNTEASRKNwQGAFAAYDKAVNLSRAgaPLRGVKKEYWSLLFLRAVTSYELGN--WPKA--KADLKEALAL 469
Cdd:TIGR00990 256 ENLPSVTFVGNYLQSFRP-KPRPAGLEDSNELDEE--TGNGQLQLGLKSPESKADESYEEAAraFEKAldLGKLGEKEAI 332
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 470 QPDNPLLLNFLGYSMTEQHEDLaeaerllRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHL 549
Cdd:TIGR00990 333 ALNLRGTFKCLKGKHLEALADL-------SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405
                         250       260
                  ....*....|....*....|....*.
gi 1851076892 550 GEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPD 431
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
451-541 2.51e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 2.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 451 YELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERlLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQ 530
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-GRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
                          90
                  ....*....|.
gi 1851076892 531 LLERAVAQTPE 541
Cdd:COG3063    81 YLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
321-535 1.79e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 321 LELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVS 400
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 401 ELGNTEASRKNWQGAFAAYDKAVNLsragaplrgvKKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFL 480
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALEL----------DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1851076892 481 GYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERA 535
Cdd:COG0457   151 GIALEKL-GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
56-537 1.83e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.95  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  56 GIAARSRGDDSEAARALRAASQADPANRDmATQAFVLSVLAGSPEAVELARREEQFAGK--EILSSFVLGNHAALKGDWQ 133
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGR-ADLLLILSYLRSGQFDKALAAAKKLEKKQpdNASLHNLLGAIYLGKGDLA 482
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 134 AAARYYQQGSQDPMAHLVLPLLLAWCDQAEHKAHAALDALSRIQGSVLSPFYTLHA-ALIAQLSGDSAEAGRLFAQAQHA 212
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAlAGLYLRTGNEEEAVAWLEKAAEL 562
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 213 MPGED---LLLARSYAAwcwqNGQRDKARELLRRMIDADP-------VLA---LAGKQFQAEVSKFPVDTSLQGL-ARAY 278
Cdd:TIGR02917 563 NPQEIepaLALAQYYLG----KGQLKKALAILNEAADAAPdspeawlMLGraqLAAGDLNKAVSSFKKLLALQPDsALAL 638
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 279 VLTAFlFQQQLRNAEQEAMSPQAArqarfrlneatrlmlsfaLELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGS 358
Cdd:TIGR02917 639 LLLAD-AYAVMKNYAKAITSLKRA------------------LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 359 PLMPV---------------------------------AAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNT 405
Cdd:TIGR02917 700 PKAALgfelegdlylrqkdypaaiqayrkalkrapssqNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 406 EASRKNWQGAFAAYDKAVNLSRAGAPLRGvkkeywSLLFLravtsYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMT 485
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPDNAVVLN------NLAWL-----YLELKDPRALEYAERALKLAPNIPAILDTLGWLLV 848
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1851076892 486 EQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVA 537
Cdd:TIGR02917 849 EK-GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
380-512 3.80e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 3.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 380 EARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLsragaplrgvKKEYWSLLFLRAVTSYELGNWPKA 459
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----------DPDNADALLDLAEALLAAGDTEEA 70
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1851076892 460 KADLKEALALQPDNPLLLNFLGYSMtEQHEDLAEAERLLRKAVELDPDDAAIR 512
Cdd:COG4235    71 EELLERALALDPDNPEALYLLGLAA-FQQGDYAEAIAAWQKLLALLPADAPAR 122
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
247-500 5.24e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.24  E-value: 5.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 247 ADPVLALAGKQFQAEVSKFPVDTSLQGLARAYVLTAFLFQQQLRNAEQEAMSPQAARQARFRLNEATRLMLSFALELDPh 326
Cdd:COG3914     6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA- 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 327 mseallmmAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTE 406
Cdd:COG3914    85 --------ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 407 ASRKNWQGAFAAYDKAVNLsragaplrgvKKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFL--GYSM 484
Cdd:COG3914   157 RRLGRLEEAIAALRRALEL----------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLlfALRQ 226
                         250
                  ....*....|....*.
gi 1851076892 485 TEQHEDLAEAERLLRK 500
Cdd:COG3914   227 ACDWEVYDRFEELLAA 242
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
411-540 9.35e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 9.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 411 NWQGAFAAYDKAVNLSRAGAPLRGVKKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhED 490
Cdd:COG5010    25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS-GD 103
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1851076892 491 LAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTP 540
Cdd:COG5010   104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
468-584 1.90e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 468 ALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNY 547
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSL-GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1851076892 548 HLGEVYWRMGRHREAVDHWNLALELKPEPRDEKLIRG 584
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPERALWLY 182
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
380-575 7.86e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 7.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 380 EARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLSRagaplrGVKKEYwsllFLRAVTSYELGNWPKA 459
Cdd:TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP------RVTQSY----IKRASMNLELGDPDKA 384
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 460 KADLKEALALQPDNPLLLnflgYSMTEQH---EDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAV 536
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIY----YHRAQLHfikGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1851076892 537 AQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
320-585 1.41e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.70  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 320 ALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPV 399
Cdd:TIGR02917  48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAEL 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 400 SELGNTEASRKnwqGAFAAYDKAVNLSRAGAPLRGvkkeywSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNF 479
Cdd:TIGR02917 128 LALRGLAYLGL---GQLELAQKSYEQALAIDPRSL------YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 480 LGySMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRH 559
Cdd:TIGR02917 199 KG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277
                         250       260
                  ....*....|....*....|....*.
gi 1851076892 560 REAVDHWNLALELKPEPRDEKLIRGA 585
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGA 303
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
440-556 2.50e-07

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 53.77  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 440 WSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPlllNFLGYSMT-EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWV 518
Cdd:PRK09782  576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPSAN---AYVARATIyRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1851076892 519 MVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRM 556
Cdd:PRK09782  653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
486-595 1.65e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 486 EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDH 565
Cdd:COG3914    55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAA 134
                          90       100       110
                  ....*....|....*....|....*....|
gi 1851076892 566 WNLALELKPEPRDEKLIRGALARAGNLPDK 595
Cdd:COG3914   135 LRRALALNPDFAEAYLNLGEALRRLGRLEE 164
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
446-546 2.33e-06

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 50.68  E-value: 2.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 446 RAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGD- 524
Cdd:PRK09782  615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDm 693
                          90       100
                  ....*....|....*....|....*...
gi 1851076892 525 ------LKEGTQLLERAVAQTPEDPEVN 546
Cdd:PRK09782  694 aatqhyARLVIDDIDNQALITPLTPEQN 721
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
317-542 4.05e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.98  E-value: 4.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 317 LSFALELDPHMSEALLMMAEVQQDEGHPQAARATL---LRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALvkdNP 393
Cdd:TIGR00990 354 LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFdkaLKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DP 430
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 394 ELVLPVSELGNTEASRKNWQGAFAAYDKAVnlsRAGAPLRGVKKEYWSLL-----FLRAVTSYELgnwpkakadlkeALA 468
Cdd:TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEAPDVYNYYGELLldqnkFDEAIEKFDT------------AIE 495
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 469 LQPD-NPLLLNFL-----GYSMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERA--VAQTP 540
Cdd:TIGR00990 496 LEKEtKPMYMNVLplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAaeLARTE 575

