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Conserved domains on  [gi|1701972769|ref|WP_142286119|]
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MULTISPECIES: integrase core domain-containing protein, partial [Klebsiella]

Protein Classification

transposase( domain architecture ID 10616106)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-56 6.03e-29

Integrase core domain;


:

Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 97.29  E-value: 6.03e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1701972769  1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTP 56
Cdd:pfam13683 12 KPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
 
Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-56 6.03e-29

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 97.29  E-value: 6.03e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1701972769  1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTP 56
Cdd:pfam13683 12 KPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
1-59 8.67e-27

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 99.18  E-value: 8.67e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1701972769   1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEF 59
Cdd:NF033516  310 NCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-65 1.46e-25

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 95.22  E-value: 1.46e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1701972769   1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRK 65
Cdd:COG2801   243 NPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS481 NF033577
IS481 family transposase; null
 2-60 5.63e-17

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 71.85  E-value: 5.63e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1701972769   2 PTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFI 60
Cdd:NF033577  225 PQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 2-58 5.08e-08

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 47.17  E-value: 5.08e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1701972769   2 PTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAE 58
Cdd:PHA02517  205 SYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
 
Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-56 6.03e-29

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 97.29  E-value: 6.03e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1701972769  1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTP 56
Cdd:pfam13683 12 KPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
1-59 8.67e-27

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 99.18  E-value: 8.67e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1701972769   1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEF 59
Cdd:NF033516  310 NCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-65 1.46e-25

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 95.22  E-value: 1.46e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1701972769   1 KPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRK 65
Cdd:COG2801   243 NPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS481 NF033577
IS481 family transposase; null
 2-60 5.63e-17

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 71.85  E-value: 5.63e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1701972769   2 PTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFI 60
Cdd:NF033577  225 PQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 2-58 5.08e-08

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 47.17  E-value: 5.08e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1701972769   2 PTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAE 58
Cdd:PHA02517  205 SYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
rve_2 pfam13333
Integrase core domain;
9-59 2.50e-05

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 37.24  E-value: 2.50e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1701972769  9 ESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSslndMTPAEF 59
Cdd:pfam13333  1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKRLKG----LSPVQY 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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