NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1767158919|ref|WP_151940040|]
View 

MULTISPECIES: WG repeat-containing protein [Bacteroidales]

Protein Classification

WG repeat-containing protein( domain architecture ID 10632905)

WG repeat-containing protein may form a beta solenoid structure

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WG_beta_rep pfam14903
WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the ...
 243-278 3.03e-09

WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).


:

Pssm-ID: 464361 [Multi-domain]  Cd Length: 35  Bit Score: 52.45  E-value: 3.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1767158919 243 GYIDPQGNVVIEPIYDNAFPFHEGKAIVynKEADKW 278
Cdd:pfam14903   2 GYIDKKGKIVIPPKYDEAGPFSEGLAAV--KKNGKW 35
 
Name Accession Description Interval E-value
WG_beta_rep pfam14903
WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the ...
 243-278 3.03e-09

WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).


Pssm-ID: 464361 [Multi-domain]  Cd Length: 35  Bit Score: 52.45  E-value: 3.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1767158919 243 GYIDPQGNVVIEPIYDNAFPFHEGKAIVynKEADKW 278
Cdd:pfam14903   2 GYIDKKGKIVIPPKYDEAGPFSEGLAAV--KKNGKW 35
 
Name Accession Description Interval E-value
WG_beta_rep pfam14903
WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the ...
 243-278 3.03e-09

WG containing repeat; This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).


Pssm-ID: 464361 [Multi-domain]  Cd Length: 35  Bit Score: 52.45  E-value: 3.03e-09
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1767158919 243 GYIDPQGNVVIEPIYDNAFPFHEGKAIVynKEADKW 278
Cdd:pfam14903   2 GYIDKKGKIVIPPKYDEAGPFSEGLAAV--KKNGKW 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH