Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
1-197
1.48e-129
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
The actual alignment was detected with superfamily member COG3517:
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 372.20 E-value: 1.48e-129
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
1-197
1.48e-129
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 372.20 E-value: 1.48e-129
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
1-197
3.09e-123
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 356.21 E-value: 3.09e-123
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
1-129
7.15e-73
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 222.00 E-value: 7.15e-73
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
1-197
1.48e-129
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 372.20 E-value: 1.48e-129
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
1-197
3.09e-123
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 356.21 E-value: 3.09e-123
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
1-129
7.15e-73
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 222.00 E-value: 7.15e-73
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable ...
139-197
1.35e-28
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. This entry represents the gpW/gp25-like domain.
Pssm-ID: 436852 [Multi-domain] Cd Length: 111 Bit Score: 102.95 E-value: 1.35e-28
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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of your query sequence and the protein sequences used to curate the domain model,
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The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits
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Domains are color coded according to superfamilies
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
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specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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