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Conserved domains on  [gi|1820340631|ref|WP_165453601|]
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MULTISPECIES: Rpn family recombination-promoting nuclease/putative transposase [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09956 super family cl32439
ISNCY family transposase;
3-315 1.57e-122

ISNCY family transposase;


The actual alignment was detected with superfamily member PRK09956:

Pssm-ID: 182167 [Multi-domain]  Cd Length: 308  Bit Score: 353.65  E-value: 1.57e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   3 MKKRMTSTPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVV 82
Cdd:PRK09956    1 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  83 IEHQSSPDNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGCSFPLIDVT 162
Cdd:PRK09956   81 IEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 163 VMPDDEIVQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYE 242
Cdd:PRK09956  161 IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQK 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1820340631 243 ETLMSIAQKLKQEGRQEGRQEGRLegreeghqEGLQEGSRREALRIAGSMLQNGLDKEMVQKITGLSADELQP 315
Cdd:PRK09956  241 ERLMTIAERLRQEGHQIGWQEGKL--------EGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAA 305
 
Name Accession Description Interval E-value
PRK09956 PRK09956
ISNCY family transposase;
3-315 1.57e-122

ISNCY family transposase;


Pssm-ID: 182167 [Multi-domain]  Cd Length: 308  Bit Score: 353.65  E-value: 1.57e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   3 MKKRMTSTPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVV 82
Cdd:PRK09956    1 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  83 IEHQSSPDNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGCSFPLIDVT 162
Cdd:PRK09956   81 IEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 163 VMPDDEIVQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYE 242
Cdd:PRK09956  161 IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQK 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1820340631 243 ETLMSIAQKLKQEGRQEGRQEGRLegreeghqEGLQEGSRREALRIAGSMLQNGLDKEMVQKITGLSADELQP 315
Cdd:PRK09956  241 ERLMTIAERLRQEGHQIGWQEGKL--------EGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAA 305
Transposase_31 pfam04754
Putative transposase, YhgA-like; This family of putative transposases includes the YhgA ...
 10-212 2.66e-117

Putative transposase, YhgA-like; This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.


Pssm-ID: 428107  Cd Length: 202  Bit Score: 336.11  E-value: 2.66e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  10 TPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVVIEHQSSP 89
Cdd:pfam04754   1 TPHDAVFKQFLSDPETARDFLDIHLPAELLALCDLETLKLESGSFIEDNLRESYSDLLFSVKTKGGEGYIYVLIEHQSYP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  90 DNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSpYPFSLNWLDEFADPQMAKTLYGCSFPLIDVTVMPDDEI 169
Cdd:pfam04754  81 DKLMAFRLLRYAIAIMQRHLDAGHKELPLVIPIVFYHGERS-WPYSLSWLDLFDDPELAKYLYSFEFPLVDLTVIPDDEI 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1820340631 170 VQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLR 212
Cdd:pfam04754 160 MQHRRLALLELLQKHIRQRDLAELLDQLVELLQLGYTTEDQLE 202
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
8-316 1.74e-102

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 302.27  E-value: 1.74e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   8 TSTPHDAVFKRFLRHpeTANDFLALYLPEAIrQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVVIEHQS 87
Cdd:COG5464     1 MKTPHDALFKQLFSN--FPRDFFELLLPEEL-ELIDLSTLELLSTEFVDDKLRAFRSDGLFSPKTKDGPGYIYLLIEHQS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  88 SPDNHMAFRLMRYAIAAMQRHLDAGhktlpLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGcSFPLIDVTVMPDD 167
Cdd:COG5464    78 QPDKLMPFRLLRYIVLYLRQYLKKG-----PVIPVVIYHGRSSPWPVPTRYLDLFADPELAEELLF-SYRLIDLYLIEDE 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 168 EIVQHRRVALLELMQKHIRQRDLSGITESLAAVV--MLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYEETL 245
Cdd:COG5464   152 EILQHPLGALLPLVKILDRTDALEELLRLLARLLqeIEDEAQREQLEALIEYIAVKFQPDLEREEIEAMLRLIDELKETI 231

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1820340631 246 MSIAQKLKQEGRQEGRQEGRlegreeghqEGLQEGSRREALRIAGSMLQN--GLDKEMVQKITGLSADELQPL 316
Cdd:COG5464   232 MTIYQELLQEGREEGRQEGR---------EGRQEGRQEGKLELALRLLKRrfGLPLELIARITGLSLEQLEAL 295
T_den_put_tspse TIGR01784
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ...
 11-314 5.01e-45

conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.


Pssm-ID: 273806 [Multi-domain]  Cd Length: 270  Bit Score: 154.09  E-value: 5.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  11 PHDAVFKRFLRHPEtaNDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTcgaGYVYVVIEHQSSPD 90
Cdd:TIGR01784   1 PHDFLFKQLFGDEN--EDFLIIFLNAVLGELLDIKTLELSSQSFVEENLEDKFSDLDILATDS---EGLHYNIEHQVAPD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  91 NHMAFRLMRYaIAAMQRHLDAGHKTLPLVVPMLFYHgvtspypfsLNWLDEFADPQMAKTLYGCSFPLiDVTVMPDDeiv 170
Cdd:TIGR01784  76 KDMAKRMLYY-WSAMYQSQLKQGDKYVVLAPTVFIN---------ILPFDLFGDEERVHNIYLSEEED-SIFELTDL--- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 171 QHRRVALLELMQKHIRQRDLSgiteSLAAVVML---GYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYEETLMS 247
Cdd:TIGR01784 142 QELHLLELPKLKAIIDERLLD----VLDRWLLLlkgKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMT 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1820340631 248 IAQklkqegrqegrqegrlEGREEGHQEGLQEGSRREALRIAGSMLQNGLDKEMVQKITGLSADELQ 314
Cdd:TIGR01784 218 DAI----------------SAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQVAEATGLSVEELE 268
 
Name Accession Description Interval E-value
PRK09956 PRK09956
ISNCY family transposase;
3-315 1.57e-122

ISNCY family transposase;


Pssm-ID: 182167 [Multi-domain]  Cd Length: 308  Bit Score: 353.65  E-value: 1.57e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   3 MKKRMTSTPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVV 82
Cdd:PRK09956    1 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  83 IEHQSSPDNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGCSFPLIDVT 162
Cdd:PRK09956   81 IEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 163 VMPDDEIVQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYE 242
Cdd:PRK09956  161 IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQK 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1820340631 243 ETLMSIAQKLKQEGRQEGRQEGRLegreeghqEGLQEGSRREALRIAGSMLQNGLDKEMVQKITGLSADELQP 315
Cdd:PRK09956  241 ERLMTIAERLRQEGHQIGWQEGKL--------EGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAA 305
PRK09857 PRK09857
recombination-promoting nuclease RpnA;
3-313 1.83e-117

recombination-promoting nuclease RpnA;


Pssm-ID: 182117 [Multi-domain]  Cd Length: 292  Bit Score: 340.10  E-value: 1.83e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   3 MKKRMTSTPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVV 82
Cdd:PRK09857    1 MSKKQSSTPHDALFKLFLRQPETARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  83 IEHQSSPDNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGCSFPLIDVT 162
Cdd:PRK09857   81 IEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 163 VMPDDEIVQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYE 242
Cdd:PRK09857  161 VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHK 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1820340631 243 ETLMSIAQKLKQEGRQEgrqegrlegreeghqeglqegsrrEALRIAGSMLQNGLDKEMVQKITGLSADEL 313
Cdd:PRK09857  241 ESLMTIAERLRQEGEQS------------------------KALHIAKIMLESGVPLADIMRFTGLSEEEL 287
Transposase_31 pfam04754
Putative transposase, YhgA-like; This family of putative transposases includes the YhgA ...
 10-212 2.66e-117

Putative transposase, YhgA-like; This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.