                  ..
gi 1851076892 541 ED 542
Cdd:TIGR00990 576 GE 577
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
490-589 4.93e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.75  E-value: 4.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 490 DLAEAERLLRKAVELDPDDAAIRDS---LGWVMVERGDLKEGTQLLERAVAQTPED---PEVNYHLGEVYWRMGRHREAV 563
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKAR 87
                          90       100
                  ....*....|....*....|....*.
gi 1851076892 564 DHWNLALELKPEPRDEKLIRGALARA 589
Cdd:COG1729    88 ATLEELIKKYPDSEAAKEARARLARL 113
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
329-473 9.58e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 9.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 329 EALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEAS 408
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1851076892 409 RKNWQGAFAAYDKAVNLSragaplrgvkKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDN 473
Cdd:COG4783    85 AGDYDEALALLEKALKLD----------PEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
320-438 1.12e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 320 ALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPV 399
Cdd:COG4235     9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1851076892 400 SELGNTEASRKNWQGAFAAYDKAVNLSRAGAPLRGVKKE 438
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
27-358 3.04e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 47.39  E-value: 3.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892   27 AASVPELAQTqgkkiTAANQKvDSGAFLA-GIAARSRGDDSEAARALRAASQADP--ANRD-----MATQAFVLSVLAGS 98
Cdd:PRK11447   286 GKAIPELQQA-----VRANPK-DSEALGAlGQAYSQQGDRARAVAQFEKALALDPhsSNRDkweslLKVNRYWLLIQQGD 359
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892   99 --------PEAVELARREEQFAGKEILSSFVLGNHAALKGDWQAAARYYQQGSQ-DPMAHLVLPLLLA-WCDQAEHKAHA 168
Cdd:PRK11447   360 aalkannlAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRmDPGNTNAVRGLANlYRQQSPEKALA 439
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  169 ALDALSR--------IQGSVLSPFYTLHAALIAQlSGDSAEAGRLFAQAQHAMPGeDLLLARSYAAWCWQNGQRDKAREL 240
Cdd:PRK11447   440 FIASLSAsqrrsiddIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  241 LRRMI-----DADPVLA----LAG----KQFQAEVSKFPVDT---SLQGLA-----RAYVLTAFLFQQQLRNAEQEAMSP 299
Cdd:PRK11447   518 MRRLAqqkpnDPEQVYAyglyLSGsdrdRAALAHLNTLPRAQwnsNIQELAqrlqsDQVLETANRLRDSGKEAEAEALLR 597
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  300 QAARQARFRL-----------NEATRLMLSFALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGS 358
Cdd:PRK11447   598 QQPPSTRIDLtladwaqqrgdYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
443-552 3.79e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.08  E-value: 3.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 443 LFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEqHEDLAEAERLLRKAVELDPDDAAI----------- 511
Cdd:cd24142     3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLE-LGDVEEAREVLLRAIELDPDGGYEkylylgqlsgg 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1851076892 512 RDSLGWVMVergdlkeGTQLLERAVAQTPEDPEVNYHLGEV 552
Cdd:cd24142    82 EEALQYYEK-------GIEILEEELQALQAASAEAEEEAEE 115
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
451-546 4.12e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 451 YELGNWPKAKADLKEALALQPDNPLL---LNFLGYSMTEQHeDLAEAERLLRKAVELDPDDAAIRDSL---GWVMVERGD 524
Cdd:COG1729     4 LKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALG-DYDEAAEAFEKLLKRYPDSPKAPDALlklGLSYLELGD 82
                          90       100
                  ....*....|....*....|..
gi 1851076892 525 LKEGTQLLERAVAQTPEDPEVN 546
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAAK 104
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
322-572 8.60e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 45.36  E-value: 8.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 322 ELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLPVSE 401
Cdd:TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 402 LGNTEASRKNWQGAFAAYDKAVNLSragaplrgvKKEYWSLLFLrAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLG 481
Cdd:TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD---------PDFIFSHIQL-GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 482 YSMTEQHeDLAEAERLLRKAVEL----DPDDAAIRDSLG-------WVMvergDLKEGTQLLERAVAQTPEDPEVNYHLG 550
Cdd:TIGR00990 475 ELLLDQN-KFDEAIEKFDTAIELeketKPMYMNVLPLINkalalfqWKQ----DFIEAENLCEKALIIDPECDIAVATMA 549
                         250       260
                  ....*....|....*....|..
gi 1851076892 551 EVYWRMGRHREAVDHWNLALEL 572
Cdd:TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571
TPR_11 pfam13414
TPR repeat;
520-557 1.23e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 1.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1851076892 520 VERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMG 557
Cdd:pfam13414   5 YEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
459-575 1.34e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 459 AKADLKEALALQPDNPLLLNFLGYSMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQ 538
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1851076892 539 TPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
490-572 1.71e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 490 DLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQtpeDPEVNYhlgEVYWRMGR---HREAVDHW 566
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL---DPDGGY---EKYLYLGQlsgGEEALQYY 88

                  ....*.
gi 1851076892 567 NLALEL 572
Cdd:cd24142    89 EKGIEI 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
508-589 2.72e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 508 DAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELKPeprDEKLIRGALA 587
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP---DEPEARLNLG 79

                  ..
gi 1851076892 588 RA 589
Cdd:COG4783    80 LA 81
TPR_19 pfam14559
Tetratricopeptide repeat;
489-545 4.05e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.72  E-value: 4.05e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1851076892 489 EDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEV 545
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
445-606 4.37e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 4.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  445 LRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQhEDLAEAERLLRKAVELDPD-------DAAIRDSLGW 517
Cdd:PRK11447   274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHssnrdkwESLLKVNRYW 352
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  518 VMVERGD-------LKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLALELkpEPRDEKLIRG--ALAR 588
Cdd:PRK11447   353 LLIQQGDaalkannLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGlaNLYR 430
                          170
                   ....*....|....*...
gi 1851076892  589 AGNlPDKqASVSLSGLPA 606
Cdd:PRK11447   431 QQS-PEK-ALAFIASLSA 446
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
100-424 4.55e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 100 EAVELARREEQFAGKEILSSFVLGNHAALKGDWQAAARYYQQgsqdpmahlvlplLLAWCDQaEHKAHAALdalsriqgs 179
Cdd:COG2956    26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK-------------LLERDPD-RAEALLEL--------- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 180 vlspfytlhaALIAQLSGDSAEAGRLFAQAQHAMPGED---LLLARSYAawcwQNGQRDKARELLRRMIDADPVLALAgk 256
Cdd:COG2956    83 ----------AQDYLKAGLLDRAEELLEKLLELDPDDAealRLLAEIYE----QEGDWEKAIEVLERLLKLGPENAHA-- 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 257 qfqaevskfpvdtsLQGLARAYvltafLFQQQLRNAEQEamspqaarqarfrlneatrlmLSFALELDPHMSEALLMMAE 336
Cdd:COG2956   147 --------------YCELAELY-----LEQGDYDEAIEA---------------------LEKALKLDPDCARALLLLAE 186
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 337 VQQDEGHPQAARATLLRMPSGSPLMPVAAFKLALIDNESDHLDEARDKLLALVKDNPELVLpVSELGNTEASRKNWQGAF 416
Cdd:COG2956   187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAAL 265

                  ....*...
gi 1851076892 417 AAYDKAVN 424
Cdd:COG2956   266 ALLERQLR 273
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
543-575 6.27e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 6.27e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1851076892  543 PEVNYHLGEVYWRMGRHREAVDHWNLALELKPE 575
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_15 pfam13429
Tetratricopeptide repeat;
492-596 7.77e-04

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 41.57  E-value: 7.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 492 AEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDHWNLale 571
Cdd:pfam13429 162 DAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKALPYLRK--- 238
                          90       100
                  ....*....|....*....|....*
gi 1851076892 572 LKPEPRDEKLIRGALARAGNLPDKQ 596
Cdd:pfam13429 239 QAASNRNDPLWLLAYADALEQAGRA 263
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
486-567 1.36e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.99  E-value: 1.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  486 EQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVNYHLGEVYWRMGRHREAVDH 565
Cdd:PRK11447   472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551

                   ..
gi 1851076892  566 WN 567
Cdd:PRK11447   552 LN 553
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
300-397 1.37e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 41.33  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 300 QAARQ-ARFRLNEATRLmLSFALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSP-LMPVAAFKLALIDNESDH 377
Cdd:PRK11788  186 LAQQAlARGDLDAARAL-LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQALGD 264
                          90       100
                  ....*....|....*....|
gi 1851076892 378 LDEARDKLLALVKDNPELVL 397
Cdd:PRK11788  265 EAEGLEFLRRALEEYPGADL 284
HrpB1_HrpK pfam09613
Bacterial type III secretion protein (HrpB1_HrpK); This family of proteins is encoded by genes ...
488-590 2.89e-03

Bacterial type III secretion protein (HrpB1_HrpK); This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.