Pssm-ID: 428107  Cd Length: 202  Bit Score: 336.11  E-value: 2.66e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  10 TPHDAVFKRFLRHPETANDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVVIEHQSSP 89
Cdd:pfam04754   1 TPHDAVFKQFLSDPETARDFLDIHLPAELLALCDLETLKLESGSFIEDNLRESYSDLLFSVKTKGGEGYIYVLIEHQSYP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  90 DNHMAFRLMRYAIAAMQRHLDAGHKTLPLVVPMLFYHGVTSpYPFSLNWLDEFADPQMAKTLYGCSFPLIDVTVMPDDEI 169
Cdd:pfam04754  81 DKLMAFRLLRYAIAIMQRHLDAGHKELPLVIPIVFYHGERS-WPYSLSWLDLFDDPELAKYLYSFEFPLVDLTVIPDDEI 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1820340631 170 VQHRRVALLELMQKHIRQRDLSGITESLAAVVMLGYTNRRQLR 212
Cdd:pfam04754 160 MQHRRLALLELLQKHIRQRDLAELLDQLVELLQLGYTTEDQLE 202
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
8-316 1.74e-102

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 302.27  E-value: 1.74e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631   8 TSTPHDAVFKRFLRHpeTANDFLALYLPEAIrQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTCGAGYVYVVIEHQS 87
Cdd:COG5464     1 MKTPHDALFKQLFSN--FPRDFFELLLPEEL-ELIDLSTLELLSTEFVDDKLRAFRSDGLFSPKTKDGPGYIYLLIEHQS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  88 SPDNHMAFRLMRYAIAAMQRHLDAGhktlpLVVPMLFYHGVTSPYPFSLNWLDEFADPQMAKTLYGcSFPLIDVTVMPDD 167
Cdd:COG5464    78 QPDKLMPFRLLRYIVLYLRQYLKKG-----PVIPVVIYHGRSSPWPVPTRYLDLFADPELAEELLF-SYRLIDLYLIEDE 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 168 EIVQHRRVALLELMQKHIRQRDLSGITESLAAVV--MLGYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYEETL 245
Cdd:COG5464   152 EILQHPLGALLPLVKILDRTDALEELLRLLARLLqeIEDEAQREQLEALIEYIAVKFQPDLEREEIEAMLRLIDELKETI 231

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1820340631 246 MSIAQKLKQEGRQEGRQEGRlegreeghqEGLQEGSRREALRIAGSMLQN--GLDKEMVQKITGLSADELQPL 316
Cdd:COG5464   232 MTIYQELLQEGREEGRQEGR---------EGRQEGRQEGKLELALRLLKRrfGLPLELIARITGLSLEQLEAL 295
T_den_put_tspse TIGR01784
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ...
 11-314 5.01e-45

conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.


Pssm-ID: 273806 [Multi-domain]  Cd Length: 270  Bit Score: 154.09  E-value: 5.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  11 PHDAVFKRFLRHPEtaNDFLALYLPEAIRQQCDFATLRLQSASFIDEDLRAWYSDVLWSVQTTcgaGYVYVVIEHQSSPD 90
Cdd:TIGR01784   1 PHDFLFKQLFGDEN--EDFLIIFLNAVLGELLDIKTLELSSQSFVEENLEDKFSDLDILATDS---EGLHYNIEHQVAPD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631  91 NHMAFRLMRYaIAAMQRHLDAGHKTLPLVVPMLFYHgvtspypfsLNWLDEFADPQMAKTLYGCSFPLiDVTVMPDDeiv 170
Cdd:TIGR01784  76 KDMAKRMLYY-WSAMYQSQLKQGDKYVVLAPTVFIN---------ILPFDLFGDEERVHNIYLSEEED-SIFELTDL--- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 171 QHRRVALLELMQKHIRQRDLSgiteSLAAVVML---GYTNRRQLRMLFHYMLQYGNTAEPGVFLRRLARRLPQYEETLMS 247
Cdd:TIGR01784 142 QELHLLELPKLKAIIDERLLD----VLDRWLLLlkgKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMT 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1820340631 248 IAQklkqegrqegrqegrlEGREEGHQEGLQEGSRREALRIAGSMLQNGLDKEMVQKITGLSADELQ 314
Cdd:TIGR01784 218 DAI----------------SAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQVAEATGLSVEELE 268
fliH PRK05687
flagellar assembly protein FliH;
238-316 2.50e-07