Pssm-ID: 312947 [Multi-domain]  Cd Length: 126  Bit Score: 38.08  E-value: 2.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 488 HEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVAQTPEDPEVN-------YHLGEVYWRMgrhr 560
Cdd:pfam09613  24 SEDTEDAELLLDALRVLRPNVPELDLLDGWLLIQRGDWDEALRLLRELEARAPGFPYAKallalclQALGDPEWRA---- 99
                          90       100       110
                  ....*....|....*....|....*....|
gi 1851076892 561 eavdHWNLALELKPEPRDEKLIRGALARAG 590
Cdd:pfam09613 100 ----YAQEVLEGDADPDALSLVRALLARAD 125
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
458-540 5.84e-03

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 39.45  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 458 KAKADLKEALALQPDNPLLLNFLGYsMTEQHEDLAEAERLLRKAVELDPDDAAIRDSLGWVMVERGDLKEGTQLLERAVA 537
Cdd:PRK12370  322 KAKEHAIKATELDHNNPQALGLLGL-INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400

                  ...
gi 1851076892 538 QTP 540
Cdd:PRK12370  401 LDP 403
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
51-141 6.06e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 6.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892  51 GAFLAGIAARSRGDDSEAARALRAASQADPANRD-MATQAFVLSVLAGSPEAVELARREEQFAGKEILSSFVLGNHAALK 129
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADaLLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98
                          90
                  ....*....|..
gi 1851076892 130 GDWQAAARYYQQ 141
Cdd:COG4235    99 GDYAEAIAAWQK 110
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
452-562 7.24e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 7.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 452 ELGNWPKAKADLKEALA-LQPDNPLLLNFLGYSMTEQHeDLAEAERLLRKAVELDPDDAAIRDSL--GWVMVERGDLKEG 528
Cdd:COG4700   101 ELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELG-RYAEALETLEKLIAKNPDFKSSDAHLlyARALEALGDLEAA 179
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1851076892 529 TQLLERAVAQTPeDPEVNYHLGEVYWRMGRHREA 562
Cdd:COG4700   180 EAELEALARRYS-GPEARYRYAKFLARQGRTAEA 212
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
290-426 7.75e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 7.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 290 RNAEQEAMSPQAARQARfRLNEATRLMLSfALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGSPLMPVAAFKLA 369
Cdd:COG4783     2 ACAEALYALAQALLLAG-DYDEAEALLEK-ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1851076892 370 LIDNESDHLDEARDKLLALVKDNPELVLPVSELGNTEASRKNWQGAFAAYDKAVNLS 426
Cdd:COG4783    80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
286-510 9.14e-03

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 38.81  E-value: 9.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 286 QQQLRNAEQEAMSPQAAR---QARFRLN----EATRLMLSFALELDPHMSEALLMMAEVQQDEGHPQAARATLLRMPSGS 358
Cdd:TIGR00540 119 DRYLAEAAELAPNSELAVlltRAELLLDqrdyEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAK 198
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 359 PLMPVAAFKL---ALIDNESDHLDEARDKLL-------ALVKDNPELVLPVSELGNteasrknwqgAFAAYDKAVNLsra 428
Cdd:TIGR00540 199 ALSPEEAARLeqqAYIGLLDEAREEDADALKtwwkqlpRAERQEPELAVAAAEALI----------QLGDHDEAEKL--- 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851076892 429 gapLRGVKKEYWSLLFLRAVTSYELGNWPKAKADLKEALALQPDNPLLLNFLGYSMTEQHEdLAEAERLLRKAVELDPDD 508
Cdd:TIGR00540 266 ---IEEALKKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQL-WGKAQSYLEASLSLAPTE 341

                  ..
gi 1851076892 509 AA 510
Cdd:TIGR00540 342 EA 343
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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