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 50.70  E-value: 2.50e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1820340631 238 LPQYEETLMSIAQKLKQEGRQEGRQEGRLEGREEGHQEGLQEGsrREALRIAGSMLQngldKEMVQKITGLSADELQPL 316
Cdd:PRK05687   54 APLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQG--LEQGLAEGQAQA----APQAAQLQALAAQFQEPL 126
FliH COG1317
Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular ...
 246-311 6.39e-06

Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440928 [Multi-domain]  Cd Length: 172  Bit Score: 45.68  E-value: 6.39e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1820340631 246 MSIAQKLKQEGRQEGRQEGRLEGREEGHQEGLQEGsrREALRIAGSMLQNgLDKEMVQKITGLSAD 311
Cdd:COG1317     1 MEELEALREEAREEGYAEGYEEGLEEGRAEAEAEI--AEALEQLQALLEQ-LQAPLEELDEELEEE 63
fliH PRK13386
flagellar assembly protein H; Provisional
 254-287 2.00e-04

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 41.93  E-value: 2.00e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1820340631 254 QEGRQEGRQEGRLEGREEGHQEGLQEGsrREALR 287
Cdd:PRK13386   61 EEGEEEGRQEGHAAGFAQGRQKGRIEG--RQSIR 92
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 256-283 3.37e-04

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 37.40  E-value: 3.37e-04
                          10        20
                  ....*....|....*....|....*...
gi 1820340631 256 GRQEGRQEGRLEGREEGHQEGLQEGSRR 283
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQL 28
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 254-282 1.73e-03

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 35.47  E-value: 1.73e-03
                          10        20
                  ....*....|....*....|....*....
gi 1820340631 254 QEGRQEGRQEGRLEGREEGHQEGLQEGSR 282
Cdd:pfam09811   3 REGISEGKEEGLQEGFDEGFQEGAQLGLE 31
fliH PRK06669
flagellar assembly protein H; Validated
 250-295 2.47e-03

flagellar assembly protein H; Validated


Pssm-ID: 235850 [Multi-domain]  Cd Length: 281  Bit Score: 38.84  E-value: 2.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1820340631 250 QKLKQEGRQEGRQEGRLEGREEGhQEGLQEgSRREALRIAGSMLQN 295
Cdd:PRK06669  113 ERLIEEAKAEGYEEGYEKGREEG-LEEVRE-LIEQLNKIIEKLIKK 156
fliH PRK13386
flagellar assembly protein H; Provisional
 254-280 2.53e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 38.85  E-value: 2.53e-03
                          10        20
                  ....*....|....*....|....*..
gi 1820340631 254 QEGRQEGRQEGRLEGREEGHQEGLQEG 280
Cdd:PRK13386   49 QEGIQQGFDQGLEEGEEEGRQEGHAAG 75
fliH PRK13386
flagellar assembly protein H; Provisional
 253-306 3.68e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 38.08  E-value: 3.68e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820340631 253 KQEGRQEGRQEGRLEGREEGHQEGLQEGsRREALRIAG------SMLQNGLDK----------EMVQKIT 306
Cdd:PRK13386   64 EEEGRQEGHAAGFAQGRQKGRIEGRQSI-RQQFNDAAKplgalrQQLERYLAEyeqqqrdellDLVEKVT 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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